View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2785_low_17 (Length: 235)
Name: NF2785_low_17
Description: NF2785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2785_low_17 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 39521364 - 39521130
Alignment:
| Q |
1 |
tcgagagaatggttaccagatgacagttatgtaactaatctacaaaactctaagaatcacttctttgacggtggtattccacgcactgcaaatgatacat |
100 |
Q |
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| T |
39521364 |
tcgagagaatggttagcagatgacagttatgtaactaatccacaaaacgctaagaatcgctcctttgacgttcatattccacgcactgcaaatgatacat |
39521265 |
T |
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| Q |
101 |
ctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttctagcagcataagttggagggttcc |
200 |
Q |
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| T |
39521264 |
ctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttctagcaacataagttggagtgttcc |
39521165 |
T |
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| Q |
201 |
tgtagagaagaacgtagatcatttacttaggtttc |
235 |
Q |
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| T |
39521164 |
tgtagagaagaacgtagatcatttacttaggtttc |
39521130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 39576006 - 39575772
Alignment:
| Q |
1 |
tcgagagaatggttaccagatgacagttatgtaactaatctacaaaactctaagaatcacttctttgacggtggtattccacgcactgcaaatgatacat |
100 |
Q |
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| T |
39576006 |
tcgagagaatggttaccagatgacagatatgtaactaatctacaaaacgctaagaattgctcctttgacggtgatattccacgcactgcaaatgatacgt |
39575907 |
T |
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| Q |
101 |
ctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttctagcagcataagttggagggttcc |
200 |
Q |
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| T |
39575906 |
ctgatggtccaaattcaaatcaatatattgctccagatattgtttataaaactggcaaagagagtattaacggttctagcagcataagttggagtgttcc |
39575807 |
T |
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| Q |
201 |
tgtagagaagaacgtagatcatttacttaggtttc |
235 |
Q |
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| T |
39575806 |
tgtagagaagaacgtagatcattttcttaggtttc |
39575772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 39544160 - 39543997
Alignment:
| Q |
1 |
tcgagagaatggttaccagatgacagttatgtaactaatctacaaaactctaagaatcacttctttgacggtggtattccacgcactgcaaatgatacat |
100 |
Q |
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| T |
39544160 |
tcgagagaatggttaccagatgacagttatataactaatccacaaaacgctaagaatggttcctttgcagatgaaattaaacgcactgcaaataatacat |
39544061 |
T |
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| Q |
101 |
ctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagag |
164 |
Q |
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| T |
39544060 |
atgaaggtccaaattcaaatatatatattgctccggacgctgtttatgaaactgccaaagagag |
39543997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 229
Target Start/End: Complemental strand, 39524861 - 39524630
Alignment:
| Q |
4 |
agagaatggttaccagatgacagttatgtaactaatctacaaaactctaagaatcacttctttgacggtggtattccacgcactgcaaatgatacatctg |
103 |
Q |
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| T |
39524861 |
agagaatggttaccagatgacagatatataactgatccccaaaacgctaagaatggttcctttgaaggtgatattaaacgcactgcaaatgatgaatctg |
39524762 |
T |
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| Q |
104 |
atggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttctagc------agcataagttggagggt |
197 |
Q |
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| T |
39524761 |
ttgattcaaattcaaataaatacataggtccagatattgtttataaaactgccaaagtgagtgttaatggttcaatcggtttaaacataagttggagtgt |
39524662 |
T |
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| Q |
198 |
tcctgtagagaagaacgtagatcatttactta |
229 |
Q |
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| T |
39524661 |
tcctgtggagaagaatatagatcatttcctta |
39524630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 39580543 - 39580415
Alignment:
| Q |
10 |
tggttaccagatgacagttatgtaactaatctacaaaactctaagaatcacttctttgacggtggtattccacgcactgcaaatgatacatctgatggtc |
109 |
Q |
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| T |
39580543 |
tggttaccagatgacagttacatcactaatccacataacgctaagaatggtttctttggaggtgatattaaacgcactgcaggtgatgaatctgatggtc |
39580444 |
T |
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| Q |
110 |
caaattcaaatcaatatattgctccagac |
138 |
Q |
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| T |
39580443 |
caaattcaaatatacatattggtccagac |
39580415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 165
Target Start/End: Complemental strand, 39511036 - 39510957
Alignment:
| Q |
86 |
ctgcaaatgatacatctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagt |
165 |
Q |
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| T |
39511036 |
ctgcaaatgatgaatctgatggtccaaattcaagtatatatattggtccagatattgtttataaaactggccaagagagt |
39510957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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