View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2785_low_18 (Length: 211)
Name: NF2785_low_18
Description: NF2785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2785_low_18 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 39521571 - 39521361
Alignment:
| Q |
1 |
tcatcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctaatggtc |
100 |
Q |
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| T |
39521571 |
tcatcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctactggtc |
39521472 |
T |
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| Q |
101 |
ggggcttaactacttatagtggcggttttcactcacaacgatcgttgggaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagaggaaccgc |
200 |
Q |
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| T |
39521471 |
ggggcttaactacttatagtggcggtttacactcacaacgatcgttggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagaggaaccga |
39521372 |
T |
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| Q |
201 |
tacattatcga |
211 |
Q |
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||||||||||| |
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| T |
39521371 |
tacattatcga |
39521361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 39544361 - 39544279
Alignment:
| Q |
4 |
tcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacat |
86 |
Q |
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| T |
39544361 |
tcatttgcgttttttaatgcatttgaactctttattctccctcttcatttaatacccaattcaatagctcgtttcaattacat |
39544279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 39576216 - 39576039
Alignment:
| Q |
1 |
tcatcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctaatggtc |
100 |
Q |
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| T |
39576216 |
tcatcatttgcgtttgttaatgcaatagaactctttatgcttccggttcatttaatccctgattcaatgccacatttctcttacaaagaatctggtgttc |
39576117 |
T |
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| Q |
101 |
---ggggcttaactacttatagtggcggttttcactcacaacgatcgttgggaaccaaactccgtcttaacgtcggtg |
175 |
Q |
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| T |
39576116 |
gaggaggcttatctacttatattggcggtttacactcacaacgagccttggaaacaaaacatcgttttaacgtcggtg |
39576039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 39580756 - 39580629
Alignment:
| Q |
1 |
tcatcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctaatggtc |
100 |
Q |
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| T |
39580756 |
tcatcatttgcgtttgttaatgcaatggaactctttatactccccactcatttcatccccgaatcagtcacacatttcaattacattaattctactggtc |
39580657 |
T |
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| Q |
101 |
ggggcttaactacttatagtggcggttt |
128 |
Q |
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| T |
39580656 |
aaggcttatcttcttacactggcggttt |
39580629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 39525067 - 39525007
Alignment:
| Q |
2 |
catcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccga |
62 |
Q |
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|||||||||| |||| ||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
39525067 |
catcatttgcctttgctaatgcaatagaactctttatgctccctgttcatttaatccccga |
39525007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 39511313 - 39511156
Alignment:
| Q |
13 |
tttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctaatggtcggggcttaacta |
112 |
Q |
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|||||||| ||||| ||||||||| ||||||| ||||||||||||| |||||||| ||||| | ||||| | |||| | || |||||| ||| |
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| T |
39511313 |
tttgttaacgcaatagaactctttgtgctccccgttcatttaatccctgattcagtgttgcgttttacttacaaagaatctagttctccaggcttatcta |
39511214 |
T |
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| Q |
113 |
cttatagtggcggttttcactcacaacgatcgttgggaaccaaactccgtcttaacgt |
170 |
Q |
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| T |
39511213 |
attatagtggcggtttaaactcacaacgagctttggaaacgaaacatcgtcttaacgt |
39511156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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