View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2785_low_4 (Length: 512)
Name: NF2785_low_4
Description: NF2785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2785_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 6 - 490
Target Start/End: Complemental strand, 48593738 - 48593258
Alignment:
| Q |
6 |
gagatgaagtaaagagaaataggagagcaagggcttaagattgtgaatagagaaagacataaacaacaattgcactacttaatttatcacaaattccctt |
105 |
Q |
| |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
48593738 |
gagaagaagtaaagagaaatagaagagcaagggcttaagattgtgaatagagaaagacataaacaacaattgcactactt----tatcacaaattccctt |
48593643 |
T |
|
| Q |
106 |
ttattaaagttgaagaaatgtaagggggttcaatcttgcaactggaatacaaataagatcattggccctaggagcagtcaatccaggccgttcatccata |
205 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48593642 |
ttactaaagttgaagaaatgtaagggggttcaatcttgcaactggaatacaaataagatcattggccctaggagcagtcaatccaggccgttcatccata |
48593543 |
T |
|
| Q |
206 |
tcaannnnnnngccttgatctaaaatcttacattccgaatcaagcatcttccactcaaagcattgtaccaaagcaccaattacagtgggtaattgacgta |
305 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48593542 |
tcaatttttttgccttgatctaagatcttacattccgaatcaagcatcttccactcaaagcattgtaccaaagcaccaattacagtgggtaattgacgta |
48593443 |
T |
|
| Q |
306 |
gggccaaaggcataccaggacaacctctccttccagaaccaaatggcaacaactcaaactggtgccctttcatgtcaatatctttgttttctaaaaacct |
405 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48593442 |
gggccaaaggcataccaggacaacctctccttccagaaccaaatggcaacaactcaaactggtgccctttcatgtcaatatctttgttttctaaaaacct |
48593343 |
T |
|
| Q |
406 |
ttctggtctaaactctaatgggttttcccatatctttgggtcccttgccatagcccaaatgtttacacaaaccattgagcctttc |
490 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48593342 |
ttctggcctaaactctaatgggttttcccatatctttgggtcccttgccatagcccaaatgtttacacaaaccattgagcctttc |
48593258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 6 - 490
Target Start/End: Complemental strand, 48598349 - 48597869
Alignment:
| Q |
6 |
gagatgaagtaaagagaaataggagagcaagggcttaagattgtgaatagagaaagacataaacaacaattgcactacttaatttatcacaaattccctt |
105 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
48598349 |
gagaagaagtaaagagaaatagaagagcaagggcttaagattgtgaatagagaaagacataaacaacaattgcactactt----tatcacaaattccctt |
48598254 |
T |
|
| Q |
106 |
ttattaaagttgaagaaatgtaagggggttcaatcttgcaactggaatacaaataagatcattggccctaggagcagtcaatccaggccgttcatccata |
205 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48598253 |
ttactaaagttgaagaaatgtaagggggttcaatcttgcaactggaatacaaataagatcattggccctaggagcagtcaatccaggccgttcatccata |
48598154 |
T |
|
| Q |
206 |
tcaannnnnnngccttgatctaaaatcttacattccgaatcaagcatcttccactcaaagcattgtaccaaagcaccaattacagtgggtaattgacgta |
305 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48598153 |
tcaatttttttgccttgatctaagatcttacattccgaatcaagcatcttccactcaaagcattgtaccaaagcaccaattacagtgggtaattgacgta |
48598054 |
T |
|
| Q |
306 |
gggccaaaggcataccaggacaacctctccttccagaaccaaatggcaacaactcaaactggtgccctttcatgtcaatatctttgttttctaaaaacct |
405 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48598053 |
gggccaaaggcataccaggacaacctctccttccagaaccaaatggcaacaactcaaactggtgccctttcatgtcaatatctttgttttctaaaaacct |
48597954 |
T |
|
| Q |
406 |
ttctggtctaaactctaatgggttttcccatatctttgggtcccttgccatagcccaaatgtttacacaaaccattgagcctttc |
490 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48597953 |
ttctggcctaaactctaatgggttttcccatatctttgggtcccttgccatagcccaaatgtttacacaaaccattgagcctttc |
48597869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 92 - 489
Target Start/End: Original strand, 23230593 - 23230999
Alignment:
| Q |
92 |
tcacaaattcccttttattaaagttgaagaaatgtaagggggttcaatcttgcaactggaatacaaataagatcattggccctaggagcagtcaatccag |
191 |
Q |
| |
|
||||||||||||||||| |||| |||||||| ||| ||||||| ||||| || ||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
23230593 |
tcacaaattcccttttacaaaagctgaagaaaagtatttgggttcattcttgaaatcggaatacaaataagatcattggctctaggagcggtcaatccag |
23230692 |
T |
|
| Q |
192 |
gccgttcatccatatcaannnnnnngccttgatctaaaatcttacattccgaatcaagcatcttccactcaaagcattgtaccaaagcaccaattacagt |
291 |
Q |
| |
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| | |||||||||||| | |||| ||||||| || |||| ||| || |||||||| ||||||||||||||||| |||||||| || | ||| || |
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| T |
23230693 |
gtctttcatccatatcgattgttttgcctcgatctaatattttaccttcggagtcaagcattttccactcaaagcattgcaccaaagccccgactacggt |
23230792 |
T |
|
| Q |
292 |
gggtaattgacgtagggccaaaggcataccaggacaacctctccttccagaaccaaatggcaacaactcaaactggtgccctttcatgtcaata------ |
385 |
Q |
| |
|
||| ||||| || | |||||| ||||||||||| || ||||||||||||||||||||||| | ||||||| | || ||||||||||| || ||| |
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|
| T |
23230793 |
gggcaattggcgcatggccaacggcataccagggcagcctctccttccagaaccaaatggtagcaactcatagtgatgccctttcatatctatattgttt |
23230892 |
T |
|
| Q |
386 |
---tctttgttttctaaaaacctttctggtctaaactctaatgggttttcccatatctttgggtcccttgccatagcccaaatgtttacacaaaccattg |
482 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||| ||||||||||||||| |||| ||| |||||||||||||||| ||||||||||||| |
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| T |
23230893 |
ccttctttgttttctaaaaacctttctggcttaaaatctaatgcattttcccatatcttttggtctcttcccatagcccaaatgttcacacaaaccattg |
23230992 |
T |
|
| Q |
483 |
agccttt |
489 |
Q |
| |
|
| ||||| |
|
|
| T |
23230993 |
atccttt |
23230999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 134 - 489
Target Start/End: Original strand, 23222890 - 23223254
Alignment:
| Q |
134 |
ttcaatcttgcaactggaatacaaataagatcattggccctaggagcagtcaatccaggccgttcatccatatcaannnnnnngccttgatctaaaatct |
233 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| | | |
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| T |
23222890 |
ttcaatcttgcaactggaatgcaaaaaagatcattggctctaggagcagtcaatccaggccgttcatccatatcgattgttttgccttgatctaataatt |
23222989 |
T |
|
| Q |
234 |
tacattccgaatcaagcatcttccactcaaagcattgtaccaaagcaccaattacagtgggtaattgacgtagggccaaaggcataccaggacaacctct |
333 |
Q |
| |
|
||| ||| || ||||||||||||||||||||||||||||| ||||| ||||| ||||| || |||| || | |||||||||||| || || |||||||| |
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|
| T |
23222990 |
taccttcagagtcaagcatcttccactcaaagcattgtactaaagctccaatcacagtcggcaattcgcgcatggccaaaggcatccccgggcaacctct |
23223089 |
T |
|
| Q |
334 |
ccttccagaaccaaatggcaacaactcaaactggtgccctttcatgtcaatat--ctttgtt-------ttctaaaaacctttctggtctaaactctaat |
424 |
Q |
| |
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|||||||||||||||||||||||||||||| | |||||||| || || || | || | || ||||||||||||||| || |||||||||| | |
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| T |
23223090 |
ccttccagaaccaaatggcaacaactcaaagtcatgccctttgatatctatctcactctcttttccagattctaaaaacctttcaggcctaaactctagt |
23223189 |
T |
|
| Q |
425 |
gggttttcccatatctttgggtcccttgccatagcccaaatgtttacacaaaccattgagccttt |
489 |
Q |
| |
|
||||||| ||| |||||| ||||||| | |||||||||||||| |||||||| ||||||||||| |
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|
| T |
23223190 |
gggtttttccaagtctttgagtcccttccaatagcccaaatgttcacacaaactattgagccttt |
23223254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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