View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2785_low_6 (Length: 435)
Name: NF2785_low_6
Description: NF2785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2785_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 44386149 - 44385754
Alignment:
| Q |
1 |
tcaattgccatttatatgtgttttatttcactcgcgtcaagagtacatgctcgtttttctaagcttaacttcatgtttattttattatatttgatcataa |
100 |
Q |
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| T |
44386149 |
tcaattgccatttatatgt--tttatttcactcgcgtcaagagtacatgctcgtttttctaagcttaacttcatgtttattttattatatttgatcataa |
44386052 |
T |
|
| Q |
101 |
tatatgtatcaaaagtcctaaataataatgattttaatgtttcgnnnnnnnnnngtcctaaataatatatttaaacatctggattatacaatctaaatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44386051 |
tatatgtatcaaaagtcctaaataataatgattttaatgtttcgaaaaaaagaagtcctaaataatatatttaaacatctggattatacaatctaaatgt |
44385952 |
T |
|
| Q |
201 |
gtataaagtattgaaaagtgtattttatagactctgatattgtacaatattgacatgtaaaatatcctgannnnnnnnnnaaagtcttgtatacaatgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44385951 |
gtataaagtattgaaaagtgtattttatagactctgatattgtacaatattgacatgtaaaatatcctga-tttttttttaaagtcttgtatacaatgtt |
44385853 |
T |
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| Q |
301 |
agacttctcataatcgtctcgattgcacaatctggataaatcctgtttgaatattataatttgaaagggaaaaaacaagagattttagggggttttaaaa |
400 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
44385852 |
agacttctcataatcgtttcgattgcacaatctggataaatcctgtttgaatatt--------------aaaaaacaagaaattttagggggttttaaaa |
44385767 |
T |
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