View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2785_low_7 (Length: 405)

Name: NF2785_low_7
Description: NF2785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2785_low_7
NF2785_low_7
[»] chr8 (4 HSPs)
chr8 (18-311)||(8843784-8844081)
chr8 (326-386)||(8844107-8844167)
chr8 (66-208)||(18684310-18684462)
chr8 (66-208)||(18729875-18730027)
[»] chr7 (8 HSPs)
chr7 (96-208)||(4167076-4167188)
chr7 (96-174)||(20123209-20123287)
chr7 (66-208)||(29525110-29525257)
chr7 (96-208)||(20122617-20122729)
chr7 (96-168)||(4163395-4163467)
chr7 (104-177)||(20008286-20008359)
chr7 (96-168)||(29527149-29527221)
chr7 (18-67)||(48058343-48058393)
[»] chr2 (3 HSPs)
chr2 (96-208)||(26233887-26233997)
chr2 (96-168)||(26234812-26234884)
chr2 (18-64)||(13337613-13337660)
[»] chr1 (3 HSPs)
chr1 (108-208)||(48518526-48518626)
chr1 (100-208)||(5217267-5217373)
chr1 (67-199)||(17537009-17537147)
[»] chr3 (4 HSPs)
chr3 (66-208)||(264299-264446)
chr3 (119-174)||(40145006-40145061)
chr3 (66-168)||(263534-263641)
chr3 (18-67)||(4171104-4171154)
[»] chr4 (4 HSPs)
chr4 (96-208)||(24195620-24195733)
chr4 (96-188)||(21435438-21435530)
chr4 (96-168)||(21436201-21436273)
chr4 (126-168)||(24196384-24196426)
[»] chr5 (7 HSPs)
chr5 (96-188)||(23237079-23237171)
chr5 (96-188)||(42995256-42995348)
chr5 (57-168)||(10555373-10555489)
chr5 (96-188)||(33767260-33767352)
chr5 (96-168)||(33766523-33766595)
chr5 (96-168)||(42994515-42994587)
chr5 (96-168)||(23244297-23244369)
[»] chr6 (2 HSPs)
chr6 (96-188)||(25345524-25345616)
chr6 (96-168)||(25344884-25344956)


Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 8843784 - 8844081
Alignment:
Q  18 cagagaccggtgaaacagaaatacaaacgaaatgcgtcgtatataggcggg---atatattgactctaaaa-taactctaaatactccatatcctcaccc 113  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||   ||||||||||||||||| ||||| ||||||||||||||||||||||    
T  8843784 cagagaccggtgaaacagaaatacaaacgaaatgcgccgtatataggcggggggatatattgactctaaaagtaactataaatactccatatcctcaccc 8843883  T
Q  114 actattttatctaaatttagtggactagatttaattcttattaataatcatgtgatgtcatctacttaatcatttacacaatattagttaagattatgat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||    
T  8843884 actattttatctaaatttagtggactagatttaattcttattaataatcatgtgatctcgtctacttaatcatttacacaatattaattaagattatgat 8843983  T
Q  214 ttccctcttcttcttttttgaacaaatgatttccttcttttgactcgataaaccttaataataatcccatnnnnnnnnttaataatcatgtgatgaga 311  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||    
T  8843984 ttccctcttttttttttttgaacaaatgatttccttcttttgactcgataaaccttaataataatcccataaaaaaaattaataatcatgtgatgaga 8844081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 326 - 386
Target Start/End: Original strand, 8844107 - 8844167
Alignment:
Q  326 caacgcctaaccttacgatactcaattgttaccatcaattgacaaattaaatcatgtctaa 386  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8844107 caacgcctaaccttacaatactcaattgttaccatcaattgacaaattaaatcatgtctaa 8844167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 66 - 208
Target Start/End: Original strand, 18684310 - 18684462
Alignment:
Q  66 gggatatattgactctaa-aataactctaaa----tactccatatcctcacccactattttatctaaatttagtggactagatttaattcttat-----t 155  Q
    ||||||||||||||| || ||||| ||||||    ||||||| |||||||||| | |||||||||||||||| || |||| |||||  ||||||     |    
T  18684310 gggatatattgactccaagaataagtctaaaaagttactccacatcctcaccctccattttatctaaatttaatgaactaaatttatgtcttattataat 18684409  T
Q  156 aataatcatgtgatgtcatctacttaatcatttacacaatattagttaagatt 208  Q
    ||| |||||||||| |||||||| ||||||||| |||||||||| ||| ||||    
T  18684410 aatcatcatgtgatctcatctacctaatcattttcacaatattaattatgatt 18684462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 66 - 208
Target Start/End: Original strand, 18729875 - 18730027
Alignment:
Q  66 gggatatattgactctaa-aataactctaaa----tactccatatcctcacccactattttatctaaatttagtggactagatttaattcttat-----t 155  Q
    ||||||||||||||| || ||||| ||||||    ||||||| |||||||||| | |||||||||||||||| || |||| |||||  ||||||     |    
T  18729875 gggatatattgactccaagaataagtctaaaaagttactccacatcctcaccctccattttatctaaatttaatgaactaaatttatgtcttattataat 18729974  T
Q  156 aataatcatgtgatgtcatctacttaatcatttacacaatattagttaagatt 208  Q
    ||| |||||||||| |||||||| ||||||||| |||||||||| ||| ||||    
T  18729975 aatcatcatgtgatctcatctacctaatcattttcacaatattaattatgatt 18730027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 4167188 - 4167076
Alignment:
Q  96 tactccatatcctcacccactattttatctaaatttagtggactagatttaattcttattaataatcatgtgatgtcatctacttaatcatttacacaat 195  Q
    ||||||| |||||||||| | |||||||||||||||| ||||||||||||||||||| |||||||||||| ||| ||| |||| ||||||||| ||||||    
T  4167188 tactccacatcctcaccctccattttatctaaatttaatggactagatttaattctttttaataatcatgggatctcacctacctaatcattttcacaat 4167089  T
Q  196 attagttaagatt 208  Q
    |||| ||| ||||    
T  4167088 attaattatgatt 4167076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 96 - 174
Target Start/End: Complemental strand, 20123287 - 20123209
Alignment:
Q  96 tactccatatcctcacccactattttatctaaatttagtggactagatttaattcttattaataatcatgtgatgtcat 174  Q
    ||||||| |||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  20123287 tactccacatcctcaccctccattttatctaaatttaatggactagatttaattcttattaataatcatgtgatctcat 20123209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 66 - 208
Target Start/End: Original strand, 29525110 - 29525257
Alignment:
Q  66 gggatatattgactctaaaa-taactctaaa----tactccatatcctcacccactattttatctaaatttagtggactagatttaattcttattaataa 160  Q
    ||||||||||||||| || | ||||||||||    ||||||| |||||| ||| | |||||||| || |||| |||||||||||||| ||||| ||||||    
T  29525110 gggatatattgactccaagagtaactctaaagagttactccacatcctcgccctccattttatcaaagtttaatggactagatttaagtcttactaataa 29525209  T
Q  161 tcatgtgatgtcatctacttaatcatttacacaatattagttaagatt 208  Q
    ||||||||| |||||||| |||||||| ||||||||||| ||| ||||    
T  29525210 tcatgtgatctcatctacctaatcattcacacaatattaattacgatt 29525257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 20122617 - 20122729
Alignment:
Q  96 tactccatatcctcacccactattttatctaaatttagtggactagatttaattcttattaataatcatgtgatgtcatctacttaatcatttacacaat 195  Q
    ||||||| |||||||||| | |||||||||||||||| |||| ||||||||  |||||||||||||||| |||| |||||||| |||||||||  |||||    
T  20122617 tactccagatcctcaccctccattttatctaaatttaatggattagatttatatcttattaataatcatatgatctcatctacctaatcatttttacaat 20122716  T
Q  196 attagttaagatt 208  Q
    |||| ||| ||||    
T  20122717 attaattatgatt 20122729  T

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Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 4163395 - 4163467
Alignment:
Q  96 tactccatatcctcacccactattttatctaaatttagtggactagatttaattcttattaataatcatgtga 168  Q
    ||||||| |||||||||| | |||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  4163395 tactccacatcctcaccctccattttatctaaatttaatggactagatttaatacttattaataatcatgtga 4163467  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 20008286 - 20008359
Alignment:
Q  104 atcctcacccactattttatctaaatttagtggactagatttaattcttattaataatcatgtgatgtcatcta 177  Q
    |||||||| | | |||||||||||||||| ||||| |||||||  | |||||||||||||| |||| |||||||    
T  20008286 atcctcactctccattttatctaaatttaatggacaagatttatatgttattaataatcatatgatctcatcta 20008359  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 29527221 - 29527149
Alignment:
Q  96 tactccatatcctcacccactattttatctaaatttagtggactagatttaattcttattaataatcatgtga 168  Q
    ||||||| ||| |||||| | |||||||  ||||||| |||||||||||||||| ||||||  ||||||||||    
T  29527221 tactccacatcgtcaccctccattttattaaaatttaatggactagatttaatttttattaccaatcatgtga 29527149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 48058343 - 48058393
Alignment:
Q  18 cagagaccggtgaaacaga-aatacaaacgaaatgcgtcgtatataggcgg 67  Q
    ||||||||||||||| ||| ||||||||||||| ||||| |||||||||||    
T  48058343 cagagaccggtgaaatagagaatacaaacgaaaggcgtcatatataggcgg 48058393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 26233887 - 26233997
Alignment:
Q  96 tactccatatcctcacccactattttatctaaatttagtggactagatttaattcttattaataatcatgtgatgtcatctacttaatcatttacacaat 195  Q
    ||||||| |||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||  ||| ||||||||| ||||||    
T  26233887 tactccacatcctcaccctccattttatctaaatttaatggactagatttaattcttattaataatcatgggatctca--tacctaatcattttcacaat 26233984  T
Q  196 attagttaagatt 208  Q
    |||| ||| ||||    
T  26233985 attaattatgatt 26233997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 26234884 - 26234812
Alignment:
Q  96 tactccatatcctcacccactattttatctaaatttagtggactagatttaattcttattaataatcatgtga 168  Q
    ||||||| |||||||||  ||||||||||  |||||| |||| ||||||||||||||||||||||||||||||    
T  26234884 tactccacatcctcaccttctattttatcagaatttaatggattagatttaattcttattaataatcatgtga 26234812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 13337660 - 13337613
Alignment:
Q  18 cagagaccggtgaaacaga-aatacaaacgaaatgcgtcgtatatagg 64  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||||||||    
T  13337660 cagagaccggtgaaacagagaatacaaacaaaaggcgtcgtatatagg 13337613  T

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Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 48518626 - 48518526
Alignment:
Q  108 tcacccactattttatctaaatttagtggactagatttaattcttattaataatcatgtgatgtcatctacttaatcatttacacaatattagttaagat 207  Q
    |||||| |||||||||||||||||| |||| ||||||||| ||||||||||||| ||||||| |||||||| |||||||| ||||||||||| ||| |||    
T  48518626 tcaccctctattttatctaaatttaatggattagatttaagtcttattaataataatgtgatctcatctacctaatcattcacacaatattaattacgat 48518527  T
Q  208 t 208  Q
    |    
T  48518526 t 48518526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 100 - 208
Target Start/End: Complemental strand, 5217373 - 5217267
Alignment:
Q  100 ccatatcctcacccactattttatctaaatttagtggactagatttaattcttattaataatcatgtgatgtcatctacttaatcatttacacaatatta 199  Q
    |||||||||||||| | ||||||||||||| || ||||||| |||||  ||||||||||||||  ||||| |||||||| ||||||||| ||||||||||    
T  5217373 ccatatcctcaccctccattttatctaaatataatggactaaatttatgtcttattaataatc--gtgatctcatctacctaatcattttcacaatatta 5217276  T
Q  200 gttaagatt 208  Q
     ||| ||||    
T  5217275 attatgatt 5217267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 199
Target Start/End: Original strand, 17537009 - 17537147
Alignment:
Q  67 ggatatattgactctaaaa-taactctaaa----tactccatatcctcacccactattttatctaaatttagtggactagatttaattcttattaataat 161  Q
    |||||||||||||| |||| ||||||||||    ||||||| ||||||||||   ||||||| ||||| || || | ||  |||||||||||||||| ||    
T  17537009 ggatatattgactccaaaagtaactctaaagagttactccacatcctcacccttcattttatataaatctattgcattaagtttaattcttattaattat 17537108  T
Q  162 catgtgatgtcatcta-cttaatcatttacacaatatta 199  Q
    ||| |||| ||||||| ||||| ||||  ||||||||||    
T  17537109 catatgatctcatctaccttaaccattctcacaatatta 17537147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 66 - 208
Target Start/End: Complemental strand, 264446 - 264299
Alignment:
Q  66 gggatatattgactctaaaa-taactctaaa----tactccatatcctcacccactattttatctaaatttagtggactagatttaattcttattaataa 160  Q
    ||||||||||||||| || | ||||||||||    ||||||| |||||  ||| | |||||||| || |||| |||||||||||||| ||||| ||||||    
T  264446 gggatatattgactccaagagtaactctaaagagttactccacatccttgccctccattttatcaaagtttaatggactagatttaagtcttactaataa 264347  T
Q  161 tcatgtgatgtcatctacttaatcatttacacaatattagttaagatt 208  Q
    ||||||||| |||||||| |||||||| ||||||||||| ||| ||||    
T  264346 tcatgtgatctcatctacctaatcattcacacaatattaattatgatt 264299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 40145061 - 40145006
Alignment:
Q  119 tttatctaaatttagtggactagatttaattcttattaataatcatgtgatgtcat 174  Q
    ||||||||| |||| | ||||| |||||||||||||||||||||||||||| ||||    
T  40145061 tttatctaattttaatagactaaatttaattcttattaataatcatgtgatctcat 40145006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 168
Target Start/End: Original strand, 263534 - 263641
Alignment:
Q  66 gggatatattgactctaaaa-taactctaaa----tactccatatcctcacccactattttatctaaatttagtggactagatttaattcttattaataa 160  Q
    ||||||||||||||| || | ||||||||||    ||||||| |||||||||| | |||||||  ||||||| |||| ||| ||||||||||||||  ||    
T  263534 gggatatattgactccaagagtaactctaaagagttactccacatcctcaccctccattttattaaaatttaatggattagttttaattcttattaccaa 263633  T
Q  161 tcatgtga 168  Q
    ||||||||    
T  263634 tcatgtga 263641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 4171154 - 4171104
Alignment:
Q  18 cagagaccggtgaaacaga-aatacaaacgaaatgcgtcgtatataggcgg 67  Q
    |||||||||||||||| || ||||||||| ||| |||||||||||||||||    
T  4171154 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcgg 4171104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 24195620 - 24195733
Alignment:
Q  96 tactccatatcctcacccactattttatctaaa-tttagtggactagatttaattcttattaataatcatgtgatgtcatctacttaatcatttacacaa 194  Q
    ||||||| |||||| ||| | |||||||  ||| |||| |||||||||||||| ||||| ||||||||||||||| |||||||| |||||||| ||||||    
T  24195620 tactccacatcctcgccctccattttatacaaagtttaatggactagatttaaatcttactaataatcatgtgatctcatctacctaatcattcacacaa 24195719  T
Q  195 tattagttaagatt 208  Q
    ||||| ||| ||||    
T  24195720 tattaattacgatt 24195733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 96 - 188
Target Start/End: Original strand, 21435438 - 21435530
Alignment:
Q  96 tactccatatcctcacccactattttatctaaatttagtggactagatttaattcttattaataatcatgtgatgtcatctacttaatcattt 188  Q
    ||||||| |||||||||| | ||||||||||||||||  |||| |||||||    |||||||||||||| |||| |||||||| |||||||||    
T  21435438 tactccacatcctcaccctccattttatctaaatttaaaggacaagatttatgggttattaataatcatatgatctcatctacctaatcattt 21435530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 21436273 - 21436201
Alignment:
Q  96 tactccatatcctcacccactattttatctaaatttagtggactagatttaattcttattaataatcatgtga 168  Q
    ||||||| ||||||||||   | ||||||||| |||| ||||||| |||| || |||||||||||||||||||    
T  21436273 tactccacatcctcacccttcaatttatctaattttaatggactaaatttgatgcttattaataatcatgtga 21436201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 24196426 - 24196384
Alignment:
Q  126 aaatttagtggactagatttaattcttattaataatcatgtga 168  Q
    ||||||| |||||||||||||||||||||||  ||||||||||    
T  24196426 aaatttaatggactagatttaattcttattaccaatcatgtga 24196384  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 96 - 188
Target Start/End: Original strand, 23237079 - 23237171
Alignment:
Q  96 tactccatatcctcacccactattttatctaaatttagtggactagatttaattcttattaataatcatgtgatgtcatctacttaatcattt 188  Q
    ||||||| |||||||||| | |||||||||||||||| ||||| |||||||    |||||||||||||| |||| |||||||| |||||||||    
T  23237079 tactccacatcctcaccctccattttatctaaatttaatggacaagatttatgggttattaataatcatatgatctcatctacctaatcattt 23237171  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 42995348 - 42995256
Alignment:
Q  96 tactccatatcctcacccactattttatctaaatttagtggactagatttaattcttattaataatcatgtgatgtcatctacttaatcattt 188  Q
    ||||||| |||||||||| | |||||||||||||||| ||||| |||||||    |||||||||||||| | || |||||||| |||||||||    
T  42995348 tactccacatcctcaccctccattttatctaaatttaatggacaagatttatcggttattaataatcatatcatctcatctacctaatcattt 42995256  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 168
Target Start/End: Original strand, 10555373 - 10555489
Alignment:
Q  57 tatataggcgggatatattgactctaaaa-taactctaaa----tactccatatcctcacccactattttatctaaatttagtggactagatttaattct 151  Q
    |||||||| ||||||||||||||| || | ||| ||||||    ||||||| ||||||||||   | ||||||||| |||| |||||||||||| || ||    
T  10555373 tatataggagggatatattgactccaagagtaagtctaaagagttactccacatcctcacccttcaatttatctaattttaatggactagatttgatgct 10555472  T
Q  152 tattaataatcatgtga 168  Q
    |||||||||||||||||    
T  10555473 tattaataatcatgtga 10555489  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 33767352 - 33767260
Alignment:
Q  96 tactccatatcctcacccactattttatctaaatttagtggactagatttaattcttattaataatcatgtgatgtcatctacttaatcattt 188  Q
    ||||||| |||||||||| | |||||||||||||||| ||| | |||||||    |||||||||||||| |||| ||||||||  ||||||||    
T  33767352 tactccacatcctcaccctccattttatctaaatttaatggccaagatttataggttattaataatcatatgatctcatctacccaatcattt 33767260  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 33766523 - 33766595
Alignment:
Q  96 tactccatatcctcacccactattttatctaaatttagtggactagatttaattcttattaataatcatgtga 168  Q
    ||||||| ||||||||||   | ||||||||| |||| ||||||| |||| || |||||||||||||||||||    
T  33766523 tactccacatcctcacccttcaatttatctaattttaatggactatatttgatgcttattaataatcatgtga 33766595  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 42994515 - 42994587
Alignment:
Q  96 tactccatatcctcacccactattttatctaaatttagtggactagatttaattcttattaataatcatgtga 168  Q
    ||||||| ||||||||||   | ||||||||| ||||  ||||||||||| || |||||||||||||||||||    
T  42994515 tactccacatcctcacccttcaatttatctaattttaacggactagatttgatgcttattaataatcatgtga 42994587  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 23244369 - 23244297
Alignment:
Q  96 tactccatatcctcacccactattttatctaaatttagtggactagatttaattcttattaataatcatgtga 168  Q
    ||||||| ||||||||||   | ||||||||| |||| || ||||||||| || |||||| ||||||||||||    
T  23244369 tactccacatcctcacccttcaatttatctaattttaatgaactagatttgatgcttattgataatcatgtga 23244297  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 25345616 - 25345524
Alignment:
Q  96 tactccatatcctcacccactattttatctaaatttagtggactagatttaattcttattaataatcatgtgatgtcatctacttaatcattt 188  Q
    ||||||| |||||||||| | |||||||||||||||| || || |||||||    |||||||||||||| |||| ||||||||  ||||||||    
T  25345616 tactccacatcctcaccctccattttatctaaatttaatgaacaagatttataggttattaataatcatatgatttcatctacccaatcattt 25345524  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 25344884 - 25344956
Alignment:
Q  96 tactccatatcctcacccactattttatctaaatttagtggactagatttaattcttattaataatcatgtga 168  Q
    ||||||| ||||||||||   | ||||||||| |||| |||||||||||| ||  ||||||||||||||||||    
T  25344884 tactccacatcctcacccttcaatttatctaattttaatggactagatttgatggttattaataatcatgtga 25344956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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