View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2785_low_8 (Length: 351)

Name: NF2785_low_8
Description: NF2785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2785_low_8
NF2785_low_8
[»] chr2 (5 HSPs)
chr2 (184-332)||(34578867-34579015)
chr2 (184-332)||(34584616-34584764)
chr2 (184-330)||(34571401-34571547)
chr2 (184-330)||(34562604-34562753)
chr2 (195-286)||(13576386-13576477)
[»] chr8 (3 HSPs)
chr8 (195-316)||(41943982-41944103)
chr8 (213-320)||(25865756-25865863)
chr8 (213-320)||(44344011-44344110)
[»] chr1 (1 HSPs)
chr1 (205-315)||(7594101-7594211)
[»] chr5 (2 HSPs)
chr5 (195-288)||(12546996-12547089)
chr5 (195-254)||(12531530-12531589)


Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 184 - 332
Target Start/End: Complemental strand, 34579015 - 34578867
Alignment:
Q  184 aggaagtagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaagcatattcaact 283  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  34579015 aggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggtgaaggatattcaact 34578916  T
Q  284 tgctcatcgtatccgtggtgaacgtgcttagggttattgactagttact 332  Q
    ||||| |||||||||||||||||| |||||||||||| |||||||||||    
T  34578915 tgctcgtcgtatccgtggtgaacgagcttagggttatagactagttact 34578867  T

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Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 184 - 332
Target Start/End: Complemental strand, 34584764 - 34584616
Alignment:
Q  184 aggaagtagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaagcatattcaact 283  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  34584764 aggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggtgaaggatattcaact 34584665  T
Q  284 tgctcatcgtatccgtggtgaacgtgcttagggttattgactagttact 332  Q
    ||||| |||||||||||||||||| |||||||||||| |||||||||||    
T  34584664 tgctcgtcgtatccgtggtgaacgagcttagggttatagactagttact 34584616  T

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Target: chr2; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 184 - 330
Target Start/End: Complemental strand, 34571547 - 34571401
Alignment:
Q  184 aggaagtagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaagcatattcaact 283  Q
    |||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||  |||| ||||||||||    
T  34571547 aggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaact 34571448  T
Q  284 tgctcatcgtatccgtggtgaacgtgcttagggttattgactagtta 330  Q
    |||||  |||||||||||||||||||||||||| ||| || ||||||    
T  34571447 tgctcgccgtatccgtggtgaacgtgcttagggctatggattagtta 34571401  T

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Target: chr2; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 184 - 330
Target Start/End: Complemental strand, 34562753 - 34562604
Alignment:
Q  184 aggaagtagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaagcatattcaact 283  Q
    |||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||  |||| ||||||||||    
T  34562753 aggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaact 34562654  T
Q  284 tgctcatcgtatccgtggtgaa---cgtgcttagggttattgactagtta 330  Q
    ||||   |||||||||||||||   |||| ||||||||||||||||||||    
T  34562653 tgcttgccgtatccgtggtgaacgtcgtggttagggttattgactagtta 34562604  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 286
Target Start/End: Original strand, 13576386 - 13576477
Alignment:
Q  195 gaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaagcatattcaacttgc 286  Q
    ||||||||| | |||||||||||||||||||| ||| | ||||| ||||||||||||||| | ||  |||||  |||| |||||||||||||    
T  13576386 gaagcttatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagggttactattatgcctaaggatattcaacttgc 13576477  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 195 - 316
Target Start/End: Original strand, 41943982 - 41944103
Alignment:
Q  195 gaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaagcatattcaacttgctcatcgta 294  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| | ||  |||||   ||| | ||||||||||| |  ||||    
T  41943982 gaagcttatctggttggattgtttgaggataccaatttgtgtgcaattcatgctaagagggttacaattatgccaaaggacattcaacttgcacgccgta 41944081  T
Q  295 tccgtggtgaacgtgcttaggg 316  Q
    | ||||||||||||||||||||    
T  41944082 ttcgtggtgaacgtgcttaggg 41944103  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 213 - 320
Target Start/End: Original strand, 25865756 - 25865863
Alignment:
Q  213 ttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaagcatattcaacttgctcatcgtatccgtggtgaacgtgctt 312  Q
    |||||||||||||| ||||||||||||||||||||||||||| | ||  |||||   ||| ||||||| ||||||| |||||| ||||||||||||||||    
T  25865756 ttgtttgaggatactaatttgtgtgcaattcatgctaagagggtaacgattatgccaaaggatattcagcttgctcgtcgtattcgtggtgaacgtgctt 25865855  T
Q  313 agggttat 320  Q
    ||||||||    
T  25865856 agggttat 25865863  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 320
Target Start/End: Original strand, 44344011 - 44344110
Alignment:
Q  213 ttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaagcatattcaacttgctcatcgtatccgtggtgaacgtgctt 312  Q
    |||||||||||||||||||||||||| ||||||||||||||| | ||  |||||   ||| ||||||| ||        |||||||||||||||||||||    
T  44344011 ttgtttgaggataccaatttgtgtgctattcatgctaagagggtgacgattatgcccaaggatattcagct--------gtatccgtggtgaacgtgctt 44344102  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 205 - 315
Target Start/End: Complemental strand, 7594211 - 7594101
Alignment:
Q  205 tggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaagcatattcaacttgctcatcgtatccgtggtga 304  Q
    ||||||| ||||||||||| |||||| ||||||||||||||||||||||| | ||  |||||   ||| ||||||| ||||||| ||| || ||||||||    
T  7594211 tggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatattcagcttgctcgtcgcattcgtggtga 7594112  T
Q  305 acgtgcttagg 315  Q
    |||||||||||    
T  7594111 acgtgcttagg 7594101  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 288
Target Start/End: Complemental strand, 12547089 - 12546996
Alignment:
Q  195 gaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaagcatattcaacttgctc 288  Q
    ||||||||| | |||||||||||||| ||||| ||| | ||||| ||||||||||||||| | ||  | |||  |||| |||||||||||||||    
T  12547089 gaagcttatcttgttggtttgtttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaacttgctc 12546996  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 254
Target Start/End: Original strand, 12531530 - 12531589
Alignment:
Q  195 gaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagg 254  Q
    ||||||||| | |||||||||||||| ||||| ||| | ||||| |||||||||||||||    
T  12531530 gaagcttatcttgttggtttgtttgaagatactaatctctgtgccattcatgctaagagg 12531589  T

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