View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2786-Insertion-1 (Length: 813)

Name: NF2786-Insertion-1
Description: NF2786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2786-Insertion-1
NF2786-Insertion-1
[»] chr5 (20 HSPs)
chr5 (8-813)||(9002824-9003627)
chr5 (503-719)||(8677652-8677868)
chr5 (433-784)||(8643992-8644340)
chr5 (458-709)||(9074773-9075021)
chr5 (123-218)||(6296868-6296964)
chr5 (503-784)||(8636714-8636995)
chr5 (459-694)||(8535307-8535539)
chr5 (106-211)||(10635301-10635408)
chr5 (236-334)||(2905371-2905469)
chr5 (537-578)||(8641255-8641296)
chr5 (503-578)||(8548275-8548350)
chr5 (236-354)||(8548509-8548628)
chr5 (123-213)||(29814916-29815007)
chr5 (159-218)||(39107795-39107854)
chr5 (511-578)||(2905128-2905195)
chr5 (181-218)||(29859287-29859324)
chr5 (179-211)||(33674811-33674843)
chr5 (178-218)||(37322403-37322443)
chr5 (459-578)||(1600464-1600580)
chr5 (537-578)||(8528827-8528868)
[»] chr7 (6 HSPs)
chr7 (507-677)||(35779688-35779858)
chr7 (107-212)||(33084908-33085015)
chr7 (183-217)||(37829999-37830033)
chr7 (161-217)||(7879048-7879105)
chr7 (157-215)||(35451129-35451188)
chr7 (179-217)||(31939655-31939693)
[»] scaffold0627 (1 HSPs)
scaffold0627 (503-578)||(4507-4582)
[»] chr6 (6 HSPs)
chr6 (503-576)||(16716194-16716267)
chr6 (179-217)||(3535261-3535299)
chr6 (179-212)||(23402904-23402937)
chr6 (183-218)||(2477285-2477320)
chr6 (173-218)||(7099695-7099741)
chr6 (173-218)||(8794889-8794935)
[»] chr4 (5 HSPs)
chr4 (113-211)||(38020378-38020478)
chr4 (183-218)||(27112402-27112437)
chr4 (171-217)||(33801901-33801947)
chr4 (176-209)||(44286936-44286969)
chr4 (173-218)||(51421449-51421494)
[»] chr8 (5 HSPs)
chr8 (173-217)||(16622593-16622637)
chr8 (181-212)||(23689578-23689609)
chr8 (158-217)||(10995395-10995456)
chr8 (181-211)||(12165705-12165735)
chr8 (181-211)||(12410133-12410163)
[»] chr1 (9 HSPs)
chr1 (157-213)||(42535734-42535790)
chr1 (157-218)||(32398771-32398832)
chr1 (503-710)||(5130653-5130861)
chr1 (64-110)||(5130317-5130363)
chr1 (181-218)||(15535644-15535681)
chr1 (107-217)||(36472599-36472710)
chr1 (176-218)||(18635664-18635706)
chr1 (181-218)||(22544581-22544618)
chr1 (181-218)||(28308384-28308421)
[»] chr2 (6 HSPs)
chr2 (108-218)||(1652535-1652646)
chr2 (181-218)||(5251412-5251449)
chr2 (179-218)||(10223394-10223433)
chr2 (179-217)||(7648722-7648760)
chr2 (183-217)||(25728080-25728114)
chr2 (125-217)||(41508140-41508234)
[»] chr3 (5 HSPs)
chr3 (123-217)||(50574742-50574840)
chr3 (183-218)||(48308089-48308124)
chr3 (184-218)||(40111767-40111801)
chr3 (169-212)||(54913673-54913718)
chr3 (184-217)||(10428021-10428054)
[»] scaffold0179 (1 HSPs)
scaffold0179 (179-218)||(31014-31053)
[»] scaffold0071 (1 HSPs)
scaffold0071 (183-217)||(63452-63486)


Alignment Details
Target: chr5 (Bit Score: 717; Significance: 0; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 8 - 813
Target Start/End: Original strand, 9002824 - 9003627
Alignment:
Q  8 tttttcattaacagtgagagctaagatataattaaatgtggtagataacaaaaagcaactaaaattataacaaatataaacagcaccataaatagattag 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9002824 tttttcattaacagtgagagctaagatataattaaatgtggtagataacaaaaagcaactaaaattataacaaatataaacaacaccataaatagattag 9002923  T
Q  108 ttggatagctgaacaggtttgagctaagggttgaggagttggaggtaccggttcaaacccaagcgaaggagaaaaattaatctaacaactaattactaac 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9002924 ttggatagctgaacaggtttgagctaagggttgaggagttggaggtaccggttcaaacccaagcgaaggagaaaaactaatctaacaactaattactaac 9003023  T
Q  208 atttgtcattacnnnnnnnnnnnncatgaatagattagttgtaaaatcaattgattgatcaaacatgacaaccttaggtgatgagatctataggtaacaa 307  Q
    ||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9003024 atttgtcattacaaaaaaaaaa--catgaatagattagttgtaaaatcaattgattgatcaaacatgacaaccttaggtgatgagatctataggtaacaa 9003121  T
Q  308 caagccttcctttctccaaatagaatggaaaaaaggaagttaaaataggtaacatcaaattcatgagtttttaaaaggaagttaaaatacgtgtcttaca 407  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  9003122 caaaccttcctttctccaaatagaatggaaaaaaggaagttaaaataggtaacatcaagttcatgagtttttaaaaggaagttaaaatacgtgtcttacg 9003221  T
Q  408 attaaaattaattacgatttcaaaaggagcatcaaattcaattacctaatgaaaatcaaatattagaagctacatccttacctccttgagtaggcattca 507  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9003222 attaaaattaattacgatttcaaaaggagcatcaaatttaattacttaatgaaaatcaaatattagaagctacatccttacctccttgagtagacattca 9003321  T
Q  508 acacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattacttcagctaattttgattgagcccggtgaactcg 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |    
T  9003322 acacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattacttcaactaattttgattgagccccgtgaacttg 9003421  T
Q  608 aaaaactttgaatccatgtttctcgggttcatagtagactaaacaattgtacgattcataaaacaatatgcaagcactctcttcaaacagttttaccggc 707  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9003422 aaaaactctgaatccatgtttctcgggttcatagtagactaaacaattgtacgattcataaaacaatatgcaagcactctcttcaaacagttttaccggc 9003521  T
Q  708 caacaaaaaccactagacggatattcaggtatgcccaaaggaccggcggaagtatcaatgctgtaaaccttagtccaagaccatactccttcataaccca 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9003522 caacaaaaaccactagacggatattcaggtatgcccaaaggaccggcggaagtatcaatgctgtaaaccttagtccaagaccatactccttcataaccca 9003621  T
Q  808 agttgc 813  Q
    ||||||    
T  9003622 agttgc 9003627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 503 - 719
Target Start/End: Original strand, 8677652 - 8677868
Alignment:
Q  503 attcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattacttcagctaattttgattgagcccggtga 602  Q
    ||||| |||||||| ||||||||| || ||| | ||||||||||||||||||||||||| ||||||||||| |||| | ||||  ||   ||  | ||||    
T  8677652 attcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaacaaattcggaagaagtgccgtga 8677751  T
Q  603 actcgaaaaactttgaatccatgtttctcgggttcatagtagactaaacaattgtacgattcataaaacaatatgcaagcactctcttcaaacagtttta 702  Q
    | ||||||||||||||| |||||||||||||||||||||||||  | ||||||| | || | ||| |||||||||  ||||| |||||||||  ||||||    
T  8677752 attcgaaaaactttgaaaccatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagcaccctcttcaaagtgtttta 8677851  T
Q  703 ccggccaacaaaaacca 719  Q
    |||||||||| ||||||    
T  8677852 ccggccaacataaacca 8677868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 433 - 784
Target Start/End: Original strand, 8643992 - 8644340
Alignment:
Q  433 ggagcatcaaattcaattacctaatgaaaatcaaatattagaagctacatccttacctccttgagtaggcattcaacacctcaacattgtctccatttac 532  Q
    ||||||||||||||||||    ||| ||||| |||| |||| |||||||| |||||||   ||||| |  ||||| || ||||  ||||||||| || ||    
T  8643992 ggagcatcaaattcaatttgtcaatcaaaataaaatcttagcagctacattcttacct---tgagtggatattcagcatctcagtattgtctcctttcac 8644088  T
Q  533 agcctccttcaatgagattagacttggaatatgtggaattacttcagctaattttgattgagcccggtgaactcgaaaaactttgaatccatgtttctcg 632  Q
    | | ||||||||||||||||||||||||| ||||||||||| |||| | ||||  ||   |   | ||||| |||||||||||||||  ||||||||| |    
T  8644089 aacatccttcaatgagattagacttggaacatgtggaattatttcaacaaattcggaagaaatgccgtgaattcgaaaaactttgaaagcatgtttcttg 8644188  T
Q  633 ggttcatagtagactaaacaattgtacgattcataaaacaatatgcaagcactctcttcaaacagttttaccggccaacaaaaaccactagacggatatt 732  Q
    |||||||||||||  | ||||||| | || | ||| |||||||||  ||| | |||||||||   ||||||||||||||| ||||||  |  | |  | |    
T  8644189 ggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagttttttaccggccaacataaaccataacgctgcgaat 8644288  T
Q  733 caggtatgcccaaaggaccggcggaagtatcaatgctgtaaaccttagtcca 784  Q
    ||||| |||||||||||| |    ||||||||||| ||||||||||||||||    
T  8644289 caggtctgcccaaaggactgatcaaagtatcaatgttgtaaaccttagtcca 8644340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 458 - 709
Target Start/End: Complemental strand, 9075021 - 9074773
Alignment:
Q  458 gaaaatcaaatattagaagctacatccttacctccttgagtaggcattcaacacctcaacattgtctccatttacagcctccttcaatgagattagactt 557  Q
    |||||| || ||||||||||||||| |||||||   ||||| |  ||||| |||||| | ||||||||| || |   | ||||||||||| |||||||||    
T  9075021 gaaaataaagtattagaagctacattcttacct---tgagtggatattcagcacctcgatattgtctcctttcaagacatccttcaatgaaattagactt 9074925  T
Q  558 ggaatatgtggaattacttcagctaattttgattgagcccggtgaactcgaaaaactttgaatccatgtttctcgggttcatagtagactaaacaattgt 657  Q
    ||||||||||| |||||||||   || ||||| |||  ||  |||| |||||||||||||||||||| |||||| ||||||||| |||  ||||||||||    
T  9074924 ggaatatgtgggattacttcaaaaaactttgaatgactcccatgaattcgaaaaactttgaatccatatttctcaggttcatagaagataaaacaattgt 9074825  T
Q  658 acgattcataaaacaatatgcaagcactctcttcaaacagttttaccggcca 709  Q
    |  | | ||| |||||||||  |||||  ||||||||  |||||| ||||||    
T  9074824 agcaatgatataacaatatggcagcaccttcttcaaagtgttttatcggcca 9074773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 6296868 - 6296964
Alignment:
Q  123 ggtttgagctaagggttgaggagttggaggtaccgg-ttcaaacccaagcgaaggagaaaaattaatctaacaactaattactaacatttgtcatta 218  Q
    ||||||||||||||| | ||||||||||||| | || ||||||||||  | ||||||||||| |||||||||||||||||||||||||||| |||||    
T  6296868 ggtttgagctaagggataaggagttggaggttctgggttcaaacccagacaaaggagaaaaactaatctaacaactaattactaacatttgccatta 6296964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 503 - 784
Target Start/End: Original strand, 8636714 - 8636995
Alignment:
Q  503 attcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattacttcagctaattttgattgagcccggtga 602  Q
    ||||| |||||| | ||||||||| || ||  | ||||||||||||||||||||||||| ||||||||||| |||| | || |  ||   ||  |  |||    
T  8636714 attcagcacctcgatattgtctcctttcacgacatccttcaatgagattagacttggaacatgtggaattatttcaacaaactcggaagaagtgccttga 8636813  T
Q  603 actcgaaaaactttgaatccatgtttctcgggttcatagtagactaaacaattgtacgattcataaaacaatatgcaagcactctcttcaaacagtttta 702  Q
    | || |||||||||||| ||| |||||||||||||||||||||  | ||||||| | || | ||| |||||||||  ||| | |||||||||  ||||||    
T  8636814 attctaaaaactttgaaaccaagtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgtttta 8636913  T
Q  703 ccggccaacaaaaaccactagacggatattcaggtatgcccaaaggaccggcggaagtatcaatgctgtaaaccttagtcca 784  Q
    ||||||| || | ||||  |  | |  | |||||| |||||||||||| | |  ||||||| ||| ||||||||||||||||    
T  8636914 ccggccatcatataccataacgctgcgaatcaggtctgcccaaaggactgaccaaagtatcgatgttgtaaaccttagtcca 8636995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 459 - 694
Target Start/End: Original strand, 8535307 - 8535539
Alignment:
Q  459 aaaatcaaatattagaagctacatccttacctccttgagtaggcattcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttg 558  Q
    ||||| |||| ||||||||||||| |||||||   ||||| |  |||||  ||||||| |||||| || || | | | ||||||||||| ||||||||||    
T  8535307 aaaataaaatcttagaagctacattcttacct---tgagtggatattcagaacctcaatattgtcacctttcaaaacatccttcaatgaaattagacttg 8535403  T
Q  559 gaatatgtggaattacttcagctaattttgattgagcccggtgaactcgaaaaactttgaatccatgtttctcgggttcatagtagactaaacaattgta 658  Q
    |||| ||||| |||||||||   || |||||   |  || || || ||||||||||| |||||||| |||||| |||||||||||||  ||||||||| |    
T  8535404 gaatgtgtgggattacttcaaaaaaatttgaactactcccgtaaattcgaaaaacttcgaatccatatttctcaggttcatagtagataaaacaattgca 8535503  T
Q  659 cgattcataaaacaatatgcaagcactctcttcaaa 694  Q
     || | ||| |||||||||  |||||  ||||||||    
T  8535504 ggaatgatataacaatatggcagcaccttcttcaaa 8535539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 10635408 - 10635301
Alignment:
Q  106 agttggatagctgaacaggtttgagctaagggttgaggagttggaggtaccgg-ttcaaacccaagcgaaggag-aaaaattaatctaacaactaattac 203  Q
    |||||| ||||| ||| ||||||||||||||| | ||||||||||||| | || |||||||||  ||||||||| ||||| | |||||| ||||||||||    
T  10635408 agttgggtagctcaactggtttgagctaagggataaggagttggaggtcctggcttcaaacccgggcgaaggagaaaaaaatgatctaagaactaattac 10635309  T
Q  204 taacattt 211  Q
    ||||||||    
T  10635308 taacattt 10635301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 236 - 334
Target Start/End: Complemental strand, 2905469 - 2905371
Alignment:
Q  236 aatagattagttgtaaaatcaattgattgatcaaacatgacaaccttaggtgatgagatctataggtaacaacaagccttcctttctccaaatagaatg 334  Q
    ||||||||||||||||||| |||| |||||| | | || ||||||||| ||||  ||||||||| |||| ||||||| |||||||| |||| |||||||    
T  2905469 aatagattagttgtaaaattaattaattgatgataaatcacaaccttaagtgagaagatctatatgtaataacaagcattcctttcaccaactagaatg 2905371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 537 - 578
Target Start/End: Original strand, 8641255 - 8641296
Alignment:
Q  537 tccttcaatgagattagacttggaatatgtggaattacttca 578  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8641255 tccttcaatgagattagacttggaatatgtggaattacttca 8641296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 503 - 578
Target Start/End: Complemental strand, 8548350 - 8548275
Alignment:
Q  503 attcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattacttca 578  Q
    ||||| |||||||| ||||||||| || |   | |||||||||||||||||||||||||||||| |||||||||||    
T  8548350 attcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatgttgaattacttca 8548275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 236 - 354
Target Start/End: Complemental strand, 8548628 - 8548509
Alignment:
Q  236 aatagattagttgtaaaatcaattgattgatcaaacatgacaaccttaggtgatgagatctataggtaacaacaagccttcctttctccaaatagaatg- 334  Q
    |||| ||||||||||||| ||| |||||||  || ||| | ||||||| ||||  |||||| ||  ||||||||||||||||||| |||||||||||||     
T  8548628 aatatattagttgtaaaagcaaatgattgagaaatcatcataaccttaagtgagaagatctgtacttaacaacaagccttcctttatccaaatagaatgc 8548529  T
Q  335 gaaaaaaggaagttaaaata 354  Q
     |||| |||||||| |||||    
T  8548528 caaaataggaagtttaaata 8548509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 213
Target Start/End: Complemental strand, 29815007 - 29814916
Alignment:
Q  123 ggtttgagctaagggttgaggagttggaggtacc-ggttcaaacccaagcgaaggagaaaaattaatctaacaactaattactaacatttgt 213  Q
    ||||||||||||||| | ||||||||||||| |  ||||||||||  | | ||||||||||| |||| |||||| |||||||||||||||||    
T  29815007 ggtttgagctaagggataaggagttggaggtcctaggttcaaacctgaacaaaggagaaaaactaatgtaacaaataattactaacatttgt 29814916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 39107795 - 39107854
Alignment:
Q  159 ttcaaacccaagcgaaggagaaaaattaatctaacaactaattactaacatttgtcatta 218  Q
    |||||||||||  |||||||||||| || ||||||||||||||||||||||||| |||||    
T  39107795 ttcaaacccaactgaaggagaaaaactattctaacaactaattactaacatttgccatta 39107854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 511 - 578
Target Start/End: Complemental strand, 2905195 - 2905128
Alignment:
Q  511 cctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattacttca 578  Q
    ||||||||||||||||||| ||  | || |||||||| |||||||||||||||||| |||| ||||||    
T  2905195 cctcaacattgtctccattcacgacatctttcaatgatattagacttggaatatgttgaataacttca 2905128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 29859287 - 29859324
Alignment:
Q  181 aaattaatctaacaactaattactaacatttgtcatta 218  Q
    |||||||||||||||||||||||||||||||| |||||    
T  29859287 aaattaatctaacaactaattactaacatttgacatta 29859324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 33674811 - 33674843
Alignment:
Q  179 aaaaattaatctaacaactaattactaacattt 211  Q
    |||||||||||||||||||||||||||||||||    
T  33674811 aaaaattaatctaacaactaattactaacattt 33674843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 37322443 - 37322403
Alignment:
Q  178 gaaaaattaatctaacaactaattactaacatttgtcatta 218  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  37322443 gaaaaattaatttaacaactaattactaacatttatcatta 37322403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 459 - 578
Target Start/End: Complemental strand, 1600580 - 1600464
Alignment:
Q  459 aaaatcaaatattagaagctacatccttacctccttgagtaggcattcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttg 558  Q
    ||||| ||||||| |||||||||| |||||||   ||||| |  ||||| |||||||| |||||| || || |   | ||||||||||| ||||||||||    
T  1600580 aaaataaaatatttgaagctacattcttacct---tgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagacttg 1600484  T
Q  559 gaatatgtggaattacttca 578  Q
    ||||||| || |||| ||||    
T  1600483 gaatatgcgggattatttca 1600464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 537 - 578
Target Start/End: Original strand, 8528827 - 8528868
Alignment:
Q  537 tccttcaatgagattagacttggaatatgtggaattacttca 578  Q
    ||||||||||| |||||||||||||| ||||| |||||||||    
T  8528827 tccttcaatgaaattagacttggaatgtgtgggattacttca 8528868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 6e-27; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 507 - 677
Target Start/End: Original strand, 35779688 - 35779858
Alignment:
Q  507 aacacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattacttcagctaattttgattgagcccggtgaactc 606  Q
    ||||| |||| ||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||||||| |  |||||||  ||| ||   ||| ||    
T  35779688 aacacttcaatattgtctccttttacaacatccttcaatgatattagacttggaatatgtggaattacttcaacagattttgaacgagtcccacgaattc 35779787  T
Q  607 gaaaaactttgaatccatgtttctcgggttcatagtagactaaacaattgtacgattcataaaacaatatg 677  Q
    ||||||||||| |||||| |||||| |||||| ||||||  ||||||||| | || | ||| |||||||||    
T  35779788 gaaaaactttgtatccatatttctcaggttcaaagtagataaaacaattgcatgaatgatataacaatatg 35779858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 212
Target Start/End: Complemental strand, 33085015 - 33084908
Alignment:
Q  107 gttggatagctgaacaggtttgagctaagggttgaggagttggaggtaccggttcaaacccaag-cgaaggagaaaaat-taatctaacaactaattact 204  Q
    ||||| ||||| ||| ||||||||||||||| |  |||||||||||| | || | ||| ||  | |||||||||||||  ||||||||||||||||||||    
T  33085015 gttgggtagctcaactggtttgagctaagggatatggagttggaggtcctgggttaaaacctggacgaaggagaaaaaactaatctaacaactaattact 33084916  T
Q  205 aacatttg 212  Q
    ||||||||    
T  33084915 aacatttg 33084908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 37829999 - 37830033
Alignment:
Q  183 attaatctaacaactaattactaacatttgtcatt 217  Q
    |||||||||||||||||||||||||||||||||||    
T  37829999 attaatctaacaactaattactaacatttgtcatt 37830033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 7879105 - 7879048
Alignment:
Q  161 caaacccaagcgaaggagaaaa-attaatctaacaactaattactaacatttgtcatt 217  Q
    ||||||||  |||||||| ||| ||||||||||||||||||| |||||||||||||||    
T  7879105 caaacccagacgaaggagtaaatattaatctaacaactaattgctaacatttgtcatt 7879048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 35451188 - 35451129
Alignment:
Q  157 ggttcaaacccaagcgaaggagaaaa-attaatctaacaactaattactaacatttgtca 215  Q
    ||||||||| ||| |||| ||| ||| |||||||||||||||||||| ||||||||||||    
T  35451188 ggttcaaactcaaacgaatgagtaaatattaatctaacaactaattattaacatttgtca 35451129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 217
Target Start/End: Original strand, 31939655 - 31939693
Alignment:
Q  179 aaaaattaatctaacaactaattactaacatttgtcatt 217  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  31939655 aaaaactaatctaacaactaattactaatatttgtcatt 31939693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 56; Significance: 9e-23; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 503 - 578
Target Start/End: Original strand, 4507 - 4582
Alignment:
Q  503 attcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattacttca 578  Q
    |||||||||||||| ||||||||| || || || ||||||||||||||||||||||||||||||||||||||||||    
T  4507 attcaacacctcaatattgtctcctttcacggcatccttcaatgagattagacttggaatatgtggaattacttca 4582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 503 - 576
Target Start/End: Original strand, 16716194 - 16716267
Alignment:
Q  503 attcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattactt 576  Q
    |||||||||||||| ||| ||||| || || || ||||||||||||||||||||||||||||||||||||||||    
T  16716194 attcaacacctcaatattctctcctttcacggcatccttcaatgagattagacttggaatatgtggaattactt 16716267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 217
Target Start/End: Original strand, 3535261 - 3535299
Alignment:
Q  179 aaaaattaatctaacaactaattactaacatttgtcatt 217  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  3535261 aaaaattaatctaacaactaattactaatatttgtcatt 3535299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 23402904 - 23402937
Alignment:
Q  179 aaaaattaatctaacaactaattactaacatttg 212  Q
    ||||||||||||||||||||||||||||||||||    
T  23402904 aaaaattaatctaacaactaattactaacatttg 23402937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 218
Target Start/End: Original strand, 2477285 - 2477320
Alignment:
Q  183 attaatctaacaactaattactaacatttgtcatta 218  Q
    ||||||||||||| ||||||||||||||||||||||    
T  2477285 attaatctaacaattaattactaacatttgtcatta 2477320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 7099741 - 7099695
Alignment:
Q  173 aaggagaaaaattaat-ctaacaactaattactaacatttgtcatta 218  Q
    |||||||||| ||||| |||||||||||||||||| |||||||||||    
T  7099741 aaggagaaaagttaatactaacaactaattactaatatttgtcatta 7099695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 8794889 - 8794935
Alignment:
Q  173 aaggagaaaaattaat-ctaacaactaattactaacatttgtcatta 218  Q
    |||||||||| ||||| |||||||||||||||||| |||||||||||    
T  8794889 aaggagaaaagttaatactaacaactaattactaatatttgtcatta 8794935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 38020378 - 38020478
Alignment:
Q  113 tagctgaacaggtttgagctaagggttgaggagttggaggtac-cggttcaaacccaagcgaaggag-aaaaattaatctaacaactaattactaacatt 210  Q
    ||||| ||| ||||||||||||||||| ||||||||||||| |  |||||||||||   |||||||| ||| ||||||||||||||| ||||||||||||    
T  38020378 tagctcaactggtttgagctaagggttaaggagttggaggtccaaggttcaaacccggacgaaggagtaaatattaatctaacaactgattactaacatt 38020477  T
Q  211 t 211  Q
    |    
T  38020478 t 38020478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 218
Target Start/End: Complemental strand, 27112437 - 27112402
Alignment:
Q  183 attaatctaacaactaattactaacatttgtcatta 218  Q
    ||||||||||||| ||||||||||||||||||||||    
T  27112437 attaatctaacaattaattactaacatttgtcatta 27112402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 33801947 - 33801901
Alignment:
Q  171 cgaaggagaaaaattaatctaacaactaattactaacatttgtcatt 217  Q
    ||||||| ||||| |||||||||||||||||||||| ||| ||||||    
T  33801947 cgaaggaaaaaaagtaatctaacaactaattactaatattggtcatt 33801901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 44286936 - 44286969
Alignment:
Q  176 gagaaaaattaatctaacaactaattactaacat 209  Q
    ||||||||||||||||||||| ||||||||||||    
T  44286936 gagaaaaattaatctaacaacaaattactaacat 44286969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 51421494 - 51421449
Alignment:
Q  173 aaggagaaaaattaatctaacaactaattactaacatttgtcatta 218  Q
    ||||||||||| |||| |||||| |||||||||||| |||||||||    
T  51421494 aaggagaaaaactaatataacaattaattactaacagttgtcatta 51421449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 16622637 - 16622593
Alignment:
Q  173 aaggagaaaaattaatctaacaactaattactaacatttgtcatt 217  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  16622637 aaggagaaaaactaatctaacaactaattactaacatttgtcatt 16622593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 212
Target Start/End: Complemental strand, 23689609 - 23689578
Alignment:
Q  181 aaattaatctaacaactaattactaacatttg 212  Q
    ||||||||||||||||||||||||||||||||    
T  23689609 aaattaatctaacaactaattactaacatttg 23689578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 10995395 - 10995456
Alignment:
Q  158 gttcaaacccaagcgaaggagaaaaa--ttaatctaacaactaattactaacatttgtcatt 217  Q
    ||||||||||| ||||||||||||||  |||||| |||||||||  ||||||||||| ||||    
T  10995395 gttcaaacccaggcgaaggagaaaaaatttaatccaacaactaaccactaacatttgccatt 10995456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 211
Target Start/End: Complemental strand, 12165735 - 12165705
Alignment:
Q  181 aaattaatctaacaactaattactaacattt 211  Q
    |||||||||||||||||||||||||||||||    
T  12165735 aaattaatctaacaactaattactaacattt 12165705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 211
Target Start/End: Complemental strand, 12410163 - 12410133
Alignment:
Q  181 aaattaatctaacaactaattactaacattt 211  Q
    |||||||||||||||||||||||||||||||    
T  12410163 aaattaatctaacaactaattactaacattt 12410133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 42535734 - 42535790
Alignment:
Q  157 ggttcaaacccaagcgaaggagaaaaattaatctaacaactaattactaacatttgt 213  Q
    ||||||||||||| ||||| |||||||  ||||||||||||||||||||||||||||    
T  42535734 ggttcaaacccaaacgaagaagaaaaacgaatctaacaactaattactaacatttgt 42535790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 32398771 - 32398832
Alignment:
Q  157 ggttcaaacccaagcgaaggagaaaaattaatctaacaactaattactaacatttgtcatta 218  Q
    ||||||||| ||  ||||||||||||| |||||||||||||||||||||| ||||| |||||    
T  32398771 ggttcaaactcagacgaaggagaaaaactaatctaacaactaattactaatatttgccatta 32398832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 503 - 710
Target Start/End: Original strand, 5130653 - 5130861
Alignment:
Q  503 attcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattacttcagctaattttgattgagcccggtga 602  Q
    ||||| |||||||| ||||||||| || |||   ||||| | ||| |||||||||| |||||||||||||||||||     ||||||   || ||  |||    
T  5130653 attcagcacctcaatattgtctcctttcacaatatcctttagtgaaattagacttgaaatatgtggaattacttcaatcttttttgaacaagtcccatga 5130752  T
Q  603 actcgaaaaactttgaatccatgtttctcgggttcatagt-agactaaacaattgtacgattcataaaacaatatgcaagcactctcttcaaacagtttt 701  Q
    | ||||||||||||| ||| || |||||| ||||||| || |||| ||||| ||| | || | ||| | |||||||  ||||| |||||||||  |||||    
T  5130753 attcgaaaaactttgtatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgtttt 5130852  T
Q  702 accggccaa 710  Q
    |||||||||    
T  5130853 accggccaa 5130861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 5130317 - 5130363
Alignment:
Q  64 aactaaaattataacaaatataaacagcaccataaatagattagttg 110  Q
    ||||||| |||||||||||||||||| |||||| |||||||||||||    
T  5130317 aactaaagttataacaaatataaacaacaccatcaatagattagttg 5130363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 15535681 - 15535644
Alignment:
Q  181 aaattaatctaacaactaattactaacatttgtcatta 218  Q
    |||||||||||||||||||||||||||||||| |||||    
T  15535681 aaattaatctaacaactaattactaacatttgacatta 15535644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 217
Target Start/End: Complemental strand, 36472710 - 36472599
Alignment:
Q  107 gttggatagctgaacaggtttgagctaagggttgaggagttggaggtac-cggttcaaacccaagcgaagga-gaaaaattaatctaacaactaattact 204  Q
    ||||| ||||| ||| ||| ||||||||||| | ||||||||||||| |  |||||||||||   | ||||| |||||| ||||||||||||||| ||||    
T  36472710 gttgggtagctcaactggtctgagctaagggataaggagttggaggtcctgggttcaaacccggacaaaggaggaaaaactaatctaacaactaa-tact 36472612  T
Q  205 aacatttgtcatt 217  Q
    ||||| |||||||    
T  36472611 aacatctgtcatt 36472599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 18635706 - 18635664
Alignment:
Q  176 gagaaaaattaatctaacaactaattactaacatttgtcatta 218  Q
    |||||||| | |||||||||||||||||||||||||| |||||    
T  18635706 gagaaaaactgatctaacaactaattactaacatttgccatta 18635664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 22544618 - 22544581
Alignment:
Q  181 aaattaatctaacaactaattactaacatttgtcatta 218  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  22544618 aaattaatctaacaactaaatactaacatttgacatta 22544581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 28308421 - 28308384
Alignment:
Q  181 aaattaatctaacaactaattactaacatttgtcatta 218  Q
    |||||| | |||||||||||||||||||||||||||||    
T  28308421 aaattagtttaacaactaattactaacatttgtcatta 28308384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 1652535 - 1652646
Alignment:
Q  108 ttggatagctgaacaggtttgagctaagggttgaggagttggaggtacc-ggttcaaacccaagcgaaggagaaaaattaatctaacaactaattactaa 206  Q
    |||| ||||| ||| ||||||||||||||| | || | |||||||| |  |||||||||||    |||||||||||| ||||||||||||||||||| ||    
T  1652535 ttgggtagctcaactggtttgagctaagggataagaaattggaggtcctaggttcaaacccggatgaaggagaaaaactaatctaacaactaattaccaa 1652634  T
Q  207 catttgtcatta 218  Q
    |||||| |||||    
T  1652635 catttgccatta 1652646  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 5251449 - 5251412
Alignment:
Q  181 aaattaatctaacaactaattactaacatttgtcatta 218  Q
    |||||||||||||||||||||||||||||||| |||||    
T  5251449 aaattaatctaacaactaattactaacatttgacatta 5251412  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 10223433 - 10223394
Alignment:
Q  179 aaaaattaatctaacaactaattactaacatttgtcatta 218  Q
    |||||| ||| |||||||||||||||||||||||||||||    
T  10223433 aaaaatcaatttaacaactaattactaacatttgtcatta 10223394  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 7648760 - 7648722
Alignment:
Q  179 aaaaattaatctaacaactaattactaacatttgtcatt 217  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  7648760 aaaaattaatctaacaactaattattaatatttgtcatt 7648722  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 25728080 - 25728114
Alignment:
Q  183 attaatctaacaactaattactaacatttgtcatt 217  Q
    |||||||||||||||||| ||||||||||||||||    
T  25728080 attaatctaacaactaatcactaacatttgtcatt 25728114  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 41508234 - 41508140
Alignment:
Q  125 tttgagctaagggttgaggagttggaggtaccg-gttcaaacccaagcgaaggagaaaa-attaatctaacaactaattactaacatttgtcatt 217  Q
    ||||||||||||| | || |||| ||||| | | ||||||||||   |||||||| ||| |||||| |||||||||||| |||||||||||||||    
T  41508234 tttgagctaagggataagaagttagaggttctgagttcaaacccggacgaaggagtaaatattaatataacaactaattgctaacatttgtcatt 41508140  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 217
Target Start/End: Complemental strand, 50574840 - 50574742
Alignment:
Q  123 ggtttgagctaagggttgaggagttggaggtac-cggttcaaacccaagcgaaggag---aaaaattaatctaacaactaattactaacatttgtcatt 217  Q
    ||||||||||||||| | ||||||||||||| |  |||| |||||| |  |||||||   ||||| |||||||||||||||||||||||||||| ||||    
T  50574840 ggtttgagctaagggataaggagttggaggtcctgggttgaaacccgaatgaaggagaaaaaaaactaatctaacaactaattactaacatttgccatt 50574742  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 218
Target Start/End: Complemental strand, 48308124 - 48308089
Alignment:
Q  183 attaatctaacaactaattactaacatttgtcatta 218  Q
    ||||||||||||||||| ||||||||||||||||||    
T  48308124 attaatctaacaactaactactaacatttgtcatta 48308089  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 40111767 - 40111801
Alignment:
Q  184 ttaatctaacaactaattactaacatttgtcatta 218  Q
    |||||||||||||||||||||||||||||| ||||    
T  40111767 ttaatctaacaactaattactaacatttgttatta 40111801  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 54913718 - 54913673
Alignment:
Q  169 agcgaaggagaaaaat--taatctaacaactaattactaacatttg 212  Q
    ||||||||||||||||  ||||||||||||||| ||||||||||||    
T  54913718 agcgaaggagaaaaatactaatctaacaactaactactaacatttg 54913673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 10428054 - 10428021
Alignment:
Q  184 ttaatctaacaactaattactaacatttgtcatt 217  Q
    |||||||||||||||||||| |||||||||||||    
T  10428054 ttaatctaacaactaattacgaacatttgtcatt 10428021  T

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Target: scaffold0179 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 31053 - 31014
Alignment:
Q  179 aaaaattaatctaacaactaattactaacatttgtcatta 218  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  31053 aaaaattaatctaacaactaattaataatatttgtcatta 31014  T

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Target: scaffold0071 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 63452 - 63486
Alignment:
Q  183 attaatctaacaactaattactaacatttgtcatt 217  Q
    |||||||||||||||||||| ||||||||||||||    
T  63452 attaatctaacaactaattaataacatttgtcatt 63486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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