View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2786-Insertion-16 (Length: 85)
Name: NF2786-Insertion-16
Description: NF2786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2786-Insertion-16 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] scaffold0119 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 70; Significance: 3e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-32
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 26672071 - 26672148
Alignment:
| Q |
8 |
agcacataggcaactgttttcacctacatctgatgctatgcaatacgtttgaaatgtaccattttcaaaccaggtagc |
85 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
26672071 |
agcacataggcaactgttttcacctacatctgatgctatgcaatacggttgaaatgtaccatcttcaaaccaggtagc |
26672148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-32
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 26674599 - 26674676
Alignment:
| Q |
8 |
agcacataggcaactgttttcacctacatctgatgctatgcaatacgtttgaaatgtaccattttcaaaccaggtagc |
85 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
26674599 |
agcacataggcaactgttttcacctacatctgatgctatgcaatacggttgaaatgtaccatcttcaaaccaggtagc |
26674676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 3e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-32
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 1301413 - 1301490
Alignment:
| Q |
8 |
agcacataggcaactgttttcacctacatctgatgctatgcaatacgtttgaaatgtaccattttcaaaccaggtagc |
85 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
1301413 |
agcacataggcaactgttttcacctacatctgatgctatgcaatacggttgaaatgtaccatcttcaaaccaggtagc |
1301490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 1291462 - 1291391
Alignment:
| Q |
14 |
taggcaactgttttcacctacatctgatgctatgcaatacgtttgaaatgtaccattttcaaaccaggtagc |
85 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
1291462 |
taggcaactgttttcacctacatctgatgctatgcaatacggttgaaatgtaccatattcaaaccaggtagc |
1291391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119 (Bit Score: 68; Significance: 5e-31; HSPs: 1)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 68; E-Value: 5e-31
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 20797 - 20872
Alignment:
| Q |
8 |
agcacataggcaactgttttcacctacatctgatgctatgcaatacgtttgaaatgtaccattttcaaaccaggta |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
20797 |
agcacataggcaactgttttcacctacatctgatgctatgcaatacggttgaaatgtaccatcttcaaaccaggta |
20872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University