View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2786-Insertion-17 (Length: 69)

Name: NF2786-Insertion-17
Description: NF2786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2786-Insertion-17
NF2786-Insertion-17
[»] chr6 (10 HSPs)
chr6 (8-59)||(13942669-13942720)
chr6 (8-69)||(14086109-14086170)
chr6 (22-69)||(13861403-13861450)
chr6 (8-62)||(14026643-14026697)
chr6 (22-62)||(13942513-13942553)
chr6 (20-59)||(13471418-13471457)
chr6 (8-59)||(14016685-14016736)
chr6 (8-59)||(14086272-14086323)
chr6 (8-62)||(14016529-14016583)
chr6 (10-61)||(13873864-13873915)


Alignment Details
Target: chr6 (Bit Score: 40; Significance: 0.00000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 13942720 - 13942669
Alignment:
Q  8 gatattccaatgggtgtcaaacataagttccaacattgttgagcttgacctt 59  Q
    |||||||||||||||||||||||||||||| ||  |||||||||||||||||    
T  13942720 gatattccaatgggtgtcaaacataagttctaatcttgttgagcttgacctt 13942669  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 14086170 - 14086109
Alignment:
Q  8 gatattccaatgggtgtcaaacataagttccaacattgttgagcttgacctttcttttaacc 69  Q
    ||||||||||| |||||||||||||||||||||  ||||| |||||||| |||| |||||||    
T  14086170 gatattccaattggtgtcaaacataagttccaatcttgttaagcttgacatttcatttaacc 14086109  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 13861403 - 13861450
Alignment:
Q  22 tgtcaaacataagttccaacattgttgagcttgacctttcttttaacc 69  Q
    |||||||||||||||||||  |||||||||||||||||||||| ||||    
T  13861403 tgtcaaacataagttccaatcttgttgagcttgacctttctttcaacc 13861450  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 14026697 - 14026643
Alignment:
Q  8 gatattccaatgggtgtcaaacataagttccaacattgttgagcttgacctttct 62  Q
    ||||||||| |||||||||||||||||||||||  ||||  ||||||||||||||    
T  14026697 gatattccattgggtgtcaaacataagttccaatcttgtaaagcttgacctttct 14026643  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 13942553 - 13942513
Alignment:
Q  22 tgtcaaacataagttccaacattgttgagcttgacctttct 62  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  13942553 tgtcaaacataagttccaatcttgttgagcttgacctttct 13942513  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 13471418 - 13471457
Alignment:
Q  20 ggtgtcaaacataagttccaacattgttgagcttgacctt 59  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  13471418 ggtgtcaaacataagttccaatcttgttgagcttgacctt 13471457  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 14016736 - 14016685
Alignment:
Q  8 gatattccaatgggtgtcaaacataagttccaacattgttgagcttgacctt 59  Q
    ||||||||| |||||||||||||||||| | ||  |||||||||||||||||    
T  14016736 gatattccattgggtgtcaaacataagtgctaatcttgttgagcttgacctt 14016685  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 14086323 - 14086272
Alignment:
Q  8 gatattccaatgggtgtcaaacataagttccaacattgttgagcttgacctt 59  Q
    ||||||||| |||||||||||||||||||||||  |||||  ||||||||||    
T  14086323 gatattccagtgggtgtcaaacataagttccaatcttgttttgcttgacctt 14086272  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 14016583 - 14016529
Alignment:
Q  8 gatattccaatgggtgtcaaacataagttccaacattgttgagcttgacctttct 62  Q
    |||||| || |||||||||||||| ||||||||  || |||||||||||||||||    
T  14016583 gatatttcagtgggtgtcaaacatgagttccaatcttattgagcttgacctttct 14016529  T

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Target: chr6; HSP #10
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 13873864 - 13873915
Alignment:
Q  10 tattccaatgggtgtcaaacataagttccaacattgttgagcttgacctttc 61  Q
    ||||||| ||| | |||||||||||||||||  ||||| |||||||||||||    
T  13873864 tattccagtggctttcaaacataagttccaatcttgttaagcttgacctttc 13873915  T

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