View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2786-Insertion-2 (Length: 728)
Name: NF2786-Insertion-2
Description: NF2786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2786-Insertion-2 |
 | |
|
| [»] scaffold1408 (3 HSPs) |
| | |
|
| [»] scaffold0428 (4 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 628; Significance: 0; HSPs: 31)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 8 - 675
Target Start/End: Original strand, 33644679 - 33645346
Alignment:
| Q |
8 |
gataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33644679 |
gataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggttattcaatacaaatagacgaatctcctattatgc |
33644778 |
T |
|
| Q |
108 |
atgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcaccacgtcgtaggcgggttccatcgtcgaccattgtggaactagt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33644779 |
atgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcaccacgtcgtaggcgggttccatcgtcgaccattatggaactagt |
33644878 |
T |
|
| Q |
208 |
tttacctaagaattcctatatgaatttttggaaaataagtgttccagtaattctcgatggtggtcttattacgaccaaatcaagtcacctatggataatc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33644879 |
tttacctaagaattcctatatgaatttttggagaataagtgttccagtaattctcgatggtggtcttattacgaccaaatcaagtcacctatggataatc |
33644978 |
T |
|
| Q |
308 |
tacttccctcgagattcctataatgaatttggaaaaatccattttgacatttttgagggggaaggtttgggtatgaaggtgaagagttgtgggtatcgct |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
33644979 |
tacttccctcgagattcctataatgaatttggaagaatctattttgacatttttgagagggaaggtctgggtatgaaggtgaagagttgtgggtatcgtt |
33645078 |
T |
|
| Q |
408 |
gggtatgtaaacaagacctacaatagttcaacttaacaatgatgaaccacaaaaatatccttagctccgaagtgtaaggtttgggtatgaagatgaggca |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33645079 |
gggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctccgaagtgtaaggtttgggtatgaagatgaggca |
33645178 |
T |
|
| Q |
508 |
gaaccacaaccgcagccataaccacttcacagataagaaggtaatgaagagtctcaacaaattgaacaagaatcatctatctgttgccacctactcattg |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33645179 |
gaaccacaaccgcagccataaccacttcacagataagaaggtaatgaagagtctcaacaaattgaacaagaatcatctatctgttgccacctactcattg |
33645278 |
T |
|
| Q |
608 |
gttgtcatcaacctgcaaaatacaaacatattttcatgggtatatgttctgcttcataccatgaagtg |
675 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33645279 |
tttgtcatcaacctgcaaaatacaaacatattttcatgggtatatgttctgcttcataccatgaagtg |
33645346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 239 - 485
Target Start/End: Complemental strand, 33387810 - 33387565
Alignment:
| Q |
239 |
aaaataagtgttccagtaattctcgatggtggtcttattacgaccaaatcaagtcacctatggataatctacttccctcgagattcctataatgaatttg |
338 |
Q |
| |
|
||||| ||||||||||| |||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||| |
|
|
| T |
33387810 |
aaaatgagtgttccagtcattctcaatggaggtcttgttacgaccaaatcaagtcacctatggataatctacttcccacgagagtcctcggatgaatttg |
33387711 |
T |
|
| Q |
339 |
gaaaaatccattttgacatttttgagggggaaggtttgggtatgaaggtgaagagttgtgggtatcgctgggtatgtaaacaagacctacaatagttcaa |
438 |
Q |
| |
|
|||| ||| ||||||||||||| ||||| ||| |||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||| | ||||| |
|
|
| T |
33387710 |
gaaatatctgttttgacatttttaaggggcaagctttgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaa |
33387611 |
T |
|
| Q |
439 |
cttaacaatgatgaaccacaaaaatatccttagctccgaagtgtaag |
485 |
Q |
| |
|
|||| ||||||| || ||| ||||| ||||| ||||||||||||||| |
|
|
| T |
33387610 |
cttaccaatgataaatcacgaaaat-tccttggctccgaagtgtaag |
33387565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 254 - 453
Target Start/End: Complemental strand, 33304119 - 33303920
Alignment:
| Q |
254 |
gtaattctcgatggtggtcttattacgaccaaatcaagtcacctatggataatctacttccctcgagattcctataatgaatttggaaaaatccattttg |
353 |
Q |
| |
|
||||||||| |||| |||||| ||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| ||||||||||||| |
|
|
| T |
33304119 |
gtaattctcaatggaggtcttgttatgaccaaatcaagtcacctatggataatctacttcccccgagagtcctatagtgaatttgaaaaaatccatttta |
33304020 |
T |
|
| Q |
354 |
acatttttgagggggaaggtttgggtatgaaggtgaagagttgtgggtatcgctgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaa |
453 |
Q |
| |
|
| ||||||||||| |||| ||| || || ||||||||||||| |||||||| |||||||||||| ||||||| ||| | |||||||||||||||||||| |
|
|
| T |
33304019 |
atatttttgagggtgaagattttagtttggaggtgaagagttgcgggtatcggtgggtatgtaaagaagacctgcaagaattcaacttaacaatgatgaa |
33303920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 271 - 485
Target Start/End: Complemental strand, 33285215 - 33285002
Alignment:
| Q |
271 |
tcttattacgaccaaatcaagtcacctatggataatctacttccctcgagattcctataatgaatttggaaaaatccattttgacatttttgagggggaa |
370 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| || || |||| |||||| || |||||| ||||||| || | ||||| ||| ||| ||| |
|
|
| T |
33285215 |
tcttattacgaccaaatcaagtcatctatggataatctacctctctagagagtcctatgataaatttgaaaaaatcagttgttacattgttgggggtgaa |
33285116 |
T |
|
| Q |
371 |
ggtttgggtatgaaggtgaagagttgtgggtatcgctgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaaccacaaaaatatcctta |
470 |
Q |
| |
|
| |||||||||| ||||||| |||||||| ||||| |||||||||||||||||||||||| ||||||| |||||||||||||| ||| ||||||||||| |
|
|
| T |
33285115 |
gatttgggtatggaggtgaacagttgtggatatcgttgggtatgtaaacaagacctacaagagttcaatttaacaatgatgaatcac-aaaatatccttg |
33285017 |
T |
|
| Q |
471 |
gctccgaagtgtaag |
485 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
33285016 |
gctccgaagtgtaag |
33285002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 280 - 449
Target Start/End: Complemental strand, 9166358 - 9166189
Alignment:
| Q |
280 |
gaccaaatcaagtcacctatggataatctacttccctcgagattcctataatgaatttggaaaaatccattttgacatttttgagggggaaggtttgggt |
379 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||| ||||| ||||| ||||||||||||||||||||||||||||| || ||| |||||||||| | |
|
|
| T |
9166358 |
gaccaaatccagtcacctatggataatctacctcccccgagagtcctacgatgaatttggaaaaatccattttgacattattcggggtgaaggtttggat |
9166259 |
T |
|
| Q |
380 |
atgaaggtgaagagttgtgggtatcgctgggtatgtaaacaagacctacaatagttcaacttaacaatga |
449 |
Q |
| |
|
||||||||||||| |||||| || || |||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
9166258 |
atgaaggtgaagacttgtggataccgttgggtatgtaaacaagacctacaagagttcaacttaacgatga |
9166189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 33304345 - 33304196
Alignment:
| Q |
16 |
tcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaat |
115 |
Q |
| |
|
||||||||| |||||||||| ||||||||||| ||||||||||||| | || |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33304345 |
tcaaattgttactccaggaaatgaaataccaatttggatcaacaataagagcgtgggtgattcaatacaaatagaccgatctcctattatgcatgacaat |
33304246 |
T |
|
| Q |
116 |
aacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
165 |
Q |
| |
|
|||||| |||||||||| ||| |||||||||| |||||| |||||||||| |
|
|
| T |
33304245 |
aacaattatatcattggctttctatgttgtgcggtattttccatggcacc |
33304196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 33388015 - 33387870
Alignment:
| Q |
16 |
tcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaat |
115 |
Q |
| |
|
||||||||| ||| |||||||||||||||| ||||||||||||||||| || ||||||||||||||| ||||||| ||| |||||||||||||||||| |
|
|
| T |
33388015 |
tcaaattgttactacaggaagtgaaataccgagttggatcaacaatcagagcatgggtgattcaatactaatagacaaattgcctattatgcatgacaat |
33387916 |
T |
|
| Q |
116 |
aacaataatatcattggatttgtatgttgtgcagtatttaccatgg |
161 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||| |||| |
|
|
| T |
33387915 |
aacaataatatcattggctttctatgttgtgcagtatttacaatgg |
33387870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 28870320 - 28870446
Alignment:
| Q |
20 |
attgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataaca |
119 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||| || |||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28870320 |
attgttactccaggaagtgaaataccaagttggattaacaatcagagcatgggtggttcaatacaaatagacgaatctcctattataaatgacaataaca |
28870419 |
T |
|
| Q |
120 |
ataatatcattggatttgtatgttgtg |
146 |
Q |
| |
|
||||||||||||| ||||||||||||| |
|
|
| T |
28870420 |
ataatatcattggctttgtatgttgtg |
28870446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 9166630 - 9166473
Alignment:
| Q |
8 |
gataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgc |
107 |
Q |
| |
|
||||||| ||||||||| || ||||||| |||||||||||||||||||||||||| || |||| || ||| |||| ||||||| | |||||||||||| |
|
|
| T |
9166630 |
gataggattcaaattgttacgccaggaattgaaataccaagttggatcaacaatcggagcgtggatggttcgataccaatagacctaactcctattatgc |
9166531 |
T |
|
| Q |
108 |
atgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
165 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
9166530 |
atgacaataacaataatatcattggctttgtatgttgtgcagtattctccatggcacc |
9166473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 33285451 - 33285306
Alignment:
| Q |
20 |
attgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataaca |
119 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| || ||||| || |||||| |||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
33285451 |
attgttactccaggaagtgaaataccaagttggattaataatcagagcgtgggtagttcaataccaatagacagatctcctattatgcatgacaataaca |
33285352 |
T |
|
| Q |
120 |
ataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
165 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||| || ||||||| |
|
|
| T |
33285351 |
ataatatcattggctttgtatgttgtgcagtgttttccgtggcacc |
33285306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 33057427 - 33057290
Alignment:
| Q |
28 |
tccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatc |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||||| ||||||||||| |||||||||| ||||||||||| |
|
|
| T |
33057427 |
tccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaatagcaatagaccgatctcctattaggcatgacaatgacaataatatc |
33057328 |
T |
|
| Q |
128 |
attggatttgtatgttgtgcagtatttaccatggcacc |
165 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
33057327 |
attggtattgtatgttgtgcagcatttacgatggcacc |
33057290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 33262487 - 33262338
Alignment:
| Q |
16 |
tcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaat |
115 |
Q |
| |
|
||||||||| | |||||||| ||||||||||||||||||||||||||| || ||||||||||||||| | ||||| || |||||||||||||||| ||| |
|
|
| T |
33262487 |
tcaaattgttagtccaggaaatgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtagaccaaactcctattatgcatgataat |
33262388 |
T |
|
| Q |
116 |
aacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
165 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| |||||| ||||| |||| |
|
|
| T |
33262387 |
aacaataatatcattggctttctatgttgtgttgtattttccatgacacc |
33262338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 33409839 - 33409690
Alignment:
| Q |
16 |
tcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||| ||| || ||||||||| |||| |||||||| |
|
|
| T |
33409839 |
tcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcagagcgtgggtgcttcaatatcaattgatgaatctcctgttataaatgacaat |
33409740 |
T |
|
| Q |
116 |
aacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
165 |
Q |
| |
|
||||||||||| ||||| |||||| |||||| | || || |||||||||| |
|
|
| T |
33409739 |
aacaataatattattggctttgtaagttgtgtattaatttccatggcacc |
33409690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 15 - 161
Target Start/End: Complemental strand, 33398934 - 33398788
Alignment:
| Q |
15 |
ctcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaa |
114 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||| || |
|
|
| T |
33398934 |
ctcaaattgttattccaggaagtgaaataccaagttggatcaacaatcagtgtgtgggtgattcaatacaaatagacctatctcctgctatgcatgataa |
33398835 |
T |
|
| Q |
115 |
taacaataatatcattggatttgtatgttgtgcagtatttaccatgg |
161 |
Q |
| |
|
||||||| | | | | |||||||||||||||||||||||||||| |
|
|
| T |
33398834 |
taacaatcagagccattactttgtatgttgtgcagtatttaccatgg |
33398788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 94 - 314
Target Start/End: Complemental strand, 33358716 - 33358496
Alignment:
| Q |
94 |
atctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcaccacgtcgtaggcgggttccatcgtcgacc |
193 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| |||| | | | || ||||| ||| | || |
|
|
| T |
33358716 |
atctcctattaggcatgacaataacaataatgtcattggttttgtatgttgtgcagtattttccatgacacctcagcatgggtattttccaccgtggtcc |
33358617 |
T |
|
| Q |
194 |
attgtggaactagttttacctaagaattcctatatgaatttttggaaaataagtgttccagtaattctcgatggtggtcttattacgaccaaatcaagtc |
293 |
Q |
| |
|
|| ||||||| |||| ||| ||||| ||| | ||| ||||||| |||||||||||||||||| |||| |||||||||||| |||||||||||| |
|
|
| T |
33358616 |
cttatggaactgactttaactacagattccaatagtattttgaggaaaatgagtgttccagtaattctcaatggaggtcttattacgcccaaatcaagtc |
33358517 |
T |
|
| Q |
294 |
acctatggataatctacttcc |
314 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
33358516 |
acctgtggataatctacttcc |
33358496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 270 - 485
Target Start/End: Complemental strand, 33271447 - 33271233
Alignment:
| Q |
270 |
gtcttattacgaccaaatcaagtcacctatggataatctacttccctcgagattcctataatgaatttggaaaaatccattttgacatttttgaggggga |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| | ||||||||| |||||| || |||||| ||| ||| || | || | | ||| || |
|
|
| T |
33271447 |
gtcttattacgaccaaatcaagtcacctatggatgatcttcctccctcgagggtcctatgataaatttgaaaacatctgttgttacgatgtgttgggtga |
33271348 |
T |
|
| Q |
370 |
aggtttgggtatgaaggtgaagagttgtgggtatcgctgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaaccacaaaaatatcctt |
469 |
Q |
| |
|
||| ||||||||| ||||||||||||| |||||||| ||| |||||||||||||||||||| ||||||| |||||||| |||| ||| ||||| ||||| |
|
|
| T |
33271347 |
aggcttgggtatggaggtgaagagttgcgggtatcgttggatatgtaaacaagacctacaagagttcaatataacaatgctgaatcacgaaaat-tcctt |
33271249 |
T |
|
| Q |
470 |
agctccgaagtgtaag |
485 |
Q |
| |
|
||||| || |||||| |
|
|
| T |
33271248 |
ggctccaaaatgtaag |
33271233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 28 - 154
Target Start/End: Original strand, 31562983 - 31563109
Alignment:
| Q |
28 |
tccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatc |
127 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||| || ||||||||||||||| |||||| |||||| |||||||||||||| |||| ||||| |
|
|
| T |
31562983 |
tccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgatatc |
31563082 |
T |
|
| Q |
128 |
attggatttgtatgttgtgcagtattt |
154 |
Q |
| |
|
||||| ||||||||||||||||||||| |
|
|
| T |
31563083 |
attggctttgtatgttgtgcagtattt |
31563109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 254 - 480
Target Start/End: Original strand, 28870548 - 28870772
Alignment:
| Q |
254 |
gtaattctcgatggtggtcttattacgaccaaatcaagtcacctatggataatctacttccctcgagattcctataatgaatttggaaaaatccattttg |
353 |
Q |
| |
|
|||||| ||||| | | |||||||||||||||||||||||||||||| || |||||||||| ||||| | |||| ||| | ||||| |||| | | |
|
|
| T |
28870548 |
gtaattatcgatagagatcttattacgaccaaatcaagtcacctatgactagtctacttcccccgagagtactatgatgtttatggaactatccgtgtga |
28870647 |
T |
|
| Q |
354 |
acatttttgagggggaaggtttgggtatgaaggtgaagagttgtgggtatcgctgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaa |
453 |
Q |
| |
|
| || | ||| |||| | ||||| | ||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28870648 |
aaggttatatgggtgaagttgtgggttttgaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagagttcaacttaacaatgatgaa |
28870747 |
T |
|
| Q |
454 |
ccacaaaaatatccttagctccgaagt |
480 |
Q |
| |
|
||||||||| ||||| |||| ||||| |
|
|
| T |
28870748 |
-cacaaaaat-tccttggctcagaagt |
28870772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 278 - 435
Target Start/End: Original strand, 31563224 - 31563381
Alignment:
| Q |
278 |
acgaccaaatcaagtcacctatggataatctacttccctcgagattcctataatgaatttggaaaaatccattttgacatttttgagggggaaggtttgg |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || | |||||||| ||||||||||||||||||||||| || || || |
|
|
| T |
31563224 |
acgaccaaatcaagtcacctatggataatctacttccctcgagggtcacgtcatgaatttcgaaaaatccattttgacattttttcggctaaaatttcac |
31563323 |
T |
|
| Q |
378 |
gtatgaaggtgaagagttgtgggtatcgctgggtatgtaaacaagacctacaatagtt |
435 |
Q |
| |
|
||||| |||||||||||| || ||||| |||||||||||||| ||||||||| |||| |
|
|
| T |
31563324 |
ctatgagggtgaagagttgcggatatcgttgggtatgtaaacatgacctacaagagtt |
31563381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 377 - 518
Target Start/End: Complemental strand, 33262117 - 33261975
Alignment:
| Q |
377 |
ggtatgaaggtgaagagttgtgggtatcgctgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaaccacaaaaatatccttagctccg |
476 |
Q |
| |
|
|||||| ||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||| || |||| |||||| ||| || |
|
|
| T |
33262117 |
ggtatggaggtgaagagttgcgggtatcattgggtatgtaaacaagacctacaagagttcaacttaacaatgatgaatcatgaaaa-atccttggcttcg |
33262019 |
T |
|
| Q |
477 |
aagtgtaaggtttgggta--tgaagatgaggcagaaccacaacc |
518 |
Q |
| |
|
|| |||||| ||| || | |||||||||| || |||||||||| |
|
|
| T |
33262018 |
aaatgtaagattttggcaattgaagatgagacacaaccacaacc |
33261975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 375 - 481
Target Start/End: Complemental strand, 33407882 - 33407777
Alignment:
| Q |
375 |
tgggtatgaaggtgaagagttgtgggtatcgctgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaaccacaaaaatatccttagctc |
474 |
Q |
| |
|
|||||| |||||||||||| || |||||| | |||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| ||||| |||| |
|
|
| T |
33407882 |
tgggtacgaaggtgaagagctgcgggtatagttgggtatgtaaacaagacctacaaaagttcaacttaacaatgatgaatcacgaaaat-tccttggctc |
33407784 |
T |
|
| Q |
475 |
cgaagtg |
481 |
Q |
| |
|
|||||| |
|
|
| T |
33407783 |
agaagtg |
33407777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 271 - 485
Target Start/End: Complemental strand, 33409590 - 33409377
Alignment:
| Q |
271 |
tcttattacgaccaaatcaagtcacctatggataatctacttccctcgagattcctataatgaatttggaaaaatccattttgacatttt-tgaggggga |
369 |
Q |
| |
|
||||||||| ||||||||||||||||||||| || |||||||||| ||||| |||||| ||| | ||||| ||| | || || || | |||| || |
|
|
| T |
33409590 |
tcttattacaaccaaatcaagtcacctatggctagtctacttcccccgagagtcctatgatgtttatggaactctccgtgc-gaaatgttatcagggtga |
33409492 |
T |
|
| Q |
370 |
aggtttgggtatgaaggtgaagagttgtgggtatcgctgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaaccacaaaaatatcctt |
469 |
Q |
| |
|
|| | ||||| | ||||||| ||||| |||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| || ||||| ||||| |
|
|
| T |
33409491 |
agttgtgggttttgaggtgaaaagttgcgggtatcgttgggtatgtaaacaagacctacaaaagttcaacttcacaatgatgaatcatgaaaat-tcctt |
33409393 |
T |
|
| Q |
470 |
agctccgaagtgtaag |
485 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
33409392 |
ggctcagaagtgtaag |
33409377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 375 - 453
Target Start/End: Complemental strand, 33396932 - 33396854
Alignment:
| Q |
375 |
tgggtatgaaggtgaagagttgtgggtatcgctgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaa |
453 |
Q |
| |
|
|||||||| |||||||||| || ||||| | |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33396932 |
tgggtatggaggtgaagagctgcaggtatagttgggtatgtaaacaagacctacaaaagttcaacttaacaatgatgaa |
33396854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 368 - 453
Target Start/End: Complemental strand, 33398581 - 33398496
Alignment:
| Q |
368 |
gaaggtttgggtatgaaggtgaagagttgtgggtatcgctgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaa |
453 |
Q |
| |
|
|||||||||||| | ||||||||||||| |||||||| |||||||||||||||||||||| | |||| ||||| ||||||||||| |
|
|
| T |
33398581 |
gaaggtttgggttttgaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacgaaagttgaacttcacaatgatgaa |
33398496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 33271648 - 33271582
Alignment:
| Q |
24 |
taactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaataga |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||||| |||| |||||| |
|
|
| T |
33271648 |
taactccaggaagtgaaataccaagttggatcaacaatcagagcatgggtgattcgataccaataga |
33271582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 384 - 463
Target Start/End: Complemental strand, 33358423 - 33358345
Alignment:
| Q |
384 |
aggtgaagagttgtgggtatcgctgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaaccacaaaaat |
463 |
Q |
| |
|
||||||||||||||| |||||| ||||| | |||||||||||||||| |||||||||| ||||||||||| ||| ||||| |
|
|
| T |
33358423 |
aggtgaagagttgtgagtatcgttgggttt-taaacaagacctacaagagttcaacttcacaatgatgaatcacgaaaat |
33358345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 270 - 546
Target Start/End: Complemental strand, 33057188 - 33056908
Alignment:
| Q |
270 |
gtcttattacgaccaaatcaagtcacctatggataatctacttccctcgag------------attcctataatgaatttggaaaaatccattttgacat |
357 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||| || |||| |||||| | |||||||||||||||| | || | | |
|
|
| T |
33057188 |
gtcttgttacgaccaaatcaagtcacctatggattatctacttaccccgagagtaccccgggtattcctgtcatgaatttggaaaaatagaattaaaatt |
33057089 |
T |
|
| Q |
358 |
ttttgagggggaaggtttgggtatgaaggtgaagagttgtgggtatcgctgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaaccac |
457 |
Q |
| |
|
|||||||| ||||||||||| |||| ||||||| || ||||| ||||||||||||||||| ||||| | ||||| || ||| ||||| ||| |
|
|
| T |
33057088 |
ttttgaggtggaaggtttgg------aggtcgagagttgcggttatcgttgggtatgtaaacaagatatacaagaattcaattt---aatcatgaatcac |
33056998 |
T |
|
| Q |
458 |
aaaaatatccttagctccgaagtgtaaggtttgggta--tgaagatgaggcagaaccacaaccgcagccataaccacttcacagataagaa |
546 |
Q |
| |
|
|||||| |||||| |||| ||||| || ||| | | |||||||||| || ||||| ||||||| ||||||| |||||||||||||||| |
|
|
| T |
33056997 |
aaaaat-tccttaactccaaagtgcaaaattttgacaattgaagatgagacacaaccagaaccgcaaccataactacttcacagataagaa |
33056908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 632 - 674
Target Start/End: Complemental strand, 33056900 - 33056858
Alignment:
| Q |
632 |
aacatattttcatgggtatatgttctgcttcataccatgaagt |
674 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
33056900 |
aacatattttcatgggtgtatgttctgtttcataccatgaagt |
33056858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 271 - 328
Target Start/End: Complemental strand, 33398708 - 33398651
Alignment:
| Q |
271 |
tcttattacgaccaaatcaagtcacctatggataatctacttccctcgagattcctat |
328 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||| |||| |||| |||||||||||| |
|
|
| T |
33398708 |
tcttgttacgaccgaatcaagtcacctatggatagcctacatcccccgagattcctat |
33398651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 375 - 453
Target Start/End: Complemental strand, 33281234 - 33281156
Alignment:
| Q |
375 |
tgggtatgaaggtgaagagttgtgggtatcgctgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaa |
453 |
Q |
| |
|
|||||| | ||||||||||||| | | |||| || |||||||||||||||||||| |||||| |||||||| ||||| |
|
|
| T |
33281234 |
tgggtacggaggtgaagagttgcgtgcatcgttgaatatgtaaacaagacctacaagagttcagtttaacaataatgaa |
33281156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 328
Target Start/End: Complemental strand, 33262232 - 33262175
Alignment:
| Q |
271 |
tcttattacgaccaaatcaagtcacctatggataatctacttccctcgagattcctat |
328 |
Q |
| |
|
||||||||||| |||||||||||||| ||| |||||||||| || ||||| |||||| |
|
|
| T |
33262232 |
tcttattacgatgaaatcaagtcacctgtggctaatctacttaccccgagagtcctat |
33262175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 3e-50; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 281 - 462
Target Start/End: Original strand, 17441301 - 17441482
Alignment:
| Q |
281 |
accaaatcaagtcacctatggataatctacttccctcgagattcctataatgaatttggaaaaatccattttgacatttttgagggggaaggtttgggta |
380 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| | || |||||| ||| |||| || |||||| |||||| |||||||||||| ||| |||||||| |
|
|
| T |
17441301 |
accaaatcaagtcacatatggataatctacttccactgtgagtcctatcatgcatttcgagaaatccgttttgaaatttttgaggggcaagctttgggta |
17441400 |
T |
|
| Q |
381 |
tgaaggtgaagagttgtgggtatcgctgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaaccacaaaaa |
462 |
Q |
| |
|
|| ||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||| |||| |
|
|
| T |
17441401 |
tggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagagttcaacttaacaatgatgaatcacgaaaa |
17441482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 17441008 - 17441183
Alignment:
| Q |
9 |
ataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgca |
108 |
Q |
| |
|
|||||| ||| ||||| | ||||||||| |||||||||||||||||||||||| | || ||||||||||||||| ||||||| |||||||||||| ||| |
|
|
| T |
17441008 |
ataggattcatattgttagtccaggaagcgaaataccaagttggatcaacaataagagcgtgggtgattcaataagaatagaccaatctcctattaagca |
17441107 |
T |
|
| Q |
109 |
tgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcaccacgtcgtaggcgggttccatcgtcg |
190 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||||||||| |||||||||| | |||| || || ||||||||||| |
|
|
| T |
17441108 |
tg------acaataatatcattggttttgtatgttgtgcagtattttccatggcacctcatcgtgggaggtttccatcgtcg |
17441183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 407 - 453
Target Start/End: Original strand, 17446954 - 17447000
Alignment:
| Q |
407 |
tgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaa |
453 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
17446954 |
tgggtatgtaaacaagacctacaagagttcaacttaacaatgttgaa |
17447000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 94; Significance: 2e-45; HSPs: 3)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 505 - 356
Alignment:
| Q |
16 |
tcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaat |
115 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||| || |||||| |||||||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
505 |
tcaaattgttactccaggaagtgaaataccaagctggatcaacaatcagagcatgggtggttcaatactaatagacgaatctcctgttatacatgacaat |
406 |
T |
|
| Q |
116 |
aacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
165 |
Q |
| |
|
|| |||||||||||||| ||||||| ||||||||||||| ||||||||| |
|
|
| T |
405 |
aagaataatatcattggctttgtattttgtgcagtattttgcatggcacc |
356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 375 - 518
Target Start/End: Complemental strand, 146 - 2
Alignment:
| Q |
375 |
tgggtatgaaggtgaagagttgtgggtatcgctgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaaccacaaaaatatccttagctc |
474 |
Q |
| |
|
|||||||| | |||||| |||| |||||||| ||||||||||||||| || ||||| |||||||||||||||||||||| || |||| |||||| ||| |
|
|
| T |
146 |
tgggtatggatgtgaagtgttgcgggtatcgttgggtatgtaaacaaaacttacaagagttcaacttaacaatgatgaatcatgaaaa-atccttggctt |
48 |
T |
|
| Q |
475 |
cgaagtgtaaggtttgggta--tgaagatgaggcagaaccacaacc |
518 |
Q |
| |
|
|||| |||||| ||| || | |||||||||| || |||||||||| |
|
|
| T |
47 |
cgaaatgtaagattttggcaattgaagatgagacacaaccacaacc |
2 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 341
Target Start/End: Complemental strand, 256 - 186
Alignment:
| Q |
271 |
tcttattacgaccaaatcaagtcacctatggataatctacttccctcgagattcctataatgaatttggaa |
341 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || ||||||| || ||||| | |||| ||| ||||||| |
|
|
| T |
256 |
tcttattccgaccaaatcaagtcacctatggctagtctactttccccgagagtactatgatgtttttggaa |
186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 94; Significance: 2e-45; HSPs: 4)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 6251 - 6102
Alignment:
| Q |
16 |
tcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaat |
115 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||| || |||||| |||||||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
6251 |
tcaaattgttactccaggaagtgaaataccaagctggatcaacaatcagagcatgggtggttcaatactaatagacgaatctcctgttatacatgacaat |
6152 |
T |
|
| Q |
116 |
aacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
165 |
Q |
| |
|
|| |||||||||||||| ||||||| ||||||||||||| ||||||||| |
|
|
| T |
6151 |
aagaataatatcattggctttgtattttgtgcagtattttgcatggcacc |
6102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 375 - 518
Target Start/End: Complemental strand, 5892 - 5748
Alignment:
| Q |
375 |
tgggtatgaaggtgaagagttgtgggtatcgctgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaaccacaaaaatatccttagctc |
474 |
Q |
| |
|
|||||||| | |||||| |||| |||||||| ||||||||||||||| || ||||| |||||||||||||||||||||| || |||| |||||| ||| |
|
|
| T |
5892 |
tgggtatggatgtgaagtgttgcgggtatcgttgggtatgtaaacaaaacttacaagagttcaacttaacaatgatgaatcatgaaaa-atccttggctt |
5794 |
T |
|
| Q |
475 |
cgaagtgtaaggtttgggta--tgaagatgaggcagaaccacaacc |
518 |
Q |
| |
|
|||| |||||| ||| || | |||||||||| || |||||||||| |
|
|
| T |
5793 |
cgaaatgtaagattttggcaattgaagatgagacacaaccacaacc |
5748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 341
Target Start/End: Complemental strand, 6002 - 5932
Alignment:
| Q |
271 |
tcttattacgaccaaatcaagtcacctatggataatctacttccctcgagattcctataatgaatttggaa |
341 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || ||||||| || ||||| | |||| ||| ||||||| |
|
|
| T |
6002 |
tcttattccgaccaaatcaagtcacctatggctagtctactttccccgagagtactatgatgtttttggaa |
5932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 375 - 453
Target Start/End: Original strand, 13018 - 13096
Alignment:
| Q |
375 |
tgggtatgaaggtgaagagttgtgggtatcgctgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaa |
453 |
Q |
| |
|
|||||| | ||||||||||||| | | |||| || |||||||||||||||||||| |||||| |||||||| ||||| |
|
|
| T |
13018 |
tgggtacggaggtgaagagttgcgtgcatcgttgaatatgtaaacaagacctacaagagttcagtttaacaataatgaa |
13096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 6e-36; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 31499206 - 31499351
Alignment:
| Q |
20 |
attgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataaca |
119 |
Q |
| |
|
||||| |||||||||||||||||| |||||||| | || ||||| || |||||||||||||| ||||||| |||||| ||||| ||||||||||||| |
|
|
| T |
31499206 |
attgttactccaggaagtgaaatatcaagttggtttaagaatcagagcaagggtgattcaatacgaatagactcatctcccattatccatgacaataaca |
31499305 |
T |
|
| Q |
120 |
ataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
165 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| | |||||||| |
|
|
| T |
31499306 |
ataatatcattggctttgtatgttgtgcagtattttctatggcacc |
31499351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 31472701 - 31472835
Alignment:
| Q |
20 |
attgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataaca |
119 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||| | ||||||||| |||| | ||||| |||||| ||||||||||||||||||| |
|
|
| T |
31472701 |
attgttactccaggaagtgaaataccaagttggttcaacaatcagaacaagggtgattcgatacgattagactcatctcccattatgcatgacaataaca |
31472800 |
T |
|
| Q |
120 |
ataatatcattggatttgtatgttgtgcagtattt |
154 |
Q |
| |
|
||||||||||||| | | ||||||||| ||||||| |
|
|
| T |
31472801 |
ataatatcattggttgtatatgttgtgtagtattt |
31472835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 31479155 - 31479293
Alignment:
| Q |
16 |
tcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaat |
115 |
Q |
| |
|
||||||||| |||||||| |||||||| ||||||||| |||||||||| || |||| ||| ||||| |||||| ||||| |||||||| |||||| |
|
|
| T |
31479155 |
tcaaattgttactccaggtagtgaaatgccaagttggttcaacaatcagagcaagggtaatttaatacgaatagattcttctccgattatgcacgacaat |
31479254 |
T |
|
| Q |
116 |
aacaataatatcattggatttgtatgttgtgcagtattt |
154 |
Q |
| |
|
|||||||||||| |||| | ||||||||||| ||||||| |
|
|
| T |
31479255 |
aacaataatatcgttggctgtgtatgttgtgtagtattt |
31479293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 31148158 - 31148111
Alignment:
| Q |
16 |
tcaaattgtaactccaggaagtgaaataccaagttggatcaacaatca |
63 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
31148158 |
tcaaattgttactccgggaagtgaaataccaagttggttcaacaatca |
31148111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 31157082 - 31156947
Alignment:
| Q |
18 |
aaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataa |
117 |
Q |
| |
|
||||||| | ||| |||||||||||||||| |||| |||||||||| || | ||||||||||||| ||| ||| ||||| |||||| | ||||| | |
|
|
| T |
31157082 |
aaattgttattcctggaagtgaaataccaatttggttcaacaatcagagcgagggtgattcaataagaatggacctatctcagattatggacaacaatga |
31156983 |
T |
|
| Q |
118 |
caataatatcattggatttgtatgttgtgcagtatt |
153 |
Q |
| |
|
|||| || ||||||| ||| |||||||||||||| |
|
|
| T |
31156982 |
caatgatttcattggcattgcttgttgtgcagtatt |
31156947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 31504420 - 31504490
Alignment:
| Q |
102 |
ttatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcaccacgtcgt |
172 |
Q |
| |
|
||||||||||| ||| |||||||||||||| | ||||||||||| ||||||| |||||| ||| |||||| |
|
|
| T |
31504420 |
ttatgcatgactttaaaaataatatcattggttgtgtatgttgtgtagtattttccatggaacctcgtcgt |
31504490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 371 - 473
Target Start/End: Original strand, 31499551 - 31499652
Alignment:
| Q |
371 |
ggtttgggtatgaaggtgaagagttgtgggtatcgctgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaaccacaaaaatatcctta |
470 |
Q |
| |
|
||||||| ||| |||||||| | || ||||| | |||||||| ||| || || |||||| |||| ||||||||||||||||| |||| ||||| ||||| |
|
|
| T |
31499551 |
ggtttggttataaaggtgaaaattttcgggtaccactgggtatataagcatgatctacaagagttgaacttaacaatgatgaatcacagaaata-cctta |
31499649 |
T |
|
| Q |
471 |
gct |
473 |
Q |
| |
|
||| |
|
|
| T |
31499650 |
gct |
31499652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 463
Target Start/End: Original strand, 31479558 - 31479635
Alignment:
| Q |
386 |
gtgaagagttgtgggtatcgctgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaaccacaaaaat |
463 |
Q |
| |
|
||||||| ||||||||| || ||||| | |||||| || |||||| | ||||||||||||| |||||| |||| |||| |
|
|
| T |
31479558 |
gtgaagaattgtgggtaccgttgggtttataaacaggatctacaagaattcaacttaacaaagatgaatcacagaaat |
31479635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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