View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2786-Insertion-4 (Length: 604)
Name: NF2786-Insertion-4
Description: NF2786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2786-Insertion-4 |
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| [»] scaffold0929 (2 HSPs) |
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| [»] chr7 (6 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: scaffold0929 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 125 - 604
Target Start/End: Complemental strand, 578 - 99
Alignment:
| Q |
125 |
tatattaataatagatagaaaaatcaatgctcaaccataatctagaccaaatcaagagaactatatcattatataatttattttgctaacacaatatata |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
578 |
tatattaataatagatagaaaaatcaatgctcaaccataatctagaccaaatcaagagaattatatcattatataatttattttgctaacacaatatata |
479 |
T |
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| Q |
225 |
taaaactaaaacttccacaagtcttcatcccttacccttttatattcttgtcactctttctctctaaatgaagttccaagctatggaacttctctttggt |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
478 |
taaaactaaaacttccacaagtcttcatcccttacccttttatattcttgtcactctttctctctaaatgaagttccaagctatggaacttctctttggt |
379 |
T |
|
| Q |
325 |
aaaaacacaccaaaacaaatgattccaaaagtaacattactagcaatttttgcaatacttgtcttcactgtcacaccactttcctaccctttatttagaa |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
378 |
aaaaacacaccaaaacaaatgattccaaaagtaacattactagcaatttttgcaatacttgtcttcactgtcacaccactttcctaccctttatttagaa |
279 |
T |
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| Q |
425 |
atccttcatccttgaaaaacatnnnnnnnnccaatcaaccatccactgcatttgatgatttaaatgaatcaacaagtttgacttcaacttctataaaaaa |
524 |
Q |
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| T |
278 |
atccttcatccttgaaaaacattaaaaaaaccaatcaaccatccactgcatttgatgatttaaatgaatcagcaagtttgccttcaacttctataaaaaa |
179 |
T |
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| Q |
525 |
gtgtgacatttttactggtgaatgggttccaaatccaaaagcaccatattacacaaataaaacatgttgggcaatacatg |
604 |
Q |
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| T |
178 |
gtgtgacattttcacaggtgagtgggttccaaatccaaaaggaccatattacacaaataaaacatgttgggcaattcatg |
99 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 648 - 580
Alignment:
| Q |
8 |
gtcacgagataaagagatnnnnnnntctcaaattatataccatgcaggtggtaaaatcttagggataca |
76 |
Q |
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| T |
648 |
gtcacgagataaagagataaaaaaatctcaaattatataccatgcaggtggtaaaatcttagggataca |
580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 196 - 604
Target Start/End: Complemental strand, 6369070 - 6368663
Alignment:
| Q |
196 |
tataatttattttgctaacacaatatatataaaactaaaacttccacaagtcttcatcccttacccttttatattcttgtcactctttctctctaaatga |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| | ||||||| |||||| |||||||||||||||||||||| |
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| T |
6369070 |
tataatttattttgctaacacaatatatataaaactaaatat-ccacaagtcttcatcccattcccttttctattctagtcactctttctctctaaatga |
6368972 |
T |
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| Q |
296 |
agttccaagctatggaacttctctttggtaaaaacacaccaaaacaaatgattccaaaagtaacattactagcaatttttgcaatacttgtcttcactgt |
395 |
Q |
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| T |
6368971 |
agttcgaagctatggaacttctctttggtaaaaacacatcaaaacaaatgattccaaaagtaacattattagcaatttttgcaatacttgtcttcactgt |
6368872 |
T |
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| Q |
396 |
cacaccactttcctaccctttatttagaaatccttcatccttgaaaaacatnnnnnnnnccaatcaaccatccactgcatttgatgatttaaatgaatca |
495 |
Q |
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| T |
6368871 |
cacaccattttcctaccctttatttagaaatccttcatccatgaaaaacattaaacaatccaatcaaccatccactgcatttgatcttttaaatgaatca |
6368772 |
T |
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| Q |
496 |
acaagtttgacttcaacttctataaaaaagtgtgacatttttactggtgaatgggttccaaatccaaaagcaccatattacacaaataaaacatgttggg |
595 |
Q |
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| T |
6368771 |
gcaagtttgccttcaacttctacaaaaaagtgtgacatttttacaggtgaatgggttccaaatccaaaagcaccatattacacaaataaaacatgttggg |
6368672 |
T |
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| Q |
596 |
caatacatg |
604 |
Q |
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|||| |||| |
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| T |
6368671 |
caattcatg |
6368663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 196 - 604
Target Start/End: Complemental strand, 6377535 - 6377128
Alignment:
| Q |
196 |
tataatttattttgctaacacaatatatataaaactaaaacttccacaagtcttcatcccttacccttttatattcttgtcactctttctctctaaatga |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| | ||||||| |||||| |||||||||||||||||||||| |
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| T |
6377535 |
tataatttattttgctaacacaatatatataaaactaaatat-ccacaagtcttcatcccattcccttttctattctagtcactctttctctctaaatga |
6377437 |
T |
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| Q |
296 |
agttccaagctatggaacttctctttggtaaaaacacaccaaaacaaatgattccaaaagtaacattactagcaatttttgcaatacttgtcttcactgt |
395 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6377436 |
agttcgaagctatggaacttctctttggtaaaaacacatcaaaacaaatgattccaaaagtaacattattagcaatttttgcaatacttgtcttcactgt |
6377337 |
T |
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| Q |
396 |
cacaccactttcctaccctttatttagaaatccttcatccttgaaaaacatnnnnnnnnccaatcaaccatccactgcatttgatgatttaaatgaatca |
495 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
6377336 |
cacaccattttcctaccctttatttagaaatccttcatccatgaaaaacattaaacaatccaatcaaccatccactgcatttgatcttttaaatgaatca |
6377237 |
T |
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| Q |
496 |
acaagtttgacttcaacttctataaaaaagtgtgacatttttactggtgaatgggttccaaatccaaaagcaccatattacacaaataaaacatgttggg |
595 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6377236 |
gcaagtttgccttcaacttctacaaaaaagtgtgacatttttacaggtgaatgggttccaaatccaaaagcaccatattacacaaataaaacatgttggg |
6377137 |
T |
|
| Q |
596 |
caatacatg |
604 |
Q |
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|||| |||| |
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| T |
6377136 |
caattcatg |
6377128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 6369521 - 6369471
Alignment:
| Q |
33 |
tctcaaattatataccatgcaggtggtaaaatcttagggatacaataattt |
83 |
Q |
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|||| |||| |||||||||||| |||||||||| ||||||||||||||||| |
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| T |
6369521 |
tctctaattctataccatgcagatggtaaaatcctagggatacaataattt |
6369471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 6377986 - 6377936
Alignment:
| Q |
33 |
tctcaaattatataccatgcaggtggtaaaatcttagggatacaataattt |
83 |
Q |
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|||| |||| |||||||||||| |||||||||| ||||||||||||||||| |
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| T |
6377986 |
tctctaattctataccatgcagatggtaaaatcctagggatacaataattt |
6377936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 6369466 - 6369434
Alignment:
| Q |
108 |
tactctagaacctcaaatatattaataatagat |
140 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
6369466 |
tactgtagaacctcaaatatattaataatagat |
6369434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 6377931 - 6377899
Alignment:
| Q |
108 |
tactctagaacctcaaatatattaataatagat |
140 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
6377931 |
tactgtagaacctcaaatatattaataatagat |
6377899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 506 - 604
Target Start/End: Complemental strand, 6558051 - 6557953
Alignment:
| Q |
506 |
cttcaacttctataaaaaagtgtgacatttttactggtgaatgggttccaaatccaaaagcaccatattacacaaataaaacatgttgggcaatacatg |
604 |
Q |
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||||||| ||| | ||||| ||||||||||||| |||||| ||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||| |||| |
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| T |
6558051 |
cttcaacatctttgaaaaattgtgacatttttagtggtgagtgggtgccaaatccaaaaggaccatattatacaaacaaaacatgttgggcaattcatg |
6557953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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