View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2786-Insertion-6 (Length: 470)
Name: NF2786-Insertion-6
Description: NF2786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2786-Insertion-6 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 8e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 21557710 - 21557917
Alignment:
| Q |
8 |
ctataaaaatcattttatatatatgtaaaccaaaatgatgggaccacttgtgcaaacaatatcttatgtaaaaatagggtaagttttatggtttagggtt |
107 |
Q |
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| T |
21557710 |
ctataaaaatcattttatatatatgtaaaccaaaatgatgg-accacttgtgcaaacaatatcttatgtaaaaatagggtaagttttagggtttatggtt |
21557808 |
T |
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| Q |
108 |
tcatacaatacatcaaaatagtgaaactccttttaagaccctactaattgttggtttcgctatgtgacgctatcatttatgataagttgtgtgctaatat |
207 |
Q |
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| T |
21557809 |
tcgtacaatacaccaaaatggtgaaactccttttaggaccctattaattgttggtttcgctatgtgacgctatcatttatgataagttgtgtgctaatat |
21557908 |
T |
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| Q |
208 |
acttttcct |
216 |
Q |
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||||||||| |
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| T |
21557909 |
acttttcct |
21557917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 290 - 470
Target Start/End: Original strand, 21557991 - 21558167
Alignment:
| Q |
290 |
tggtgatatattaacaagaattgatagatatatatattacctgagataaccaatgcagtgaaaatgctgagtggaaaacatcaaccgacctcgccggaaa |
389 |
Q |
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| T |
21557991 |
tggtgatatattaacaagaattgatagatat----attacctgagataaccaatgcagtgaaaatgctgagtggaaaacatcaacagacctcgccggaaa |
21558086 |
T |
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| Q |
390 |
aagtctccggtagaaagatccggggacaccagccgcgaagtaagagcgggtgttattagcagcaagacactcttccatgct |
470 |
Q |
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| T |
21558087 |
aagtctccggtagaaagatccggggacaccagccgcgaagtaggagcgagtattattagcagcaagacactcttccatgct |
21558167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 401
Target Start/End: Original strand, 20855189 - 20855264
Alignment:
| Q |
326 |
ttacctgagataaccaatgcagtgaaaatgctgagtggaaaacatcaaccgacctcgccggaaaaagtctccggta |
401 |
Q |
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| T |
20855189 |
ttaccttagataaccaatgcaaacaaaacgcagagtgaaaaacatcaacagacctcgccggaaaaagcctccggta |
20855264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 326 - 398
Target Start/End: Original strand, 41002849 - 41002921
Alignment:
| Q |
326 |
ttacctgagataaccaatgcagtgaaaatgctgagtggaaaacatcaaccgacctcgccggaaaaagtctccg |
398 |
Q |
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| T |
41002849 |
ttaccttagataaccaatgcaaagaaaacgcagagtgaaaaacatcaacagacctcgccggaaaaagcctccg |
41002921 |
T |
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