View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2786-Insertion-9 (Length: 286)
Name: NF2786-Insertion-9
Description: NF2786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2786-Insertion-9 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 7 - 202
Target Start/End: Original strand, 473215 - 473410
Alignment:
| Q |
7 |
aagaaagaaataacttatgtgagaagaggaacagaaaagaatataaatgaaacaatttcgatgagagttgttgggaagtagtaaaatagttcaagggtag |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
473215 |
aagaaagaaataacttatgtgagaagaggaacagaaaagaatataaatgaaacaatttagatgagagttgttgggaattagtaaaatagttcaagggtag |
473314 |
T |
|
| Q |
107 |
aagaacaaaagctgaagcagcagtcgaaaagtatttttagaaaatggtgaaatcaaaagatgaatgagttgaaaagtctaagtacaattaccaaaa |
202 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
473315 |
aagaacaaaagctgaagcggcagtcgaaaagtatttttagaaaatggtgaaatcaaaagatgaatgagttgaaaagtctaagtacaattaccaaaa |
473410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 41521396 - 41521186
Alignment:
| Q |
7 |
aagaaagaaataacttatgtgagaagaggaacagaaaagaatataaatgaaacaatttcgatgagagttgttgggaagtagtaaaatagttcaagggtag |
106 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41521396 |
aagaaagaaataactcatgtgaggagaggaacagaaaagaatataaatgaaacaatttagatgagacttgttgggaagtagtaaaatagttcaagggtag |
41521297 |
T |
|
| Q |
107 |
aagaacaaaagctgaagcagcagtcgaaaagtatttttagaaaatggtgaaatcaaaagatgaatgagttgaaaagtctaagtacaattaccaaaagaat |
206 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41521296 |
aagaacaaaagctg--------------aagtatttttagaaaatggtgaaatcaaaagatgaatgagttgaaaagtctaagtacaattaccaaaagaat |
41521211 |
T |
|
| Q |
207 |
tttctattaaatacttttcatatcg |
231 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
41521210 |
tttctattaaatacttttcatatcg |
41521186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 1242657 - 1242869
Alignment:
| Q |
7 |
aagaaagaaataacttatgtgagaagaggaacagaaaagaatataaatgaaacaatttcgatgagagttgttgggaagtagtaaaatagttcaagggtag |
106 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||| ||| | | ||||||| |||||||||||||||||||| | ||||| |
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| T |
1242657 |
aagaaagaaataacttatgtgagaacaggaacggaaaagaatataaaagaa----tatagatgagacttgttgggaagtagtaaaatgg------ggtag |
1242746 |
T |
|
| Q |
107 |
aagaacaaaagctgaagcagcagtcgaaaagtatttttagaaaatggtgaaatcaaaaga-tgaatgagttgaaaagtctaagtacaattaccaaaagaa |
205 |
Q |
| |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
1242747 |
aagaacaaaagctgaagcggtggtcgaaaagtatttttagaaaatggtgaaattaaaaaaatgaatgagttgaaaagtctaagtacaattaccaaaagaa |
1242846 |
T |
|
| Q |
206 |
ttttctattaaatacttttcata |
228 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
1242847 |
ttttctattaaatacttttcata |
1242869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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