View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2786R-Insertion-1 (Length: 992)
Name: NF2786R-Insertion-1
Description: NF2786R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2786R-Insertion-1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 776; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 776; E-Value: 0
Query Start/End: Original strand, 9 - 971
Target Start/End: Complemental strand, 44754251 - 44753280
Alignment:
| Q |
9 |
atagcttttgttgctgcagatatagtactatcttgtaaacctacatgttgtgaaatgtttgaactattgttgnnnnnnngcatgtaggtttggtatatac |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44754251 |
atagcttttgttgctgcagatatagtactatcttgtaaacctacatgttgtgaaatgtttgaactattgttgtttttttgcatgtaggtttggtatatac |
44754152 |
T |
|
| Q |
109 |
tttccattgtgttttgtctaccaaagtttaaagtgcttaggttattattgttcctattattactaaatggttgattttgagtagtagcataattgaggaa |
208 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
44754151 |
tttccattgtgttttgtctaccaaagtttaaagtgcttaggttattattgttcctattattactatatggttgattttgagtagtagcatagttgaggaa |
44754052 |
T |
|
| Q |
209 |
gctattccaatgcatgggatttgattcaggagaactaaagctaagagtggaagaagggtatcttggtagttggttattgttgttgtagcttgaattgaat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44754051 |
gctattccaatgcatgggatttgattcaggagaactaaagctaagagtggaagaagggtatcttggtagttggttattgttgttgtagcttgaattgaat |
44753952 |
T |
|
| Q |
309 |
ctaacaaagggtgatgatgttgaagaatttgatgggtttgaagtgaggtcaagagtgatagttggatgtgaatgttgagatgatagtgcagggttggata |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44753951 |
ctaacaaagggtgatgatgttgaagaatttgatgggtttgaagtgaggtcaagagtgatagttggatgtgaatgttgagatgatagtgcagggttggata |
44753852 |
T |
|
| Q |
409 |
ggtataattgatttgattttgtaccatctggaagataaaagtttaggccatgaagattattgttggtttgtgctgatggcattgaaccagagttggaggt |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44753851 |
ggtataattgatttgattttgtaccatctggtagataaaagtttaggccatgaagattattgttggtttgtgctgatggcattgaaccagagtttgaggt |
44753752 |
T |
|
| Q |
509 |
tgatgaacctgataatagcattgatgcggccgcggaagttgtggaagccattgctgttgctgaaagtggaaggctgtggttgtgcgtcccttcgtatgtt |
608 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44753751 |
tgatgaacctgataatagcatcgatgcggccgcggaagttgtggaagccattgctgttgctgaaagtggaaggctgtggttgtgtgtcccttcgtatgtt |
44753652 |
T |
|
| Q |
609 |
gtgattagaatagacatgtcctcaacacatctttgtacctgaaatttataattacat----gtggtgcattttagatatgtgaaaacattcaattaaatg |
704 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44753651 |
gtgattagaatagacatgtcctcaacacatctttgtacctgaaatttataattacatgtacgtggtgcattttagatatgtgaaaacattcaattaaatg |
44753552 |
T |
|
| Q |
705 |
tcattgtagcctcgagcacaaaatatgattggatggatatatgcgtaaattttctaggtgctaaataaatgaatagtttatattctttgtccttcttttt |
804 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44753551 |
tcattgtagcctcgagcacaaa----------------atatgcgtaaattttctaggtgctaaataaatgaatagtttatattctttgtccttcttttt |
44753468 |
T |
|
| Q |
805 |
gatgaagaatagttaagattctactttgtgtaaatgattaatttcaatttgaaacac-------------------aatgaaaatataaatgtacctgtt |
885 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
44753467 |
gatgaagaatagttaagattctactttgtgtaaatgattaatttcaa-ttgaaacacaatgacaacatgagagtgtaatgaaaatataaatgtacctgtt |
44753369 |
T |
|
| Q |
886 |
ttct-actggacatgatggtgcaactgtgcagcgatagtaagctcgagggcaagggttt-cctttgcaattttttgt-catacttcctc |
971 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| |
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|
| T |
44753368 |
ttctaactggacatgatggtgcaactgtgcagcgatagtaagctcgagggcaaggatttccctttgcaattttttgtccatacttcctc |
44753280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 645 - 690
Target Start/End: Original strand, 44758304 - 44758349
Alignment:
| Q |
645 |
acctgaaatttataattacatgtggtgcattttagatatgtgaaaa |
690 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44758304 |
acctgaaattcataattacatgtggtgcattttagatacgtgaaaa |
44758349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 688 - 738
Target Start/End: Original strand, 44758395 - 44758445
Alignment:
| Q |
688 |
aaacattcaattaaatgtcattgtagcctcgagcacaaaatatgattggat |
738 |
Q |
| |
|
|||||||||||| ||||| |||||||||| ||||||||||||| ||||||| |
|
|
| T |
44758395 |
aaacattcaattgaatgtaattgtagccttgagcacaaaatataattggat |
44758445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 645 - 690
Target Start/End: Original strand, 44760582 - 44760627
Alignment:
| Q |
645 |
acctgaaatttataattacatgtggtgcattttagatatgtgaaaa |
690 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
44760582 |
acctgaaattcataattatatgtggtgcattttagatacgtgaaaa |
44760627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 688 - 738
Target Start/End: Original strand, 44760673 - 44760723
Alignment:
| Q |
688 |
aaacattcaattaaatgtcattgtagcctcgagcacaaaatatgattggat |
738 |
Q |
| |
|
|||| ||||||| ||||| |||||||||| ||||||||||||| ||||||| |
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| T |
44760673 |
aaacgttcaattgaatgtaattgtagccttgagcacaaaatataattggat |
44760723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 507 - 653
Target Start/End: Complemental strand, 2215043 - 2214897
Alignment:
| Q |
507 |
gttgatgaacctgataatagcattgatgcggccgcggaagttgtggaagccattgctgttgctgaaagtggaaggctgtggttgtgcgtcccttcgtatg |
606 |
Q |
| |
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|||||||||||||||| | |||||| || || || ||||||||| | ||||| |||| ||||| | | |||| ||| ||||| || ||||| |||| |
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|
| T |
2215043 |
gttgatgaacctgataccatcattgaagctgcagctgaagttgtgtatgccatggctgatgctgttacttgaagagggtgattgtgtgttccttcatatg |
2214944 |
T |
|
| Q |
607 |
ttgtgattagaatagacatgtcctcaacacatctttgtacctgaaat |
653 |
Q |
| |
|
||||||||| || |||||||| ||| |||||||||| ||||||||| |
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|
| T |
2214943 |
ttgtgattaagatggacatgtcatcagcacatctttggacctgaaat |
2214897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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