View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2786R-Insertion-3 (Length: 218)
Name: NF2786R-Insertion-3
Description: NF2786R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2786R-Insertion-3 |
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| [»] chr2 (7 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 5415086 - 5415295
Alignment:
| Q |
9 |
tgttggatattgaaaatagctggtagcagaagtggtgggaacatacatgatgatatttgctggttgtgctgctgttattgtgaatcttaacaatgatcat |
108 |
Q |
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| T |
5415086 |
tgttggatattgaaaatagctggtagcagaagtggtgggaacatacatgatgatatttgcgggttgtgctgctgttattgtgaatcttaacaatgatcat |
5415185 |
T |
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| Q |
109 |
gtagtaacacttcctggaattgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatttcaaccctgctg |
208 |
Q |
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| T |
5415186 |
gtagtaacacttcctggaattgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatttcaaccctgctg |
5415285 |
T |
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| Q |
209 |
ttaccattgc |
218 |
Q |
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|||||||||| |
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| T |
5415286 |
ttaccattgc |
5415295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 29 - 218
Target Start/End: Original strand, 5388562 - 5388751
Alignment:
| Q |
29 |
tggtagcagaagtggtgggaacatacatgatgatatttgctggttgtgctgctgttattgtgaatcttaacaatgatcatgtagtaacacttcctggaat |
128 |
Q |
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| T |
5388562 |
tggtagcagaggtggtagggacgtacttcttgatatttgcagggtgtgctgctgttgtggtgaatcttgacaatgacaaagtagtaacacatcctgggat |
5388661 |
T |
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| Q |
129 |
tgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatttcaaccctgctgttaccattgc |
218 |
Q |
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| T |
5388662 |
ctcaattgtttggggcctcactgttatggttttggtttactctgttggtcacatctctggtgctcatttcaaccctgctgtcaccattgc |
5388751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 29 - 218
Target Start/End: Original strand, 5402371 - 5402560
Alignment:
| Q |
29 |
tggtagcagaagtggtgggaacatacatgatgatatttgctggttgtgctgctgttattgtgaatcttaacaatgatcatgtagtaacacttcctggaat |
128 |
Q |
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| T |
5402371 |
tggtagcagaggtggtagggacgtacttcttgatatttgcagggtgtgctgctgttgtggtgaatcttgacaatgacaaagtagtaacacatcctgggat |
5402470 |
T |
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| Q |
129 |
tgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatttcaaccctgctgttaccattgc |
218 |
Q |
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| T |
5402471 |
ctcaattgtttggggcctcactgttatggttttggtttactctgttggtcacatctctggtgctcatttcaaccctgctgtcaccattgc |
5402560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 5396660 - 5396860
Alignment:
| Q |
18 |
ttgaaaatagctggtagcagaagtggtgggaacatacatgatgatatttgctggttgtgctgctgttattgtgaatcttaacaatgatcatgtagtaaca |
117 |
Q |
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| T |
5396660 |
ttgaatatagttggtagcagaagtggtgggaacattcttcttgatatttgctggatgtgctgctgtggtggtgaaccttaacaatgataaagttgtgaca |
5396759 |
T |
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| Q |
118 |
cttcctggaattgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatttcaaccctgctgttaccattg |
217 |
Q |
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| T |
5396760 |
cttcctggaatatcaattgtttggggacttgctgttatggtattagtctattctataggtcatatctctggtgctcatttcaatcccgctgtcaccattg |
5396859 |
T |
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| Q |
218 |
c |
218 |
Q |
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| T |
5396860 |
c |
5396860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 24 - 218
Target Start/End: Complemental strand, 5408112 - 5407918
Alignment:
| Q |
24 |
atagctggtagcagaagtggtgggaacatacatgatgatatttgctggttgtgctgctgttattgtgaatcttaacaatgatcatgtagtaacacttcct |
123 |
Q |
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|||| ||||||||||||||||| |||||| | | ||||||||||||| |||| | |||| | ||||| |||||||||||| | || || ||||||||| |
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| T |
5408112 |
atagttggtagcagaagtggtgcgaacattcttcttgatatttgctggatgtggttctgtggtggtgaaccttaacaatgataaagttgtgacacttcct |
5408013 |
T |
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| Q |
124 |
ggaattgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatttcaaccctgctgttaccattgc |
218 |
Q |
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| T |
5408012 |
ggaattgcaattgtttggggacttgttgttatggtattagtctattctataggtcatatctctggtgcccatttcaatcccgcggtcaccattgc |
5407918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 189
Target Start/End: Original strand, 5398805 - 5398834
Alignment:
| Q |
160 |
ttgatttactctgttggtcacatttctggt |
189 |
Q |
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| T |
5398805 |
ttgatttactctgttggtcacatttctggt |
5398834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 5398750 - 5398798
Alignment:
| Q |
96 |
taacaatgatcatgtagtaacacttcctggaattgcatttgcttgggga |
144 |
Q |
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| T |
5398750 |
taacaatgatcgtgtagtgacacttcttggaattgcatttacatgggga |
5398798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 97 - 218
Target Start/End: Original strand, 36267625 - 36267746
Alignment:
| Q |
97 |
aacaatgatcatgtagtaacacttcctggaattgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatt |
196 |
Q |
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|||||||| |||| |||||||||||||||||| || ||| ||||||| | |||| ||||| || |||||||| |||||||||| ||||||||||||| |
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| T |
36267625 |
aacaatgaaaatgttgtaacacttcctggaatttcaattgtttggggacttgctgtgatggtgctggtttactctcttggtcacatctctggtgctcatt |
36267724 |
T |
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| Q |
197 |
tcaaccctgctgttaccattgc |
218 |
Q |
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| T |
36267725 |
tcaatcctgcagttaccattgc |
36267746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 109 - 218
Target Start/End: Original strand, 36262476 - 36262585
Alignment:
| Q |
109 |
gtagtaacacttcctggaattgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatttcaaccctgctg |
208 |
Q |
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|||||||||||||| || |||||| ||| ||||||| | ||| | |||| |||||||||||| ||||||| || ||||||||||||||||| ||||||| |
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| T |
36262476 |
gtagtaacacttccagggattgcaattgtttggggactaactttgttggtattgatttactctcttggtcatatctctggtgctcatttcaatcctgctg |
36262575 |
T |
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| Q |
209 |
ttaccattgc |
218 |
Q |
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|||| ||||| |
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| T |
36262576 |
ttactattgc |
36262585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 34019174 - 34019224
Alignment:
| Q |
165 |
ttactctgttggtcacatttctggtgctcatttcaaccctgctgttaccat |
215 |
Q |
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||||||||||||||| || ||||| | ||||||||||||||||||||||| |
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| T |
34019174 |
ttactctgttggtcatatctctggaggacatttcaaccctgctgttaccat |
34019224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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