View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2786_high_1 (Length: 1049)

Name: NF2786_high_1
Description: NF2786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2786_high_1
NF2786_high_1
[»] chr5 (14 HSPs)
chr5 (5-766)||(38816178-38816932)
chr5 (427-576)||(38821782-38821928)
chr5 (140-215)||(19820428-19820503)
chr5 (166-295)||(22423764-22423895)
chr5 (140-207)||(22013364-22013431)
chr5 (140-214)||(42469171-42469245)
chr5 (162-214)||(6326332-6326384)
chr5 (248-297)||(8420075-8420124)
chr5 (165-214)||(15410483-15410532)
chr5 (243-295)||(9929668-9929720)
chr5 (155-213)||(15382442-15382500)
chr5 (267-297)||(24906250-24906280)
chr5 (318-356)||(35665559-35665597)
chr5 (179-212)||(6035472-6035505)
[»] chr3 (18 HSPs)
chr3 (820-1049)||(34899746-34899975)
chr3 (140-215)||(8383207-8383282)
chr3 (153-252)||(5441029-5441128)
chr3 (176-265)||(8039818-8039908)
chr3 (155-214)||(24205076-24205135)
chr3 (141-215)||(8587055-8587129)
chr3 (140-206)||(8842280-8842346)
chr3 (171-236)||(5407261-5407325)
chr3 (155-215)||(28917966-28918026)
chr3 (155-214)||(4991002-4991061)
chr3 (149-208)||(10335327-10335386)
chr3 (140-263)||(25064859-25064981)
chr3 (140-215)||(55401025-55401100)
chr3 (259-297)||(4466538-4466576)
chr3 (267-297)||(5440965-5440995)
chr3 (164-214)||(9800014-9800064)
chr3 (259-297)||(13807237-13807275)
chr3 (141-215)||(32429414-32429488)
[»] chr7 (23 HSPs)
chr7 (140-214)||(27944991-27945065)
chr7 (140-214)||(24105629-24105702)
chr7 (183-265)||(29787354-29787435)
chr7 (162-215)||(11722132-11722185)
chr7 (153-263)||(24339605-24339716)
chr7 (165-246)||(19206025-19206107)
chr7 (179-263)||(32308109-32308194)
chr7 (185-295)||(11700798-11700909)
chr7 (155-215)||(1433419-1433479)
chr7 (135-295)||(7328639-7328805)
chr7 (140-211)||(2034392-2034462)
chr7 (164-215)||(2425767-2425818)
chr7 (172-215)||(21828439-21828482)
chr7 (140-215)||(43027503-43027578)
chr7 (155-214)||(43249958-43250017)
chr7 (173-215)||(8046061-8046103)
chr7 (179-246)||(22484014-22484082)
chr7 (173-215)||(23191879-23191921)
chr7 (165-215)||(26733279-26733329)
chr7 (184-258)||(30731031-30731104)
chr7 (182-255)||(11072290-11072362)
chr7 (267-296)||(17852091-17852120)
chr7 (164-213)||(49107795-49107844)
[»] chr6 (25 HSPs)
chr6 (162-263)||(10294079-10294181)
chr6 (155-215)||(9027143-9027203)
chr6 (140-215)||(853893-853968)
chr6 (155-263)||(16766662-16766771)
chr6 (155-215)||(5000660-5000720)
chr6 (155-295)||(5732474-5732604)
chr6 (140-208)||(8365560-8365628)
chr6 (142-214)||(12696277-12696348)
chr6 (155-263)||(9107355-9107464)
chr6 (164-215)||(9629357-9629408)
chr6 (140-215)||(30866178-30866253)
chr6 (140-214)||(6389693-6389767)
chr6 (165-215)||(9658854-9658904)
chr6 (177-215)||(19040339-19040377)
chr6 (140-208)||(3398569-3398637)
chr6 (155-215)||(7938081-7938141)
chr6 (166-214)||(13851712-13851760)
chr6 (248-295)||(426478-426525)
chr6 (155-214)||(7977865-7977924)
chr6 (172-215)||(20371144-20371187)
chr6 (267-297)||(34073276-34073306)
chr6 (155-258)||(34073337-34073441)
chr6 (162-215)||(426548-426601)
chr6 (254-295)||(2117134-2117175)
chr6 (174-215)||(7265627-7265668)
[»] chr8 (10 HSPs)
chr8 (162-263)||(22651948-22652050)
chr8 (157-263)||(29510289-29510396)
chr8 (140-208)||(25192388-25192456)
chr8 (149-215)||(926822-926888)
chr8 (162-215)||(27213519-27213572)
chr8 (140-208)||(126390-126457)
chr8 (140-215)||(13436998-13437073)
chr8 (172-215)||(31109552-31109595)
chr8 (153-215)||(24362236-24362298)
chr8 (182-215)||(39954313-39954346)
[»] chr2 (17 HSPs)
chr2 (140-251)||(21782817-21782927)
chr2 (140-204)||(33519736-33519800)
chr2 (140-215)||(20539708-20539783)
chr2 (155-246)||(4332891-4332981)
chr2 (165-215)||(21616737-21616787)
chr2 (140-213)||(19536434-19536507)
chr2 (139-212)||(23717976-23718048)
chr2 (139-212)||(24105648-24105720)
chr2 (248-295)||(19536361-19536408)
chr2 (248-295)||(19574031-19574078)
chr2 (188-246)||(1327976-1328033)
chr2 (248-294)||(18255945-18255991)
chr2 (248-294)||(34691770-34691816)
chr2 (248-294)||(34714182-34714228)
chr2 (165-263)||(36409614-36409711)
chr2 (155-240)||(18276486-18276570)
chr2 (141-206)||(21624217-21624282)
[»] scaffold0306 (1 HSPs)
scaffold0306 (139-215)||(13349-13425)
[»] scaffold0223 (1 HSPs)
scaffold0223 (140-295)||(20122-20279)
[»] scaffold0152 (1 HSPs)
scaffold0152 (139-215)||(21902-21978)
[»] chr1 (17 HSPs)
chr1 (163-215)||(6427323-6427375)
chr1 (155-215)||(40917716-40917776)
chr1 (156-215)||(398799-398858)
chr1 (242-295)||(48547938-48547991)
chr1 (163-215)||(2896155-2896207)
chr1 (148-294)||(10572535-10572690)
chr1 (139-214)||(5376535-5376609)
chr1 (171-215)||(12443494-12443538)
chr1 (179-215)||(17831565-17831601)
chr1 (179-215)||(36878450-36878486)
chr1 (162-254)||(1486703-1486796)
chr1 (155-255)||(38503285-38503386)
chr1 (153-208)||(48040503-48040558)
chr1 (162-240)||(1262856-1262933)
chr1 (165-215)||(9709795-9709845)
chr1 (165-215)||(34298411-34298461)
chr1 (140-194)||(39130822-39130876)
[»] scaffold0168 (3 HSPs)
scaffold0168 (149-295)||(21002-21149)
scaffold0168 (234-295)||(21217-21278)
scaffold0168 (234-295)||(21346-21407)
[»] scaffold0053 (1 HSPs)
scaffold0053 (155-215)||(8763-8823)
[»] scaffold0007 (1 HSPs)
scaffold0007 (155-214)||(225303-225362)
[»] scaffold0003 (1 HSPs)
scaffold0003 (155-263)||(241559-241668)
[»] scaffold0004 (1 HSPs)
scaffold0004 (173-214)||(92790-92831)
[»] scaffold0044 (1 HSPs)
scaffold0044 (180-265)||(53170-53256)
[»] scaffold0018 (2 HSPs)
scaffold0018 (143-215)||(178853-178925)
scaffold0018 (173-214)||(192284-192325)
[»] chr4 (5 HSPs)
chr4 (155-215)||(23293020-23293080)
chr4 (179-214)||(35723420-35723455)
chr4 (179-213)||(17345451-17345485)
chr4 (157-214)||(847918-847975)
chr4 (162-215)||(36635296-36635349)


Alignment Details
Target: chr5 (Bit Score: 712; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 712; E-Value: 0
Query Start/End: Original strand, 5 - 766
Target Start/End: Complemental strand, 38816932 - 38816178
Alignment:
Q  5 caacagagagtcgctgcaggttaaaaatagttgggttttacaattcaattaatgtaatatggtatattgtttgtatcattgcttgaattgaagcaataat 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38816932 caacagagagtcgctgcaggttaaaaatagttgggttttacaattcaattaatgtaatatggtatattgtttgtatcattgtttgaattgaagcaataat 38816833  T
Q  105 ttgagaaaatagaataattgaacggtaaccatatactatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaat 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       |||||||||||||||||||||||||||| ||||    
T  38816832 ttgagaaaatagaataattgaacggtaaccatatactatgaagcactaatacggactccg-------cacggatactgacacgccgacaccgctaataat 38816740  T
Q  205 ttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagttatattcg 304  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38816739 ttgagaaaatcgctatatttcagtataattatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgattcatagttatattcg 38816640  T
Q  305 tgaatcgtgatagtgttggagactgacatctgttggacactggacacacctttaatatgaagtctcggtgctagatatttatgggagatatttatttgtg 404  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816639 tgaatcgtgatagtgttggagactgacatctgttggacactgcacacacctttaatatgaagtctcggtgctagatatttatgggagatatttatttgtg 38816540  T
Q  405 aagtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatgaaggaggaat 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816539 aagtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatgaaggaggaat 38816440  T
Q  505 gcttgggtgggtgagaaagggacaaatggtatgctgttgtttaggtttaattaaaccttgttcttagggttttacattttgtctagattttgcagttggc 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816439 gcttgggtgggtgagaaagggacaaatggtatgctgttgtttaggtttaattaaaccttgttcttagggttttacattttgtctagattttgcagttggc 38816340  T
Q  605 tactttttgtggttacagttggtatacatcacggccttatgtaaattaaactgactttgtctgttagagaagggtatatagttgtatgaggtttctttgg 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816339 tactttttgtggttacagttggtatacatcacggccttatgtaaattaaactgactttgtctgttagagaagggtatatagttgtatgaggtttctttgg 38816240  T
Q  705 gtaggtgagaaattgaggttcaaaggatacaatataccttttcttgcattttctttcactga 766  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816239 gtaggtgagaaattgaggttcaaaggatacaatataccttttcttgcattttctttcactga 38816178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 427 - 576
Target Start/End: Complemental strand, 38821928 - 38821782
Alignment:
Q  427 tgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaaggga 526  Q
    |||||||||| |||||||||||||||| ||||||||||||||  ||||  | ||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  38821928 tgttgtgtgtccaggtgaagatttgagcgatcttgctgtggactattcggtgtgcccatctaaagaagaaggaggaaggcttgggtgggtgagaaaggga 38821829  T
Q  527 caaatggtatgctgttgtttaggtttaattaaaccttgttcttagggttt 576  Q
    |||||||||   || ||||||| |||  ||||| ||||||||||||||||    
T  38821828 caaatggta---tgatgtttagatttgcttaaatcttgttcttagggttt 38821782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 19820503 - 19820428
Alignment:
Q  140 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    |||||||||||| |||||||| ||||||||| |||||| |||||||| |||||||||||| |||||||||||||||    
T  19820503 ctatgaagcacggatacggacaccggacacgacacggacactgacactccgacaccgctaataatttgagaaaatc 19820428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 166 - 295
Target Start/End: Complemental strand, 22423895 - 22423764
Alignment:
Q  166 acacggcacggatactgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtc-ggac 262  Q
    ||||| ||||||||||||||| | |||||  ||| ||||||||||||||| | ||| |||| ||||||  ||| ||||||||| ||||||||||| ||||    
T  22423895 acacgacacggatactgacaccctgacactactaataatttgagaaaatcac-ataattcaatataattatatatgtcggtgtcgtgtcggtgtctggac 22423797  T
Q  263 atggctaattcgaggagtgtccgtgcttcatag 295  Q
    | | ||||| |||||||||||||||||||||||    
T  22423796 acgcctaatccgaggagtgtccgtgcttcatag 22423764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 22013364 - 22013431
Alignment:
Q  140 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttg 207  Q
    |||||||||||| |||||||| ||||||||| |||||| |||||||||||||||| |||| |||||||    
T  22013364 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacacagctaataatttg 22013431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 42469171 - 42469245
Alignment:
Q  140 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaat 214  Q
    |||||||||||| | |||||| ||| ||||| |||||||| |||||||||||||| | || ||||||||||||||    
T  42469171 ctatgaagcacggacacggacaccgaacacgacacggataatgacacgccgacacggataataatttgagaaaat 42469245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 6326384 - 6326332
Alignment:
Q  162 ccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaat 214  Q
    ||||||||| |||||| ||||||||||||||| ||||| ||||||||||||||    
T  6326384 ccggacacgacacggacactgacacgccgacatcgctagtaatttgagaaaat 6326332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 8420075 - 8420124
Alignment:
Q  248 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagtt 297  Q
    |||||||||||||||  | |||||||||||||| ||||||||||||||||    
T  8420075 gtgtcggtgtcggacgcgcctaattcgaggagtatccgtgcttcatagtt 8420124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 15410532 - 15410483
Alignment:
Q  165 gacacggcacggatactgacacgccgacaccgctactaatttgagaaaat 214  Q
    |||||| |||||| ||||||||||||||||||||| |||||| |||||||    
T  15410532 gacacgacacggacactgacacgccgacaccgctaataatttaagaaaat 15410483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 9929668 - 9929720
Alignment:
Q  243 gtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 295  Q
    |||| |||||||| ||||||| | ||||||||||||||||| |||||||||||    
T  9929668 gtgtcgtgtcggtatcggacacgactaattcgaggagtgtctgtgcttcatag 9929720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 15382442 - 15382500
Alignment:
Q  155 acggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaa 213  Q
    |||||| ||||||||| |||||| | |||||||||||||| |||| |||||||| ||||    
T  15382442 acggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaa 15382500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 297
Target Start/End: Complemental strand, 24906280 - 24906250
Alignment:
Q  267 ctaattcgaggagtgtccgtgcttcatagtt 297  Q
    |||||||||||||||||||||||||||||||    
T  24906280 ctaattcgaggagtgtccgtgcttcatagtt 24906250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 356
Target Start/End: Complemental strand, 35665597 - 35665559
Alignment:
Q  318 tgttggagactgacatctgttggacactggacacacctt 356  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  35665597 tgttggaaactgacatgtgttggacactggacacacctt 35665559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 6035472 - 6035505
Alignment:
Q  179 actgacacgccgacaccgctactaatttgagaaa 212  Q
    ||||||||||||||||||||| ||||||||||||    
T  6035472 actgacacgccgacaccgctaataatttgagaaa 6035505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 230; Significance: 1e-126; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 820 - 1049
Target Start/End: Original strand, 34899746 - 34899975
Alignment:
Q  820 gtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactata 919  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899746 gtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactata 34899845  T
Q  920 aggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaa 1019  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899846 aggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaa 34899945  T
Q  1020 gtttggtagtttcaactttcaagttgagat 1049  Q
    ||||||||||||||||||||||||||||||    
T  34899946 gtttggtagtttcaactttcaagttgagat 34899975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 8383207 - 8383282
Alignment:
Q  140 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    ||||| |||||| | |||||| | ||||||| |||||| | ||||||||||||||||||| |||||||||||||||    
T  8383207 ctatgtagcacggacacggacactggacacgacacggacattgacacgccgacaccgctaataatttgagaaaatc 8383282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 252
Target Start/End: Complemental strand, 5441128 - 5441029
Alignment:
Q  153 atacggac-tccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgt 251  Q
    |||||||| |||||||||| ||| || |||||||||||| ||||||||  |||||||||||||| | ||| |||| |  |||||||||||||||| ||||    
T  5441128 atacggacatccggacacgacacagacactgacacgccgtcaccgctaaaaatttgagaaaatcac-ataattcaatggaattatgtgtcggtgttgtgt 5441030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 265
Target Start/End: Complemental strand, 8039908 - 8039818
Alignment:
Q  176 gatactgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcggacatg 265  Q
    |||| ||||||||| ||||||||| ||||||||||||||   |||| |||| | ||||  ||||||||||||| ||||||||||||||||||    
T  8039908 gatattgacacgccaacaccgctaataatttgagaaaat-tatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacatg 8039818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 24205135 - 24205076
Alignment:
Q  155 acggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaat 214  Q
    |||||| ||||||||| |||||| |||||||||||||||| | || ||||||||||||||    
T  24205135 acggacaccggacacgacacggacactgacacgccgacacggataataatttgagaaaat 24205076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 8587129 - 8587055
Alignment:
Q  141 tatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    ||||||||||  |||||||| ||||||| | |||||| ||||||||||||||||  ||| |||||||| ||||||    
T  8587129 tatgaagcacagatacggacaccggacatgacacggacactgacacgccgacacatctagtaatttgaaaaaatc 8587055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 8842280 - 8842346
Alignment:
Q  140 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaattt 206  Q
    |||||||||||| |||||||| ||||| ||| |||||| | ||||| ||||||||||||| ||||||    
T  8842280 ctatgaagcacggatacggacaccggatacgacacggaaattgacatgccgacaccgctaataattt 8842346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 5407325 - 5407261
Alignment:
Q  171 gcacggatactgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataattat 236  Q
    |||||||||| ||||||||||||||||||  |||||||||||||| | ||| |||||| |||||||    
T  5407325 gcacggataccgacacgccgacaccgctaaaaatttgagaaaatcac-ataattcattgtaattat 5407261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 28917966 - 28918026
Alignment:
Q  155 acggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    |||||| ||||||||| |||||| |||||||||||||||  |||| |||||||| ||||||    
T  28917966 acggacaccggacacgacacggaaactgacacgccgacatagctaataatttgaaaaaatc 28918026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 4991061 - 4991002
Alignment:
Q  155 acggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaat 214  Q
    |||||| ||| ||||| |||||| |||||||| |||||||||||| || |||||||||||    
T  4991061 acggacaccgaacacgacacggagactgacactccgacaccgctaatagtttgagaaaat 4991002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 10335386 - 10335327
Alignment:
Q  149 acgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttga 208  Q
    ||||| |||||| ||||||||| |||||| ||||||||||||||||  ||| ||||||||    
T  10335386 acgaacacggacaccggacacgacacggacactgacacgccgacacaactaataatttga 10335327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 263
Target Start/End: Original strand, 25064859 - 25064981
Alignment:
Q  140 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataattatgtg 239  Q
    ||||||| ||||  ||| ||| ||||||||| ||| || | ||||||||||||||||||| | |||||| |||||| | ||| || | | ||||||||||    
T  25064859 ctatgaaacacgggtacagacaccggacacgacacagacattgacacgccgacaccgctaatgatttgaaaaaatcac-ataatttagtgtaattatgtg 25064957  T
Q  240 tcggtgtggtgtcggtgtcggaca 263  Q
    | ||| | |||| |||||||||||    
T  25064958 ttggtatcgtgttggtgtcggaca 25064981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 55401025 - 55401100
Alignment:
Q  140 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    |||||||||||  |||||||| ||||| ||| |||||| ||||| ||||||||||  ||| |||||||| ||||||    
T  55401025 ctatgaagcacagatacggacaccggatacgacacggacactgatacgccgacacaactaataatttgaaaaaatc 55401100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 297
Target Start/End: Complemental strand, 4466576 - 4466538
Alignment:
Q  259 ggacatggctaattcgaggagtgtccgtgcttcatagtt 297  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  4466576 ggacacggcttattcgaggagtgtccgtgcttcatagtt 4466538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 297
Target Start/End: Complemental strand, 5440995 - 5440965
Alignment:
Q  267 ctaattcgaggagtgtccgtgcttcatagtt 297  Q
    |||||||||||||||||||||||||||||||    
T  5440995 ctaattcgaggagtgtccgtgcttcatagtt 5440965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 9800014 - 9800064
Alignment:
Q  164 ggacacggcacggatactgacacgccgacaccgctactaatttgagaaaat 214  Q
    ||||||| |||| | ||||||||||||||||| ||| ||||||||||||||    
T  9800014 ggacacgacacgtacactgacacgccgacacctctaataatttgagaaaat 9800064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 297
Target Start/End: Original strand, 13807237 - 13807275
Alignment:
Q  259 ggacatggctaattcgaggagtgtccgtgcttcatagtt 297  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  13807237 ggacatgcctaattcgaggagtgtccgtgtttcatagtt 13807275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 32429488 - 32429414
Alignment:
Q  141 tatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    ||||||||||| |||||||| ||||||||  |||| | | |||||| |||||| ||||| |||||| ||||||||    
T  32429488 tatgaagcacgtatacggacaccggacacaacacgaacattgacactccgacaacgctaataatttaagaaaatc 32429414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 1e-19; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 27944991 - 27945065
Alignment:
Q  140 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaat 214  Q
    |||||||||||| |||||||| ||||||||| |||||| ||||||||||||||||| ||| ||||||||||||||    
T  27944991 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacaccactaataatttgagaaaat 27945065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 24105629 - 24105702
Alignment:
Q  140 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaat 214  Q
    |||||||||||| ||||||| | |||||||| |||||| |||||||||||||||| |||| |||||||| |||||    
T  24105629 ctatgaagcacggatacgga-tacggacacgacacggacactgacacgccgacacagctaataatttgaaaaaat 24105702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 265
Target Start/End: Complemental strand, 29787435 - 29787354
Alignment:
Q  183 acacgccgacaccgctactaatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggacatg 265  Q
    ||||||||||||||||| ||||||||||||||| | ||| |||| | ||||||||||| |||||  ||||||||| |||||||    
T  29787435 acacgccgacaccgctaataatttgagaaaatcac-ataattcagtgtaattatgtgttggtgtaatgtcggtgttggacatg 29787354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 11722185 - 11722132
Alignment:
Q  162 ccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    ||||||||| |||||| |||||||||||||||||||||  ||||||||||||||    
T  11722185 ccggacacgacacggacactgacacgccgacaccgctaacaatttgagaaaatc 11722132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 263
Target Start/End: Original strand, 24339605 - 24339716
Alignment:
Q  153 atacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtg 250  Q
    |||||||| ||||||||| || ||| | |||||||||||||| |||| |||||||| |||||| | ||| |||| | |||||  | |||||||||| |||    
T  24339605 atacggacaccggacacgacatggacattgacacgccgacacagctaataatttgaaaaaatcac-ataattcagtgtaattacaagtgtcggtgtcgtg 24339703  T
Q  251 tcggtgtcggaca 263  Q
    |||||||||||||    
T  24339704 tcggtgtcggaca 24339716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 246
Target Start/End: Original strand, 19206025 - 19206107
Alignment:
Q  165 gacacggcacggatactgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataat--tatgtgtcggtgt 246  Q
    |||||| |||||| ||  ||||||||||||||||| ||||||||||||||| | ||| |||||||||||  |||||||||||||    
T  19206025 gacacgacacggacaccaacacgccgacaccgctaataatttgagaaaatcac-ataattcattataattatatgtgtcggtgt 19206107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 263
Target Start/End: Original strand, 32308109 - 32308194
Alignment:
Q  179 actgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcggaca 263  Q
    ||||||||||||||||||||| ||||||||||||||| | ||| |||| | ||||  |||||||| |||| |||||||||| |||||    
T  32308109 actgacacgccgacaccgctaataatttgagaaaatcac-ataattcagtgtaattgtatgtgtcagtgtcgtgtcggtgttggaca 32308194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 295
Target Start/End: Original strand, 11700798 - 11700909
Alignment:
Q  185 acgccgacaccgctactaatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcgg--acatggctaattcgaggagtgt 282  Q
    |||| ||||||| || |||||||| |||||| | ||| |||| | |||||||||||| |||| || ||||||||||  ||| ||||||| ||||||||||    
T  11700798 acgctgacaccgttaataatttgacaaaatcac-ataattcaatgtaattatgtgtctgtgttgtctcggtgtcggacacacggctaatccgaggagtgt 11700896  T
Q  283 ccgtgcttcatag 295  Q
    || || |||||||    
T  11700897 ccctgattcatag 11700909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 1433419 - 1433479
Alignment:
Q  155 acggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    |||||| ||| ||||| |||||| | |||||||||||||||| || |||||||||||||||    
T  1433419 acggacaccgaacacgacacggacattgacacgccgacaccgttaataatttgagaaaatc 1433479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 295
Target Start/End: Complemental strand, 7328805 - 7328639
Alignment:
Q  135 atatactatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataat- 233  Q
    ||||||||||||||||| |||||||| ||| ||||| ||| || | | ||||| ||| || |||| ||||||||||||||  | ||| || | | ||||     
T  7328805 atatactatgaagcacggatacggacaccgaacacgacacagacattaacacgtcgatactgctaataatttgagaaaataac-ataatttagtgtaatt 7328707  T
Q  234 -tatgtgtcggtgtggtgtc-----ggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 295  Q
     ||||||||||||| |||||     ||||||||||| | ||||| ||| |||||| ||||||||||||    
T  7328706 atatgtgtcggtgtcgtgtcgtgttggtgtcggacacgcctaatccgatgagtgttcgtgcttcatag 7328639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 2034392 - 2034462
Alignment:
Q  140 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaa 211  Q
    |||||||||||| ||||||| | | |||||| |||||||||| ||||| ||||||| ||| |||||||||||    
T  2034392 ctatgaagcacggatacgga-tactgacacgacacggatacttacacgtcgacaccactaataatttgagaa 2034462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 2425818 - 2425767
Alignment:
Q  164 ggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    ||||||| ||| ||||||||||||||| ||||| || |||||||||||||||    
T  2425818 ggacacgacacagatactgacacgccggcaccgttaataatttgagaaaatc 2425767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 21828482 - 21828439
Alignment:
Q  172 cacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    |||||| |||||||||||||||||| || |||||||||||||||    
T  21828482 cacggacactgacacgccgacaccgttagtaatttgagaaaatc 21828439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 43027578 - 43027503
Alignment:
Q  140 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    |||||||||||| || ||||| | ||||||| |||||| ||||||||| |||| | |||| |||||||| ||||||    
T  43027578 ctatgaagcacggatgcggacactggacacgacacggacactgacacggcgacccagctaataatttgaaaaaatc 43027503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 43249958 - 43250017
Alignment:
Q  155 acggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaat 214  Q
    |||||| ||||||| | |||||| |||||||||||||||| | || ||||||||||||||    
T  43249958 acggacaccggacaagacacggacactgacacgccgacacggataataatttgagaaaat 43250017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 8046103 - 8046061
Alignment:
Q  173 acggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||    
T  8046103 acggatactgacacgccaacaccactaataatttgagaaaatc 8046061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 22484014 - 22484082
Alignment:
Q  179 actgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataat--tatgtgtcggtgt 246  Q
    ||||||||||||||||||||| |||||| ||||||| || ||| |||| ||||||  |||||||||||||    
T  22484014 actgacacgccgacaccgctaataattttagaaaattgc-ataattcagtataattatatgtgtcggtgt 22484082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 215
Target Start/End: Original strand, 23191879 - 23191921
Alignment:
Q  173 acggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    ||||| ||||| ||||||||||||||| |||||||||||||||    
T  23191879 acggacactgatacgccgacaccgctaataatttgagaaaatc 23191921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 26733279 - 26733329
Alignment:
Q  165 gacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    |||||| |||||| ||||||||| ||||||||||| |||||||| ||||||    
T  26733279 gacacgacacggacactgacacgtcgacaccgctaataatttgacaaaatc 26733329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 30731031 - 30731104
Alignment:
Q  184 cacgccgacaccgctactaatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtc 258  Q
    |||||||||||||| | ||||||||||||||| | ||| |||| | ||||| ||||||||||| |||| ||||||    
T  30731031 cacgccgacaccgcgaataatttgagaaaatcac-ataattcagtgtaattgtgtgtcggtgtcgtgttggtgtc 30731104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 11072290 - 11072362
Alignment:
Q  182 gacacgccgacaccgctactaatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggt 255  Q
    ||||||||||||||| || |||||||| ||||    |||| |||| ||||||||||||||||||| ||||||||    
T  11072290 gacacgccgacaccgataataatttgaaaaaaata-tataattcaatataattatgtgtcggtgtcgtgtcggt 11072362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 296
Target Start/End: Original strand, 17852091 - 17852120
Alignment:
Q  267 ctaattcgaggagtgtccgtgcttcatagt 296  Q
    ||||||||||||||||||||||||||||||    
T  17852091 ctaattcgaggagtgtccgtgcttcatagt 17852120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 49107795 - 49107844
Alignment:
Q  164 ggacacggcacggatactgacacgccgacaccgctactaatttgagaaaa 213  Q
    ||||||| ||||||  ||||||| |||||||||||| |||||||||||||    
T  49107795 ggacacgacacggactctgacacaccgacaccgctaataatttgagaaaa 49107844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 2e-18; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 162 - 263
Target Start/End: Original strand, 10294079 - 10294181
Alignment:
Q  162 ccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcg 259  Q
    ||||||||| |||||||||||||| ||||| ||||||| |||||||||| |||||| |||||||| | ||||  ||||||||||||| |||| |||||||    
T  10294079 ccggacacgacacggatactgacatgccgataccgctaataatttgagataatcgc-atatttcaatgtaattatatgtgtcggtgtcgtgttggtgtcg 10294177  T
Q  260 gaca 263  Q
    ||||    
T  10294178 gaca 10294181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 9027143 - 9027203
Alignment:
Q  155 acggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    |||||||||||||||| |||||| ||||||||||||||||||||| |||||||||| ||||    
T  9027143 acggactccggacacgacacggacactgacacgccgacaccgctaataatttgagataatc 9027203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 853968 - 853893
Alignment:
Q  140 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    ||||||| |||| |||||||| ||||||||| ||||||| |||||||||||||||  ||| |||||||| ||||||    
T  853968 ctatgaatcacggatacggacaccggacacgacacggatgctgacacgccgacacaactaataatttgaaaaaatc 853893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 263
Target Start/End: Original strand, 16766662 - 16766771
Alignment:
Q  155 acggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtgtc 252  Q
    |||||| ||||||||| || ||| |||||||||||||||| |||| |||||||| |||||| | ||| |||| | |||||  | |||||||||| |||||    
T  16766662 acggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcac-ataattcagtgtaattacaagtgtcggtgtcgtgtc 16766760  T
Q  253 ggtgtcggaca 263  Q
    |||||||||||    
T  16766761 ggtgtcggaca 16766771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 5000720 - 5000660
Alignment:
Q  155 acggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    |||||| ||||||| | |||||||||||||||| ||||||||||| ||||| |||||||||    
T  5000720 acggacaccggacatgacacggatactgacacgtcgacaccgctaataattcgagaaaatc 5000660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 295
Target Start/End: Complemental strand, 5732604 - 5732474
Alignment:
Q  155 acggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcgg 254  Q
    |||||| | ||||||| || ||| |||||||||||||||||| || ||||||||||||||| | |||||| | | ||||||| |         |||||||    
T  5732604 acggacactggacacgacatggacactgacacgccgacaccgttaataatttgagaaaatcac-atattttagtgtaattatat---------gtgtcgg 5732515  T
Q  255 tgtcggacatggctaattcgaggagtgtccgtgcttcatag 295  Q
    ||||||||| | ||||| |||||||||||| ||||||||||    
T  5732514 tgtcggacacgcctaatccgaggagtgtccatgcttcatag 5732474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 8365628 - 8365560
Alignment:
Q  140 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttga 208  Q
    |||||||||||| |||||||| || |||||| |||||| ||||||||||||||||  ||| ||||||||    
T  8365628 ctatgaagcacggatacggacaccagacacgacacggacactgacacgccgacacaactaataatttga 8365560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 12696277 - 12696348
Alignment:
Q  142 atgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaat 214  Q
    |||||||||| |||||||| | ||||||| |||||| |||||||||||||||| |||| |||||||| |||||    
T  12696277 atgaagcacggatacggacac-ggacacgacacggacactgacacgccgacacagctaataatttgaaaaaat 12696348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 263
Target Start/End: Complemental strand, 9107464 - 9107355
Alignment:
Q  155 acggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtgtc 252  Q
    |||||| ||||||||| |||||| ||| |||||||||||| |||| |||||||| |||||| | | | |||| | |||||  | |||||||||| |||||    
T  9107464 acggacaccggacacgacacggacactaacacgccgacacagctaataatttgaaaaaatcac-aaaattcagtgtaattacaagtgtcggtgtcgtgtc 9107366  T
Q  253 ggtgtcggaca 263  Q
    |||||||||||    
T  9107365 ggtgtcggaca 9107355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 9629357 - 9629408
Alignment:
Q  164 ggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  9629357 ggacacgacacggatattgacacgccgacaccgccaataatttgagaaaatc 9629408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 30866253 - 30866178
Alignment:
Q  140 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    |||||||| |||||||||||| ||||||| | ||| || || ||||| || ||||||||| |||||||||||||||    
T  30866253 ctatgaagtacgaatacggacaccggacatgacactgacaccgacacaccaacaccgctaataatttgagaaaatc 30866178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 6389693 - 6389767
Alignment:
Q  140 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaat 214  Q
    |||||||||||| | || ||| ||||||||| |||||| ||| |||||||||||| | || ||||||||||||||    
T  6389693 ctatgaagcacggacacagacaccggacacgacacggacactcacacgccgacacggataataatttgagaaaat 6389767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 9658854 - 9658904
Alignment:
Q  165 gacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    |||||| |||||| ||||||||||||||||||||| |||||| ||||||||    
T  9658854 gacacgacacggacactgacacgccgacaccgctaataatttaagaaaatc 9658904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 19040339 - 19040377
Alignment:
Q  177 atactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  19040339 atactgacacgccgacaccgctaataatttgagaaaatc 19040377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 3398569 - 3398637
Alignment:
Q  140 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttga 208  Q
    |||||||||| | ||||||||  || ||||| |||||| |||||||||||||||| |||| ||||||||    
T  3398569 ctatgaagcatggatacggacatcgaacacgacacggacactgacacgccgacacagctaataatttga 3398637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 7938081 - 7938141
Alignment:
Q  155 acggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    |||||| ||||||||| || ||| |||||||||||||||| |||| |||||||| ||||||    
T  7938081 acggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatc 7938141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 13851712 - 13851760
Alignment:
Q  166 acacggcacggatactgacacgccgacaccgctactaatttgagaaaat 214  Q
    ||||| |||||| ||||||||| ||||||||||| ||||||||||||||    
T  13851712 acacgacacggacactgacacgtcgacaccgctaataatttgagaaaat 13851760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 426525 - 426478
Alignment:
Q  248 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 295  Q
    |||||||||||||||| | |||||  ||||||||||||||||||||||    
T  426525 gtgtcggtgtcggacacgcctaatctgaggagtgtccgtgcttcatag 426478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 7977924 - 7977865
Alignment:
Q  155 acggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaat 214  Q
    |||||| | ||||||| || |||||||||||||||||||| |||| |||||||| |||||    
T  7977924 acggacactggacacgacatggatactgacacgccgacacagctaataatttgaaaaaat 7977865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 20371187 - 20371144
Alignment:
Q  172 cacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    |||||| | ||||||||||||||||||| |||||||||||||||    
T  20371187 cacggacattgacacgccgacaccgctaataatttgagaaaatc 20371144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 297
Target Start/End: Complemental strand, 34073306 - 34073276
Alignment:
Q  267 ctaattcgaggagtgtccgtgcttcatagtt 297  Q
    |||||||||||||||||||||||||||||||    
T  34073306 ctaattcgaggagtgtccgtgcttcatagtt 34073276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 258
Target Start/End: Complemental strand, 34073441 - 34073337
Alignment:
Q  155 acggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtc 252  Q
    |||||| | ||||||| |||||| ||||||| ||| ||| ||||| ||||||||||||||| | ||| |||| | ||||  |||| |||||||| |||||    
T  34073441 acggacactggacacgacacggacactgacatgccaacatcgctaataatttgagaaaatctc-ataattcagtgtaattatatgggtcggtgtcgtgtc 34073343  T
Q  253 ggtgtc 258  Q
    ||||||    
T  34073342 ggtgtc 34073337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 426601 - 426548
Alignment:
Q  162 ccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    ||||||||| |||||| |||||||||||||||| | || |||||||| ||||||    
T  426601 ccggacacgacacggacactgacacgccgacacagttaataatttgaaaaaatc 426548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 2117134 - 2117175
Alignment:
Q  254 gtgtcggacatggctaattcgaggagtgtccgtgcttcatag 295  Q
    |||||||||||| |||||  ||||||||||||||||||||||    
T  2117134 gtgtcggacatgcctaatcggaggagtgtccgtgcttcatag 2117175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 7265668 - 7265627
Alignment:
Q  174 cggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    |||| ||||||||||| ||||||||| |||||||||||||||    
T  7265668 cggacactgacacgccaacaccgctaataatttgagaaaatc 7265627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 4e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 162 - 263
Target Start/End: Original strand, 22651948 - 22652050
Alignment:
Q  162 ccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtgtcggtgtcg 259  Q
    ||||||||| |||||| |||||||||||||||| |||| |||||||| |||||| | ||| |||| |||||||  | |||||||||| ||||||||||||    
T  22651948 ccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcac-ataattcaatataattacaagtgtcggtgtcgtgtcggtgtcg 22652046  T
Q  260 gaca 263  Q
    ||||    
T  22652047 gaca 22652050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 263
Target Start/End: Complemental strand, 29510396 - 29510289
Alignment:
Q  157 ggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtgtcgg 254  Q
    |||| ||||||||| |||||| |||||||||||||||| |||| |||||||| |||||| | | | |||| |||||||  | |||||||||| |||||||    
T  29510396 ggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcac-aaaattcagtataattacaagtgtcggtgtagtgtcgg 29510298  T
Q  255 tgtcggaca 263  Q
    |||||||||    
T  29510297 tgtcggaca 29510289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 25192456 - 25192388
Alignment:
Q  140 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttga 208  Q
    |||||||||||||||||||||  ||||||||  ||||| |||||||||||||||| |||| ||||||||    
T  25192456 ctatgaagcacgaatacggacatcggacacgatacggacactgacacgccgacacagctaataatttga 25192388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 926888 - 926822
Alignment:
Q  149 acgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    ||||| |||||| ||||||||| |||||| ||||||||||| ||||  ||| |||||||||||||||    
T  926888 acgaacacggacaccggacacgacacggacactgacacgccaacactcctaataatttgagaaaatc 926822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 27213519 - 27213572
Alignment:
Q  162 ccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    ||||||||| ||||||||| ||||||||||||| |||| |||||| ||||||||    
T  27213519 ccggacacgacacggatacagacacgccgacactgctaataatttcagaaaatc 27213572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 126457 - 126390
Alignment:
Q  140 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttga 208  Q
    |||||||||||| ||||| || | |||||||  ||||||||||||||||| ||||||||| ||||||||    
T  126457 ctatgaagcacggatacgcacac-ggacacgatacggatactgacacgccaacaccgctaataatttga 126390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 13437073 - 13436998
Alignment:
Q  140 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    |||||||||||| | | |||| ||||||| | || ||| |||||||||||||||| |||| |||||||| ||||||    
T  13437073 ctatgaagcacggacatggacaccggacatgacatggacactgacacgccgacacagctaataatttgaaaaaatc 13436998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 31109595 - 31109552
Alignment:
Q  172 cacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    |||||| |||||||||||||||||| || |||||||||||||||    
T  31109595 cacggacactgacacgccgacaccgttaataatttgagaaaatc 31109552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 24362298 - 24362236
Alignment:
Q  153 atacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    |||||||| ||||| ||| ||| || || |||||||||||||||||| |||||||||| ||||    
T  24362298 atacggacaccggatacgacacagacaccgacacgccgacaccgctaataatttgagagaatc 24362236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 39954346 - 39954313
Alignment:
Q  182 gacacgccgacaccgctactaatttgagaaaatc 215  Q
    |||||||||||||||||| |||||||||||||||    
T  39954346 gacacgccgacaccgctaataatttgagaaaatc 39954313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 251
Target Start/End: Complemental strand, 21782927 - 21782817
Alignment:
Q  140 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataattatgtg 239  Q
    ||||||||||||||||| ||| | ||||||| |||  | |||||||||||||||| |||| ||||||||||||||| | ||| |||| | ||||||||||    
T  21782927 ctatgaagcacgaatacagacactggacacgacacaaacactgacacgccgacactgctaataatttgagaaaatcac-ataattcagtgtaattatgtg 21782829  T
Q  240 tcggtgtggtgt 251  Q
     |||||| ||||    
T  21782828 ccggtgtcgtgt 21782817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 33519736 - 33519800
Alignment:
Q  140 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaat 204  Q
    |||||||||||| |||||||| ||||||||| | ||||||||||||| |||||||||||| ||||    
T  33519736 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 33519800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 20539783 - 20539708
Alignment:
Q  140 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    |||||||||||| |||||||| | ||||||| |||||| ||||||||| |||||| |||| |||||||| ||||||    
T  20539783 ctatgaagcacggatacggacactggacacgacacggacactgacacgtcgacacagctaataatttgaaaaaatc 20539708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 246
Target Start/End: Original strand, 4332891 - 4332981
Alignment:
Q  155 acggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataattatgtgtcggtgt 246  Q
    |||||| ||||||||||||| |||||| ||| |||||||| | || ||||||| ||||||| | ||| |||| | |||||||||||||||||    
T  4332891 acggacaccggacacggcacagatacttacatgccgacactgataataatttgggaaaatcac-ataattcaatgtaattatgtgtcggtgt 4332981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 21616737 - 21616787
Alignment:
Q  165 gacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    |||||| |||||| || |||||||||||||||||| |||||||||||||||    
T  21616737 gacacgacacggacacggacacgccgacaccgctaataatttgagaaaatc 21616787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 19536507 - 19536434
Alignment:
Q  140 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaa 213  Q
    |||||||||||  |||||||| ||||||||| |||||| | ||||||||||||||  ||| |||||||| ||||    
T  19536507 ctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaa 19536434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 23717976 - 23718048
Alignment:
Q  139 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaa 212  Q
    ||||||||||||| |||| ||| | ||||| | |||||| |||||||| |||||||||||| ||||||||||||    
T  23717976 actatgaagcacggatacagacac-ggacatgacacggacactgacacaccgacaccgctaataatttgagaaa 23718048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 24105648 - 24105720
Alignment:
Q  139 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaa 212  Q
    ||||||||||||| |||| ||| | ||||| | |||||| |||||||| |||||||||||| ||||||||||||    
T  24105648 actatgaagcacggatacagacac-ggacatgacacggacactgacacaccgacaccgctaataatttgagaaa 24105720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 19536408 - 19536361
Alignment:
Q  248 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 295  Q
    |||||||||||||||| | ||||| |||||||||||| ||||||||||    
T  19536408 gtgtcggtgtcggacacgcctaatccgaggagtgtccatgcttcatag 19536361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 19574031 - 19574078
Alignment:
Q  248 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 295  Q
    ||||||||||||||||   |||||||||||||||||| ||||||||||    
T  19574031 gtgtcggtgtcggacacacctaattcgaggagtgtccatgcttcatag 19574078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 1327976 - 1328033
Alignment:
Q  188 ccgacaccgctactaatttgagaaaatcgctatatttcattataattatgtgtcggtgt 246  Q
    |||||||||||| |||||||||||||||  || | |||| |||||||||||||||||||    
T  1327976 ccgacaccgctaataatttgagaaaatc-ataaaattcagtataattatgtgtcggtgt 1328033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 18255991 - 18255945
Alignment:
Q  248 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 294  Q
    |||||||||||||||| | ||||| | ||||||||||||||||||||    
T  18255991 gtgtcggtgtcggacacgcctaatccaaggagtgtccgtgcttcata 18255945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 34691816 - 34691770
Alignment:
Q  248 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 294  Q
    |||||||||||||||| | ||||| ||||||||||||||| ||||||    
T  34691816 gtgtcggtgtcggacacgcctaatccgaggagtgtccgtgtttcata 34691770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 34714228 - 34714182
Alignment:
Q  248 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 294  Q
    |||||||||||||||| | ||||| ||||||||||||||| ||||||    
T  34714228 gtgtcggtgtcggacacgcctaatccgaggagtgtccgtgtttcata 34714182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 263
Target Start/End: Complemental strand, 36409711 - 36409614
Alignment:
Q  165 gacacggcacggatactgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggaca 263  Q
    |||||| |||||||||| ||| ||||||||||||  |||||||| |||||| | ||| || | | |||||||||||||||||  ||| |||||| ||||    
T  36409711 gacacgacacggatactcacatgccgacaccgctgataatttgaaaaaatcac-ataatttagtgtaattatgtgtcggtgtcatgttggtgtctgaca 36409614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 240
Target Start/End: Original strand, 18276486 - 18276570
Alignment:
Q  155 acggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataattatgtgt 240  Q
    |||||| |||||||||  || || ||||| | ||||||||||||| ||||||||||||||| || || |||| | |||||||||||    
T  18276486 acggacaccggacacgatacagacactgatatgccgacaccgctaataatttgagaaaatcact-taattcagtgtaattatgtgt 18276570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 21624217 - 21624282
Alignment:
Q  141 tatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaattt 206  Q
    |||||||| || |||||||| ||| ||||| ||| || |||||||||||||||| |||| ||||||    
T  21624217 tatgaagcccggatacggacaccgaacacgacacagacactgacacgccgacacagctaataattt 21624282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 13349 - 13425
Alignment:
Q  139 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    ||||||||||||| |||||||| ||||| | | |||||| ||||||||||||||||  ||| |||||||||||||||    
T  13349 actatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatc 13425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 295
Target Start/End: Original strand, 20122 - 20279
Alignment:
Q  140 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataatt--atg 237  Q
    |||||||||||  |||||||| ||||||||| |||||| | |||||||||||||| |||| |||||||| |||||| | ||| |||| | |||||  | |    
T  20122 ctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcac-ataattcagtgtaattacaag 20220  T
Q  238 tgtcggtgtggtgtcggtgtcggacatggctaattcgaggagt---gtccgtgcttcatag 295  Q
    |||| |||| |||||||||  ||||| | ||||| ||||||||   |||||||||||||||    
T  20221 tgtcagtgtcgtgtcggtg--ggacacgcctaatccgaggagtacagtccgtgcttcatag 20279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 21978 - 21902
Alignment:
Q  139 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    ||||||||||||| |||||||| ||||| | | |||||| ||||||||||||||||  ||| |||||||||||||||    
T  21978 actatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatc 21902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 6427323 - 6427375
Alignment:
Q  163 cggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    ||||||||||||||| ||||||||||| ||||||||| |||||||||||||||    
T  6427323 cggacacggcacggacactgacacgccaacaccgctaataatttgagaaaatc 6427375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 40917716 - 40917776
Alignment:
Q  155 acggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    |||||| ||||||||| ||||||||||||||||||||||| |||| |||||||| ||||||    
T  40917716 acggacaccggacacgacacggatactgacacgccgacacagctaataatttgaaaaaatc 40917776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 398858 - 398799
Alignment:
Q  156 cggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    ||||| ||||||||| |||||| ||||||||||||||||||||| |||||||| ||||||    
T  398858 cggacaccggacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatc 398799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 48547991 - 48547938
Alignment:
Q  242 ggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 295  Q
    ||||| |||||||||||||| | | |||||||||||||||||||||||||||||    
T  48547991 ggtgtcgtgtcggtgtcggatacgcctaattcgaggagtgtccgtgcttcatag 48547938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 2896207 - 2896155
Alignment:
Q  163 cggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    |||||||  |||||| ||||||||||||||||||||| |||||||||||||||    
T  2896207 cggacacaacacggacactgacacgccgacaccgctaataatttgagaaaatc 2896155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 294
Target Start/End: Complemental strand, 10572690 - 10572535
Alignment:
Q  148 cacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataatt--atgtgtcggtg 245  Q
    |||| |||||||| ||||||||| || | | ||||||||||||||||| ||| ||||||||||||||| | ||| |||  | |||||  |||||||||||    
T  10572690 cacggatacggacaccggacacgacatgaacactgacacgccgacaccactaataatttgagaaaatcac-ataattcggtgtaattaaatgtgtcggtg 10572592  T
Q  246 tggtgtcggtgtc--------ggacatggctaattcgaggagtgtccgtgcttcata 294  Q
    | |||| ||||||        ||||| | ||||||| ||||||||||||||||||||    
T  10572591 ttgtgttggtgtcaggcacgtggacacgcctaattcaaggagtgtccgtgcttcata 10572535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 5376609 - 5376535
Alignment:
Q  139 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaat 214  Q
    ||||||| ||||| |||| || |||||||||| |||||| ||| ||||||||||||||||| |||||| |||||||    
T  5376609 actatgaggcacgtatacaga-tccggacacgacacggacactaacacgccgacaccgctaataatttaagaaaat 5376535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 12443538 - 12443494
Alignment:
Q  171 gcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    |||||||||| ||||||||||||| |||| |||||||||||||||    
T  12443538 gcacggatacggacacgccgacacagctaataatttgagaaaatc 12443494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 17831601 - 17831565
Alignment:
Q  179 actgacacgccgacaccgctactaatttgagaaaatc 215  Q
    ||||||||||||||||||||| |||||||||||||||    
T  17831601 actgacacgccgacaccgctaataatttgagaaaatc 17831565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 36878450 - 36878486
Alignment:
Q  179 actgacacgccgacaccgctactaatttgagaaaatc 215  Q
    ||||||||||||||||||||| |||||||||||||||    
T  36878450 actgacacgccgacaccgctaataatttgagaaaatc 36878486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 254
Target Start/End: Complemental strand, 1486796 - 1486703
Alignment:
Q  162 ccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataattat--gtgtcggtgtggtgtcgg 254  Q
    ||||| ||| ||||||||||||||||| ||||| |||| |||||||| |||||| | ||| |||| | |||||||  |||||||||| |||||||    
T  1486796 ccggatacgacacggatactgacacgctgacacagctaataatttgaaaaaatcac-ataattcagtgtaattataagtgtcggtgtcgtgtcgg 1486703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 38503285 - 38503386
Alignment:
Q  155 acggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtc 252  Q
    |||||| | ||||| | |||||| ||| |||| |||||||||||| |||||||||||||||  ||||||||| | ||||  |||||||||||||  ||||    
T  38503285 acggacacgggacatgacacggacactaacacaccgacaccgctaataatttgagaaaatc-atatatttcagtgtaattatatgtgtcggtgtcctgtc 38503383  T
Q  253 ggt 255  Q
    |||    
T  38503384 ggt 38503386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 48040558 - 48040503
Alignment:
Q  153 atacggactccggacacggcacggatactgacacgccgacaccgctactaatttga 208  Q
    |||||||| ||||||||| |||||| |||||||||||||||| | || ||||||||    
T  48040558 atacggacaccggacacgacacggacactgacacgccgacacagataataatttga 48040503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 1262856 - 1262933
Alignment:
Q  162 ccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataattatgtgt 240  Q
    ||||||||| |||| | || ||||||||||||| |||| ||||||||||||||| | ||| |||| |||||||| ||||    
T  1262856 ccggacacgacacgaacacggacacgccgacacagctaataatttgagaaaatcac-ataattcaatataattaagtgt 1262933  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 9709795 - 9709845
Alignment:
Q  165 gacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    |||||| |||||| ||||||| ||| ||||||||| |||||||||||||||    
T  9709795 gacacgacacggacactgacatgcctacaccgctaataatttgagaaaatc 9709845  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 34298411 - 34298461
Alignment:
Q  165 gacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    |||||| |||||| |||||||| |||||||| ||| |||||||||||||||    
T  34298411 gacacgacacggaaactgacacaccgacaccactaataatttgagaaaatc 34298461  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 39130876 - 39130822
Alignment:
Q  140 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacac 194  Q
    |||||||||||| |||||||| ||||||||| || ||||| |||||||| |||||    
T  39130876 ctatgaagcacggatacggacaccggacacgacatggatattgacacgctgacac 39130822  T

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Target: scaffold0168 (Bit Score: 38; Significance: 0.000000000006; HSPs: 3)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 295
Target Start/End: Original strand, 21002 - 21149
Alignment:
Q  149 acgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataattat--gtgtcggtgt 246  Q
    ||||| |||||| || |||||| |||||| ||||||| || ||||| | || ||||||||||||||| | |||  ||  |||||||||  |||||||| |    
T  21002 acgaacacggacaccagacacgacacggacactgacatgctgacacggttaataatttgagaaaatcac-ataagtcggtataattatatgtgtcggtat 21100  T
Q  247 ggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 295  Q
     ||||||||||| |||| | ||||| |||| ||| ||||||||||||||    
T  21101 cgtgtcggtgtcagacacgcctaatccgagaagtatccgtgcttcatag 21149  T

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Target: scaffold0168; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 21217 - 21278
Alignment:
Q  234 tatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 295  Q
    ||||||||||| | ||||||||||| |||| | ||||| |||||||| ||||||||||||||    
T  21217 tatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgaggagtatccgtgcttcatag 21278  T

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Target: scaffold0168; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 21346 - 21407
Alignment:
Q  234 tatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 295  Q
    ||||||||||| | ||||||||||| |||| | ||||| |||| |||||| |||||||||||    
T  21346 tatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgagaagtgtctgtgcttcatag 21407  T

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Target: scaffold0053 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 8763 - 8823
Alignment:
Q  155 acggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    |||||| ||||||||| |||||| |||||||||||||||| |||| |||||||| ||||||    
T  8763 acggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatc 8823  T

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Target: scaffold0007 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 225362 - 225303
Alignment:
Q  155 acggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaat 214  Q
    |||||| ||||||||| |||||| |||||||||||||||| | || ||||||||||||||    
T  225362 acggacaccggacacgacacggacactgacacgccgacacagataataatttgagaaaat 225303  T

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Target: scaffold0003 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 263
Target Start/End: Original strand, 241559 - 241668
Alignment:
Q  155 acggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataattat--gtgtcggtgtggtgtc 252  Q
    |||||| ||||||||| |||||| |||||||||||||||| |||| |||||||  |||||| | ||| || | | |||||||  |||||||||| ||||     
T  241559 acggacaccggacacgacacggacactgacacgccgacacagctaataatttggaaaaatcac-ataatttagtgtaattatgagtgtcggtgtcgtgtt 241657  T
Q  253 ggtgtcggaca 263  Q
    |||||||||||    
T  241658 ggtgtcggaca 241668  T

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Target: scaffold0004 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 92790 - 92831
Alignment:
Q  173 acggatactgacacgccgacaccgctactaatttgagaaaat 214  Q
    ||||| ||||||||||||||||||||| ||||||||||||||    
T  92790 acggacactgacacgccgacaccgctaataatttgagaaaat 92831  T

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Target: scaffold0044 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 265
Target Start/End: Original strand, 53170 - 53256
Alignment:
Q  180 ctgacacgccgacaccgctactaatttgagaaaatcgctatatttcattataattat--gtgtcggtgtggtgtcggtgtcggacatg 265  Q
    |||||||||||| ||||| | ||||||||||||||| | ||| |||| | |||||||  |||||||||  ||||||||||||||||||    
T  53170 ctgacacgccgataccgccaataatttgagaaaatcac-ataattcagtgtaattataagtgtcggtgccgtgtcggtgtcggacatg 53256  T

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Target: scaffold0018 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 178925 - 178853
Alignment:
Q  143 tgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    ||||||||| |||  ||| ||||||||| |||||| ||||||||||||||||  ||| |||||||| ||||||    
T  178925 tgaagcacggatattgacaccggacacgacacggacactgacacgccgacacaactaataatttgaaaaaatc 178853  T

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Target: scaffold0018; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 192325 - 192284
Alignment:
Q  173 acggatactgacacgccgacaccgctactaatttgagaaaat 214  Q
    ||||| |||||||||||||||||| || ||||||||||||||    
T  192325 acggacactgacacgccgacaccgttaataatttgagaaaat 192284  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 23293080 - 23293020
Alignment:
Q  155 acggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    |||||| ||||||||| |||||| | |||||||||||||| |||| |||||||| ||||||    
T  23293080 acggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatc 23293020  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 214
Target Start/End: Complemental strand, 35723455 - 35723420
Alignment:
Q  179 actgacacgccgacaccgctactaatttgagaaaat 214  Q
    ||||||||||||||||||||| ||||||||||||||    
T  35723455 actgacacgccgacaccgctaataatttgagaaaat 35723420  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 17345485 - 17345451
Alignment:
Q  179 actgacacgccgacaccgctactaatttgagaaaa 213  Q
    ||||||||||||||||||||| |||||||||||||    
T  17345485 actgacacgccgacaccgctaataatttgagaaaa 17345451  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 847918 - 847975
Alignment:
Q  157 ggactccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaat 214  Q
    |||| ||||||||| ||| || |||||||||||||  |||||| ||||||||||||||    
T  847918 ggaccccggacacgacacagacactgacacgccgatgccgctaataatttgagaaaat 847975  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 36635296 - 36635349
Alignment:
Q  162 ccggacacggcacggatactgacacgccgacaccgctactaatttgagaaaatc 215  Q
    ||||||||| | |||| ||||||||||| ||||| ||| |||||||||||||||    
T  36635296 ccggacacgactcggacactgacacgccaacaccactaataatttgagaaaatc 36635349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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