View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2786_high_5 (Length: 317)

Name: NF2786_high_5
Description: NF2786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2786_high_5
NF2786_high_5
[»] chr1 (1 HSPs)
chr1 (17-237)||(37742015-37742235)
[»] chr7 (2 HSPs)
chr7 (151-226)||(45886976-45887051)
chr7 (150-226)||(5852107-5852183)
[»] chr2 (1 HSPs)
chr2 (151-226)||(4533036-4533111)
[»] chr5 (1 HSPs)
chr5 (151-225)||(7673801-7673875)
[»] chr4 (3 HSPs)
chr4 (151-225)||(5919910-5919984)
chr4 (151-225)||(5930076-5930150)
chr4 (152-225)||(35881712-35881785)
[»] chr8 (1 HSPs)
chr8 (152-225)||(33061956-33062029)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 37742015 - 37742235
Alignment:
Q  17 tttatacaagatagttttcatattgtatatcaagcaaatagaccatttaataaaagatttaaccaagataaaagtatcctccctggaatataacgcgtgc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||| |||||||||||||||||    
T  37742015 tttatacaagatagttttcatattgtatatcaagcaaatagaccatttaataaacgctctaaccaagataaaagtatcctccttggaatataacgcgtgc 37742114  T
Q  117 aaatagaagagattttgggcaaaattaaaatggaatggtcccggcggggctcgaacccgcgaccttcggctcataagaccaacgctctaaccaactgagc 216  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37742115 aaatagaagaggttttgggcaaaattaaaatggaatggtcccggcggggctcgaacccgcgaccttcggctcataagaccaacgctctaaccaactgagc 37742214  T
Q  217 tacgggaccactcattaatca 237  Q
    |||||||||||||||||||||    
T  37742215 tacgggaccactcattaatca 37742235  T

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Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 45886976 - 45887051
Alignment:
Q  151 atggtcccggcggggctcgaacccgcgaccttcggctcataagaccaacgctctaaccaactgagctacgggacca 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45886976 atggtcccggcggggctcgaacccgcgaccttcggctcataagaccaacgctctaaccaactgagctacgggacca 45887051  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 5852183 - 5852107
Alignment:
Q  150 aatggtcccggcggggctcgaacccgcgaccttcggctcataagaccaacgctctaaccaactgagctacgggacca 226  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5852183 aatggtcccggcagggctcgaacccgcgaccttcggctcataagaccaacgctctaaccaactgagctacgggacca 5852107  T

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Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 4533111 - 4533036
Alignment:
Q  151 atggtcccggcggggctcgaacccgcgaccttcggctcataagaccaacgctctaaccaactgagctacgggacca 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4533111 atggtcccggcggggctcgaacccgcgaccttcggctcataagaccaacgctctaaccaactgagctacgggacca 4533036  T

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Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 7673875 - 7673801
Alignment:
Q  151 atggtcccggcggggctcgaacccgcgaccttcggctcataagaccaacgctctaaccaactgagctacgggacc 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7673875 atggtcccggcggggctcgaacccgcgaccttcggctcataagaccaacgctctaaccaactgagctacgggacc 7673801  T

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Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 5919910 - 5919984
Alignment:
Q  151 atggtcccggcggggctcgaacccgcgaccttcggctcataagaccaacgctctaaccaactgagctacgggacc 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5919910 atggtcccggcggggctcgaacccgcgaccttcggctcataagaccaacgctctaaccaactgagctacgggacc 5919984  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 5930076 - 5930150
Alignment:
Q  151 atggtcccggcggggctcgaacccgcgaccttcggctcataagaccaacgctctaaccaactgagctacgggacc 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5930076 atggtcccggcggggctcgaacccgcgaccttcggctcataagaccaacgctctaaccaactgagctacaggacc 5930150  T

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Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 35881712 - 35881785
Alignment:
Q  152 tggtcccggcggggctcgaacccgcgaccttcggctcataagaccaacgctctaaccaactgagctacgggacc 225  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35881712 tggtcccggcggggcttgaacccgcgaccttcggctcataagaccaacgctctaaccaactgagctacgggacc 35881785  T

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Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 33061956 - 33062029
Alignment:
Q  152 tggtcccggcggggctcgaacccgcgaccttcggctcataagaccaacgctctaaccaactgagctacgggacc 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33061956 tggtcccggcggggctcgaacccgcgaccttcggctcataagaccaacgctctaaccaactgagctacgggacc 33062029  T

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