View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2786_high_6 (Length: 310)

Name: NF2786_high_6
Description: NF2786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2786_high_6
NF2786_high_6
[»] chr5 (4 HSPs)
chr5 (1-96)||(28538973-28539068)
chr5 (194-299)||(28539166-28539271)
chr5 (1-90)||(36485618-36485707)
chr5 (194-299)||(36485811-36485919)
[»] chr4 (2 HSPs)
chr4 (1-96)||(31600667-31600762)
chr4 (194-299)||(31600463-31600569)
[»] chr2 (1 HSPs)
chr2 (194-279)||(956785-956870)
[»] chr3 (1 HSPs)
chr3 (1-93)||(54540073-54540159)


Alignment Details
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 28538973 - 28539068
Alignment:
Q  1 aaaacacccactgtcactctcctccgaccaccaccgccggtgacacctcctccttcttattcaacaatgcctctatcgcagccgtcatcctcctcc 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28538973 aaaacacccactgtcactctcctccgaccaccaccgccggtgacacctcctccttcttattcaacaatgcctctatcgcagccgtcatcctcctcc 28539068  T

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Target: chr5; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 194 - 299
Target Start/End: Original strand, 28539166 - 28539271
Alignment:
Q  194 aagaaaaattgaaatttccataactcttgttatcttaaatacaaaagatgaaaaaatgagagaagagaacaatgaaacatgtagcaccgctagctgtcta 293  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  28539166 aagaaaaattgaaatttccataactcttattatcttaaatacaaaagatgaaaaaatgagagaagagaacaatgaaacatgcagcaccgctagctgtgta 28539265  T
Q  294 agaata 299  Q
    ||||||    
T  28539266 agaata 28539271  T

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Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 36485618 - 36485707
Alignment:
Q  1 aaaacacccactgtcactctcctccgaccaccaccgccggtgacacctcctccttcttattcaacaatgcctctatcgcagccgtcatcc 90  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36485618 aaaacacccactgtcactctcctccgaccaccatcggcggtgacacctcctccttcttattcaacaatgcctctatcgcagccgtcatcc 36485707  T

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Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 194 - 299
Target Start/End: Original strand, 36485811 - 36485919
Alignment:
Q  194 aagaaaaattgaaatttccataactctt----gttatcttaaatacaaaagatgaaaaaatgagagaagagaacaatgaaacatgtagcaccgctagctg 289  Q
    |||||||||| |||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  36485811 aagaaaaatt-aaatttccataactcttattaattatcttaaatacaaaagatgaaaaaatgagagaagagaacaatgaaacatgtagcaccgctagcta 36485909  T
Q  290 tctaagaata 299  Q
    | ||||||||    
T  36485910 tgtaagaata 36485919  T

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Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 31600762 - 31600667
Alignment:
Q  1 aaaacacccactgtcactctcctccgaccaccaccgccggtgacacctcctccttcttattcaacaatgcctctatcgcagccgtcatcctcctcc 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31600762 aaaacacccactgtcactctcctccgaccaccaccgccggtgacacctcctccttcttattcaacaatgcctctatcgcagccgtcatcctcctcc 31600667  T

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Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 194 - 299
Target Start/End: Complemental strand, 31600569 - 31600463
Alignment:
Q  194 aagaaaaattgaaatttccataactcttgttatcttaaatacaaaagatgaaaaaa-tgagagaagagaacaatgaaacatgtagcaccgctagctgtct 292  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  31600569 aagaaaaattgaaatttccataactcttattatcttaaatacaaaagatgaaaaaaatgagagaagagaacaatgaaacatgtagcaccgctagctgtgt 31600470  T
Q  293 aagaata 299  Q
    |||||||    
T  31600469 aagaata 31600463  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 194 - 279
Target Start/End: Original strand, 956785 - 956870
Alignment:
Q  194 aagaaaaattgaaatttccataactcttgttatcttaaatacaaaagatgaaaaaatgagagaagagaacaatgaaacatgtagca 279  Q
    ||||||| |||||||||||||||||||| | | ||||||||||||||||| ||||| |||||||||||||||| ||||||||||||    
T  956785 aagaaaacttgaaatttccataactcttatcaccttaaatacaaaagatggaaaaaagagagaagagaacaataaaacatgtagca 956870  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 54540073 - 54540159
Alignment:
Q  1 aaaacacccactgtcactctcctccgaccaccaccgccggtgacacctcctccttcttattcaacaatgcctctatcgcagccgtcatcctcc 93  Q
    ||||||||||| ||||||||||   ||||||||||||||||||||||||   ||||||||||||||||||||| | ||||| |||||||||||    
T  54540073 aaaacacccaccgtcactctcc---gaccaccaccgccggtgacacctc---cttcttattcaacaatgcctccaccgcagacgtcatcctcc 54540159  T

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