View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2787_high_1 (Length: 548)

Name: NF2787_high_1
Description: NF2787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2787_high_1
NF2787_high_1
[»] chr6 (7 HSPs)
chr6 (13-353)||(12782092-12782432)
chr6 (409-532)||(12782488-12782611)
chr6 (13-308)||(12785531-12785826)
chr6 (13-168)||(12786271-12786426)
chr6 (13-308)||(12781341-12781636)
chr6 (410-532)||(12792161-12792288)
chr6 (210-308)||(12786462-12786560)
[»] chr4 (6 HSPs)
chr4 (13-261)||(31030344-31030592)
chr4 (13-261)||(31488841-31489089)
chr4 (13-261)||(31020463-31020711)
chr4 (75-214)||(31476303-31476442)
chr4 (87-187)||(31151041-31151141)
chr4 (67-144)||(31162296-31162375)


Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 13 - 353
Target Start/End: Original strand, 12782092 - 12782432
Alignment:
Q  13 cagaaggattaacatcataaaaaacaggcagaatgcgttttccatacaatacactgcagttaaggatgtatgctaattctcgcaaacaccaagatgaata 112  Q
    ||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  12782092 cagaaagatcaacatcataaaaaacaggcagaacgcgttttccatacaatacactgcagttaaggatgtatgctaattctcgcaaacaccaagttgaaga 12782191  T
Q  113 agcatagttcttagagaatacaacaatgaaaacctgagagccttcaattgcttgaatgaggtcggatgctatggaattacctctttgaagattaatgtca 212  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  12782192 agcatagtttttagagaatacaacaatgaaaacctgagagccttcaattgcttgaatgaggtcggatgctatggaattacctttttgaagattagtgtca 12782291  T
Q  213 tctatgaatgtaaaaattctttttctttgaagggcaccataaagttgattagtgaaattcaaacgtgtgtctgggcctctgaagctcacaaacacggtat 312  Q
    ||| ||||||||||||||||||||||||||||||||||| |||| |||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  12782292 tctctgaatgtaaaaattctttttctttgaagggcaccaaaaagatgatcagtgaaattgaaacgtgtgtctgtgcctctgaagctcacaaacacggtat 12782391  T
Q  313 gatcattctttttccttggagatgtcatgatgaactttcct 353  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12782392 gatcattctttttccttggagatgtcatgatgaactttcct 12782432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 409 - 532
Target Start/End: Original strand, 12782488 - 12782611
Alignment:
Q  409 caagttgtaactaatagcatatgaaatgtggaattaaataaaggaagaaggacgagtaatgatgaactttcctgtaacctaccgcttcaaattcaacggt 508  Q
    ||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12782488 caagttgtaactagtacaatatgaaatgtggaattaaataaaggaagaaggacgagtaatgatgaactttcctgtaacctaccgcttcaaattcaacggt 12782587  T
Q  509 ccttcttcacaatttcttagcaat 532  Q
    ||||||||||||||||||||||||    
T  12782588 ccttcttcacaatttcttagcaat 12782611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 13 - 308
Target Start/End: Original strand, 12785531 - 12785826
Alignment:
Q  13 cagaaggattaacatcataaaaaacaggcagaatgcgttttccatacaatacactgcagttaaggatgtatgctaattctcgcaaacaccaagatgaata 112  Q
    ||||||||| |||||||||||||| ||| |||||| ||||||||||   |  |||||| | |||||||||| | ||||||||||||||||||| |||| |    
T  12785531 cagaaggatcaacatcataaaaaataggaagaatgtgttttccatattttttactgcaatgaaggatgtattccaattctcgcaaacaccaagttgaaga 12785630  T
Q  113 agcatagttcttagagaatacaacaatgaaaacctgagagccttcaattgcttgaatgaggtcggatgctatggaattacctctttgaagattaatgtca 212  Q
    |||||||||||||||||||||||||||| ||| ||||||| |||||||||||  || |||  ||| ||||||| | | |||| ||| ||| ||| |||||    
T  12785631 agcatagttcttagagaatacaacaatgtaaagctgagaggcttcaattgctctaaagagtccgggtgctatgaattcaccttttttaagtttagtgtca 12785730  T
Q  213 tctatgaatgtaaaaattctttttctttgaagggcaccataaagttgattagtgaaattcaaacgtgtgtctgggcctctgaagctcacaaacacg 308  Q
    ||| |||||| |  ||| | |  |||||| |||||| || |||| ||||  |||||||| || ||||||||||||||||| |||||||||||||||    
T  12785731 tctctgaatgcattaatgcctcgtctttgtagggcagcaaaaagatgatcggtgaaattgaagcgtgtgtctgggcctctaaagctcacaaacacg 12785826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 13 - 168
Target Start/End: Original strand, 12786271 - 12786426
Alignment:
Q  13 cagaaggattaacatcataaaaaacaggcagaatgcgttttccatacaatacactgcagttaaggatgtatgctaattctcgcaaacaccaagatgaata 112  Q
    ||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||  ||| ||  || ||||||     
T  12786271 cagaaggatcaacatcataaaaaataggcagaatgcattttccatacaatacactgcagtgaaggatgtacgctaattctaccaagcaaaaacatgaatc 12786370  T
Q  113 agcatagttcttagagaatacaacaatgaaaacctgagagccttcaattgcttgaa 168  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  12786371 agcaaagttcttagagaatacaacaatgaaaacctgagagtcttcaattgcgtgaa 12786426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 13 - 308
Target Start/End: Original strand, 12781341 - 12781636
Alignment:
Q  13 cagaaggattaacatcataaaaaacaggcagaatgcgttttccatacaatacactgcagttaaggatgtatgctaattctcgcaaacaccaagatgaata 112  Q
    ||||||||| ||||||||| |||||||| |||| | |||||||||    |  |||||| | |||||||||| | ||||||||||||||||||| |||  |    
T  12781341 cagaaggatcaacatcatagaaaacaggaagaacgtgttttccatgttttttactgcaatgaaggatgtattccaattctcgcaaacaccaagttgagga 12781440  T
Q  113 agcatagttcttagagaatacaacaatgaaaacctgagagccttcaattgcttgaatgaggtcggatgctatggaattacctctttgaagattaatgtca 212  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||  || |||  ||| ||||||| | |  ||| ||| ||| ||| |||||    
T  12781441 agcatagttcttagagaatacaacaatgtaaacctgagaggcttcaattgctctaaagagtccgggtgctatgaattcgccttttttaagtttagtgtca 12781540  T
Q  213 tctatgaatgtaaaaattctttttctttgaagggcaccataaagttgattagtgaaattcaaacgtgtgtctgggcctctgaagctcacaaacacg 308  Q
    ||| |||||| |  ||| | |  |||||| |||||| || |||  ||||  |||||||| || ||||||||||||||||| |||||||||||||||    
T  12781541 tctctgaatgcattaatgcctcgtctttgtagggcagcacaaaaatgatcggtgaaattgaagcgtgtgtctgggcctctaaagctcacaaacacg 12781636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 410 - 532
Target Start/End: Original strand, 12792161 - 12792288
Alignment:
Q  410 aagttgtaactaatagcatat--gaaatgtggaattaaataaaggaagaaggacgag---taatgatgaactttcctgtaacctaccgcttcaaattcaa 504  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||   | |||||||||||||||||    |||| ||||||||||||    
T  12792161 aagttgtaactaatagcatatatgaaatgtggaattaaataaaggaagaagggcgagtgatgatgatgaactttcctgtggtttacctcttcaaattcaa 12792260  T
Q  505 cggtccttcttcacaatttcttagcaat 532  Q
    |||||||||||||||| |||||||||||    
T  12792261 cggtccttcttcacaacttcttagcaat 12792288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 210 - 308
Target Start/End: Original strand, 12786462 - 12786560
Alignment:
Q  210 tcatctatgaatgtaaaaattctttttctttgaagggcaccataaagttgattagtgaaattcaaacgtgtgtctgggcctctgaagctcacaaacacg 308  Q
    ||||| |||||||| ||||||| |||||||||||||||||||||||| |||  ||||||| |  |  ||||||||| |  ||||||| |||||||||||    
T  12786462 tcatccatgaatgtcaaaattccttttctttgaagggcaccataaagatgacaagtgaaagtgcagagtgtgtctgcgtttctgaagttcacaaacacg 12786560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 13 - 261
Target Start/End: Original strand, 31030344 - 31030592
Alignment:
Q  13 cagaaggattaacatcataaaaaacaggcagaatgcgttttccatacaatacactgcagttaaggatgtatgctaattctcgcaaacaccaagatgaata 112  Q
    ||||||||| |||||||||||||||||| ||||  ||| ||||| | | |  |||||||| |||||||| | | ||||||||||| ||||||| |||  |    
T  31030344 cagaaggatcaacatcataaaaaacaggaagaacacgtcttccagaaacttgactgcagtcaaggatgtgtaccaattctcgcaagcaccaagttgagga 31030443  T
Q  113 agcatagttcttagagaatacaacaatgaaaacctgagagccttcaattgcttgaatgaggtcggatgctatggaattacctctttgaagattaatgtca 212  Q
    ||||||||| || ||||  ||  |||||||||||||||| |||||||||||  ||||||| |||| || |||||| | |||| ||||||||||| ||||     
T  31030444 agcatagtttttggagaggaccgcaatgaaaacctgagacccttcaattgcacgaatgagctcgggtggtatggattcacctttttgaagattagtgtcg 31030543  T
Q  213 tctatgaatgtaaaaattctttttctttgaagggcaccataaagttgat 261  Q
    ||| | |||| |||||| | |||||||||||||||| || |||| ||||    
T  31030544 tctctaaatgcaaaaatgccttttctttgaagggcagcaaaaagatgat 31030592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 13 - 261
Target Start/End: Complemental strand, 31489089 - 31488841
Alignment:
Q  13 cagaaggattaacatcataaaaaacaggcagaatgcgttttccatacaatacactgcagttaaggatgtatgctaattctcgcaaacaccaagatgaata 112  Q
    ||||||||| |||||||||||||||||| ||||  ||| ||||| | | |  |||| ||| |||||||||| | ||||||||||| ||||||| |||  |    
T  31489089 cagaaggatcaacatcataaaaaacaggaagaacacgtcttccaaaaacttgactgtagtgaaggatgtattccaattctcgcaagcaccaagttgagga 31488990  T
Q  113 agcatagttcttagagaatacaacaatgaaaacctgagagccttcaattgcttgaatgaggtcggatgctatggaattacctctttgaagattaatgtca 212  Q
    ||||||||| || ||||  ||  |||||||||||||||| |||||||||||  ||||||| |||| |||||| || | |||| ||||||| ||| |||||    
T  31488989 agcatagtttttggagaggaccgcaatgaaaacctgagacccttcaattgcacgaatgagctcgggtgctatcgattcacctttttgaagcttagtgtca 31488890  T
Q  213 tctatgaatgtaaaaattctttttctttgaagggcaccataaagttgat 261  Q
    ||| | || | |||||| | |||||||||||||||| || |||| ||||    
T  31488889 tctctaaacgcaaaaatgccttttctttgaagggcagcaaaaagatgat 31488841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 13 - 261
Target Start/End: Original strand, 31020463 - 31020711
Alignment:
Q  13 cagaaggattaacatcataaaaaacaggcagaatgcgttttccatacaatacactgcagttaaggatgtatgctaattctcgcaaacaccaagatgaata 112  Q
    ||||||||| |||||||||||||||||| ||||  ||| ||||| | | |  |||||||| |||||||| | | ||||||||||| ||||||| |||  |    
T  31020463 cagaaggatcaacatcataaaaaacaggaagaacacgtcttccagaaacttgactgcagtcaaggatgtgtaccaattctcgcaagcaccaagttgagga 31020562  T
Q  113 agcatagttcttagagaatacaacaatgaaaacctgagagccttcaattgcttgaatgaggtcggatgctatggaattacctctttgaagattaatgtca 212  Q
    || |||||| || ||||  ||  |||||||||||||||| |||||||||||  ||||||| |||| || |||||| | |||| |||||||||||  |||     
T  31020563 agaatagtttttggagaggaccgcaatgaaaacctgagacccttcaattgcacgaatgagctcgggtggtatggattcacctttttgaagattagcgtcg 31020662  T
Q  213 tctatgaatgtaaaaattctttttctttgaagggcaccataaagttgat 261  Q
    ||| | |||| |||||| | |||||||||||||||| || |||| ||||    
T  31020663 tctctaaatgcaaaaatgccttttctttgaagggcagcaaaaagatgat 31020711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 75 - 214
Target Start/End: Complemental strand, 31476442 - 31476303
Alignment:
Q  75 aggatgtatgctaattctcgcaaacaccaagatgaataagcatagttcttagagaatacaacaatgaaaacctgagagccttcaattgcttgaatgaggt 174  Q
    ||||||||| | ||||||  ||| ||||||| |||  |||| |||||||| || || || |||| |||||||||||| ||||||||||| |||| ||| |    
T  31476442 aggatgtattccaattctttcaagcaccaagttgagaaagcgtagttctttgacaagaccacaacgaaaacctgagacccttcaattgcatgaaagagtt 31476343  T
Q  175 cggatgctatggaattacctctttgaagattaatgtcatc 214  Q
    | | ||||||||| | |||| ||||||||||| |||||||    
T  31476342 caggtgctatggattcacctttttgaagattagtgtcatc 31476303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 31151041 - 31151141
Alignment:
Q  87 aattctcgcaaacaccaagatgaataagcatagttcttagagaatacaacaatgaaaacctgagagccttcaattgcttgaatgaggtcggatgctatgg 186  Q
    ||||||||||||||||||  |||  ||||||||||||||||||| || ||||  |||| ||||||| ||||||||||| ||| ||| || | ||||||||    
T  31151041 aattctcgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatgg 31151140  T
Q  187 a 187  Q
    |    
T  31151141 a 31151141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 144
Target Start/End: Original strand, 31162296 - 31162375
Alignment:
Q  67 tgcagttaaggatgtatgctaattctcgcaaacaccaaga--tgaataagcatagttcttagagaatacaacaatgaaaa 144  Q
    |||||| ||||||| || |||||||| |||| |||||| |  |||  |||||||||||||||| ||||| ||||||||||    
T  31162296 tgcagtgaaggatggattctaattcttgcaagcaccaatagttgaggaagcatagttcttagaaaataccacaatgaaaa 31162375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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