View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2787_high_12 (Length: 294)
Name: NF2787_high_12
Description: NF2787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2787_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 62 - 156
Target Start/End: Original strand, 2155093 - 2155189
Alignment:
| Q |
62 |
ctagacatgtccacacactatgtcatttata--tgccccgtttgttattcattcagcactaaaagtagataaacaaatatgggtatgtttaatcagg |
156 |
Q |
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| T |
2155093 |
ctagacatgtccacacactatgtcatttatatatgccccgtttattattcattcagcactaaaagtagataaacaaatatgggtatgtttaatcagg |
2155189 |
T |
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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 2155036 - 2155071
Alignment:
| Q |
18 |
atgtatttaaatgttaatattgcccatagttatgat |
53 |
Q |
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| T |
2155036 |
atgtatttaaatgttaatattgcccatagttatgat |
2155071 |
T |
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