View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2787_high_14 (Length: 275)
Name: NF2787_high_14
Description: NF2787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2787_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 29 - 258
Target Start/End: Original strand, 35363944 - 35364176
Alignment:
| Q |
29 |
tcagagaaataattagatgggaga--gagatcaatacatccaatccaaaatcaatgaatattacgatgaataccgatctagatcatcaacgatcatgaca |
126 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35363944 |
tcagagaaataattagatgggagagagagatcaatacatccaatccaaaatcaatgaatattacgatgaatgccgatctagatcatcaacgatcatgaca |
35364043 |
T |
|
| Q |
127 |
atcaccttccaatga-nnnnnnngaaatccctctaattgcttttatggattgaacattcaccttctgtcactgtcttcgctccctctgattcataatgga |
225 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35364044 |
atcaccttccaatgattttttttgaaatccctctaattgcttttatgtattgaacattcaccttctgtcactgtcttcactccctctgattcataatggg |
35364143 |
T |
|
| Q |
226 |
aggaaaaattataggaacacgttcaacaaacac |
258 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
35364144 |
aggaaaaactataggaacacgttcaacaaacac |
35364176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 80 - 192
Target Start/End: Complemental strand, 32662747 - 32662635
Alignment:
| Q |
80 |
atgaatattacgatgaataccgatctagatcatcaacgatcatgacaatcaccttccaatgannnnnnngaaatccctctaattgcttttatggattgaa |
179 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| | ||| |||||| |||||||||||||| |||||||| |
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| T |
32662747 |
atgaatattatgatgaataccgatctagatcagcaacgatcatgacaatcaccttctagtgaatgttttgaaatctatctaattgcttttacggattgaa |
32662648 |
T |
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| Q |
180 |
cattcaccttctg |
192 |
Q |
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| T |
32662647 |
cattcaccttctg |
32662635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 192
Target Start/End: Complemental strand, 32656147 - 32656111
Alignment:
| Q |
157 |
tctaattgctttt-atggattgaacattcaccttctg |
192 |
Q |
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| T |
32656147 |
tctaattgctttttatggattgaacattcaccttctg |
32656111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 204
Target Start/End: Complemental strand, 21786803 - 21786651
Alignment:
| Q |
50 |
agagagatcaatacatccaatccaaaatcaatgaatattacgatgaataccgatctagatcatcaacgatcatgacaatcaccttccaatgannnnnnng |
149 |
Q |
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||||||| | ||||||| ||||||| |||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
21786803 |
agagagaccgatacatcgaatccaac--caatgaatattatgaagaatacctatctagatcatcaacgatcatgacaatcaccttccggtgaatttttaa |
21786706 |
T |
|
| Q |
150 |
aaatccctctaattgcttttatggattgaacattcaccttctgtcactgtcttcg |
204 |
Q |
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|||||||||||||||||| ||| ||||||| | ||||| || | ||||||||||| |
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| T |
21786705 |
aaatccctctaattgcttgtatcgattgaataatcaccctccgccactgtcttcg |
21786651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 38682108 - 38682039
Alignment:
| Q |
50 |
agagagatcaatacatccaatccaaaatcaatgaatattacgatgaataccgatctagatcatcaacgatca |
121 |
Q |
| |
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||||||| | |||||| |||||||| |||||||||||| || ||||||| ||||||||||| |||||||| |
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| T |
38682108 |
agagagaccgatacattcaatccaac--caatgaatattatgaagaatacctatctagatcataaacgatca |
38682039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 38683361 - 38683292
Alignment:
| Q |
50 |
agagagatcaatacatccaatccaaaatcaatgaatattacgatgaataccgatctagatcatcaacgatca |
121 |
Q |
| |
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||||||| | |||||| |||||||| |||||||||||| || ||||||| ||||||||||| |||||||| |
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| T |
38683361 |
agagagaccgatacattcaatccaac--caatgaatattatgaagaatacctatctagatcataaacgatca |
38683292 |
T |
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