View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2787_high_19 (Length: 255)
Name: NF2787_high_19
Description: NF2787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2787_high_19 |
 | |
|
| [»] scaffold0352 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 29199775 - 29199552
Alignment:
| Q |
16 |
atggctaaacagaaacatcgaaagcagacctgaatttgaagtagcagaggnnnnnnncttacataaacaaaacacataatgcagcataacacacaccgac |
115 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29199775 |
atggctaaacagaaacatcgaaagcaggcctgaatttgaagtagcagaggaaaaaaacttacataaacaaaacacataatgcagcataacacacaccgac |
29199676 |
T |
|
| Q |
116 |
agccacgaagaaaaagctccctcacaaacgattaaagatctaacaaagcacatccaaatttgaatgctttgtaaacttccaatacactgaaatgatttaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29199675 |
agccacgaagaaaaagctccctcacaaacgattaaagatctaacaaagcacatccaaatttgaatgctttgtaaacttccaatacactgaaatgatttaa |
29199576 |
T |
|
| Q |
216 |
gaaagagaacataaaagtgatatc |
239 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
29199575 |
gaaagaggacataaaagtgatatc |
29199552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 19768260 - 19768134
Alignment:
| Q |
16 |
atggctaaacagaaacatcgaaagcagacctgaatttgaagtagcag---aggnnnnnnncttacataaacaaaacacataatgcagcataacacacacc |
112 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19768260 |
atggctaaacagaaacattgaaggcagacctgaatttgaagtagcagcagaggaaaaaaacttacataaacaaaacacataatgcagtataacacacact |
19768161 |
T |
|
| Q |
113 |
gacagccacgaagaaaaagctccctca |
139 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
19768160 |
gacagccacgaagaaaaagctccctca |
19768134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 12572353 - 12572461
Alignment:
| Q |
16 |
atggctaaacagaaacatcgaaagcagacctgaatttgaagtagcag---aggnnnnnnncttacataaacaaaacacataatgcagcataacacacacc |
112 |
Q |
| |
|
||||||||| ||||| || ||| |||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| || |||||||||| |
|
|
| T |
12572353 |
atggctaaaaagaaaaattgaaggcagacctgaatttgaagtagcagcgcaggcaaaaaacttacataaacaaaacacacaatgccgcgtaacacacact |
12572452 |
T |
|
| Q |
113 |
gacagccac |
121 |
Q |
| |
|
||| ||||| |
|
|
| T |
12572453 |
gactgccac |
12572461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 13548817 - 13548925
Alignment:
| Q |
16 |
atggctaaacagaaacatcgaaagcagacctgaatttgaagtagcag---aggnnnnnnncttacataaacaaaacacataatgcagcataacacacacc |
112 |
Q |
| |
|
||||||||| ||||| || ||| |||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| || |||||||||| |
|
|
| T |
13548817 |
atggctaaaaagaaaaattgaaggcagacctgaatttgaagtagcagcgcaggcaaaaaacttacataaacaaaacacacaatgccgcgtaacacacact |
13548916 |
T |
|
| Q |
113 |
gacagccac |
121 |
Q |
| |
|
||| ||||| |
|
|
| T |
13548917 |
gactgccac |
13548925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 4351747 - 4351521
Alignment:
| Q |
16 |
atggctaaacagaaacatcgaaagcagacctgaatttgaagtagcag---aggnnnnnnncttacataaacaaaacacataatgcagcataacacacacc |
112 |
Q |
| |
|
||||||||| ||||| |||||| |||||||| ||||||||||||||| ||| ||||||||||||||||| | ||||| || |||||||||| |
|
|
| T |
4351747 |
atggctaaaaagaaaaatcgaaggcagacctaaatttgaagtagcagcgcaggaacaaaacttacataaacaaaacaaacaatgccgcgtaacacacact |
4351648 |
T |
|
| Q |
113 |
gacagccacgaagaaaaa-gctccctcacaaacgattaaagatctaacaaagcacatccaaatttgaatgctttgtaaacttccaatacactgaaatgat |
211 |
Q |
| |
|
||| |||||||| ||||| |||||||||||||||||| |||||||||||| || ||||| || |||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
4351647 |
gactgccacgaaaaaaaaagctccctcacaaacgattcaagatctaacaatgcccatccgaaattgaatgctt-gtaaacttccaatgcactgaaatgat |
4351549 |
T |
|
| Q |
212 |
ttaagaaagagaacataaaagtgatatc |
239 |
Q |
| |
|
| ||||||||| |||||||| ||||||| |
|
|
| T |
4351548 |
tcaagaaagaggacataaaaatgatatc |
4351521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 127 - 239
Target Start/End: Original strand, 15387 - 15498
Alignment:
| Q |
127 |
aaaagctccctcacaaacgattaaagatctaacaaagcacatccaaatttgaatgctttgtaaacttccaatacactgaaatgatttaagaaagagaaca |
226 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| || ||||| || || ||||||| ||||||||||||| ||| ||||||||| ||||||||| ||| |
|
|
| T |
15387 |
aaaagctccctcacaaacgattcaagatctaacaatgcccatccgaaattaaatgctt-gtaaacttccaatgcacagaaatgattcaagaaagaggaca |
15485 |
T |
|
| Q |
227 |
taaaagtgatatc |
239 |
Q |
| |
|
||||||||||||| |
|
|
| T |
15486 |
taaaagtgatatc |
15498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 22082953 - 22082827
Alignment:
| Q |
16 |
atggctaaacagaaacatcgaaagcagacctgaatttgaagtagcagaggnnnnnnn---cttacataaacaaaacacataatgcagcataacacacacc |
112 |
Q |
| |
|
||||| |||||||||||| ||| ||| |||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
22082953 |
atggcaaaacagaaacattgaaggcatacctgaatttgaagtagcagcggagaaaaaaaacttacataaacaaaacacataatgcagtataacacacact |
22082854 |
T |
|
| Q |
113 |
gacagccacgaagaaaaagctccctca |
139 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
22082853 |
gacagccacgaagaaaaagctccctca |
22082827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 74 - 217
Target Start/End: Original strand, 51389747 - 51389888
Alignment:
| Q |
74 |
ttacataaacaaaacacataatgcagcataacacacaccgacagccacgaagaaaaagctccctcacaaacgattaaagatctaacaaagcacatccaaa |
173 |
Q |
| |
|
||||||||||||| |||| || ||||||||||| ||||||| |||||| |||||| || |||||||||||||||| || ||| ||||||| ||||| || |
|
|
| T |
51389747 |
ttacataaacaaaccacacaacgcagcataacatacaccgatagccacaaagaaatag-tccctcacaaacgattcaaagtcttacaaagcccatccgaa |
51389845 |
T |
|
| Q |
174 |
tttgaatgctttgtaaacttccaatacactgaaatgatttaaga |
217 |
Q |
| |
|
|| |||||| | ||||| ||||||| ||||||||||||| |||| |
|
|
| T |
51389846 |
ttcgaatgc-tagtaaatttccaatgcactgaaatgattcaaga |
51389888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 37617082 - 37617148
Alignment:
| Q |
73 |
cttacataaacaaaacacataatgcagcataacacacaccgacagccacgaagaaaaagctccctca |
139 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
37617082 |
cttacataaacaaaacacataatgcagtataacacacgctgacagccacgaagaaaaagctccctca |
37617148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University