View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2787_high_29 (Length: 206)
Name: NF2787_high_29
Description: NF2787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2787_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 28252837 - 28253009
Alignment:
| Q |
16 |
taaacatcatcatgttatctcgtc--cccaataagtaatatcattatcaaattgtcaaggtctatcaagtaaaatatgaaaaacattcatattaagaaca |
113 |
Q |
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| T |
28252837 |
taaacatcatcatgttatctcgtctccccaacaagtaatatcattatcaaattgtcaaggtctaccaagtaaaatatgaaaaacattcatattaagaaca |
28252936 |
T |
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| Q |
114 |
tcacagagtacctctcttctttgtaatgcttgccgatggagataggaactctgcaggatagtgttgctcgaatct |
188 |
Q |
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| T |
28252937 |
tcacagagtac--ctcttctttgtaatgcttgccgatggagataggaactctgcaggatagtgttactcgaatct |
28253009 |
T |
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Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 171
Target Start/End: Complemental strand, 3537737 - 3537584
Alignment:
| Q |
16 |
taaacatcatcatgttatctcgtccccaataagtaatatcattatcaaattgtcaaggtctatcaagtaaaatatgaaaaacattcatattaagaacatc |
115 |
Q |
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|||||| ||||| ||||| ||||||| ||||||||||||||||||||| || ||||||||| |||||||||||||| |||||| ||||| ||||||||| |
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| T |
3537737 |
taaacaacatcacattatcccgtccccgataagtaatatcattatcaaactgccaaggtctaccaagtaaaatatgacaaacatccatatcaagaacatc |
3537638 |
T |
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| Q |
116 |
acagagtacctctcttctttgtaatgcttgccgatggagataggaactctgcagga |
171 |
Q |
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| T |
3537637 |
acaaagtac--ctcttctttataatgtttgccgatggatataggaactttgcagga |
3537584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 22925051 - 22925177
Alignment:
| Q |
44 |
ataagtaatatcattatcaaattgtcaaggtctatcaagtaaaatatgaaaaacattcatattaagaacatcacagagtacctctcttctttgtaatgct |
143 |
Q |
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||||||||||||||||||||| || ||||||||| |||||||||||||| |||||| ||||| |||||||||||| ||||| ||||||| | ||||| | |
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| T |
22925051 |
ataagtaatatcattatcaaactgccaaggtctaccaagtaaaatatgacaaacatccatatcaagaacatcacaaagtac--ctcttctctataatgtt |
22925148 |
T |
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| Q |
144 |
tgccgatggagataggaactctgcaggat |
172 |
Q |
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| T |
22925149 |
tgccgatggatataggaactttgcaggat |
22925177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 69 - 172
Target Start/End: Complemental strand, 2165415 - 2165314
Alignment:
| Q |
69 |
caaggtctatcaagtaaaatatgaaaaacattcatattaagaacatcacagagtacctctcttctttgtaatgcttgccgatggagataggaactctgca |
168 |
Q |
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||||||||| |||||||||||||| |||||| |||| |||||||||||| ||||| ||||||| | ||||| ||||||||||| ||||||||| |||| |
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| T |
2165415 |
caaggtctaccaagtaaaatatgacaaacatcaatatcaagaacatcacaaagtac--ctcttctctataatgtttgccgatggatataggaactttgca |
2165318 |
T |
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| Q |
169 |
ggat |
172 |
Q |
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|||| |
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| T |
2165317 |
ggat |
2165314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 8966485 - 8966555
Alignment:
| Q |
54 |
tcattatcaaattgtcaaggtctatcaagtaaaatatgaaaaacattcatattaagaacatcacagagtac |
124 |
Q |
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||||||||||| |||||| |||| |||||||||||||| ||||||| ||| |||||||||||| ||||| |
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| T |
8966485 |
tcattatcaaactgtcaaagtctgccaagtaaaatatgacaaacatttgtatcaagaacatcacatagtac |
8966555 |
T |
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