View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2787_high_30 (Length: 206)
Name: NF2787_high_30
Description: NF2787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2787_high_30 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 40506332 - 40506127
Alignment:
| Q |
1 |
tataacttactttgtaaaaggatagtgtgagatacatttcatagaatcattgatcaagagacaaaatacagtgattcccttcctagaaagtaatctgcat |
100 |
Q |
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| T |
40506332 |
tataacttactttgtaaaaggataatgtgagatacatttcatagaatcattgatcaagagacaaaatacagtgatttccttcctagaaagtaatctgcat |
40506233 |
T |
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| Q |
101 |
gatcatcgtgcagaggttgtaggattcaaattggtatgaatctcaataaatcaatgcactttcgtctgtctactttgtgcaatcttttattctgcgaatt |
200 |
Q |
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| T |
40506232 |
gatcatcgtgcagaggttgtaggattcaaattgttatgaatctcgataaatcaatgcacgttcgtctgtctactttgtgcaatcttttattccgcgaatt |
40506133 |
T |
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| Q |
201 |
tcagtt |
206 |
Q |
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|||||| |
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| T |
40506132 |
tcagtt |
40506127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 22138823 - 22138618
Alignment:
| Q |
1 |
tataacttactttgtaaaaggatagtgtgagatacatttcatagaatcattgatcaagagacaaaatacagtgattcccttcctagaaagtaatctgcat |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
22138823 |
tataacttactttgtaaaaggataatgtgagatacatttcatagaatcattgatcaagagacaaaatacagtgatttccttcctanaaagtaatctgcat |
22138724 |
T |
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| Q |
101 |
gatcatcgtgcagaggttgtaggattcaaattggtatgaatctcaataaatcaatgcactttcgtctgtctactttgtgcaatcttttattctgcgaatt |
200 |
Q |
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| T |
22138723 |
gatcatcgtgcagaggttgtaggattcaaattgttatgaatctcgataaatcaatgcacgttcgtctgtctactttgtgcaatcttttattccgcgaatt |
22138624 |
T |
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| Q |
201 |
tcagtt |
206 |
Q |
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|||||| |
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| T |
22138623 |
tcagtt |
22138618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 50746363 - 50746400
Alignment:
| Q |
36 |
atttcatagaatcattgatcaagagacaaaatacagtg |
73 |
Q |
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| T |
50746363 |
atttcatagaatcattgatcaagagagaaaatagagtg |
50746400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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