View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2787_low_11 (Length: 346)
Name: NF2787_low_11
Description: NF2787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2787_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 328
Target Start/End: Complemental strand, 6133588 - 6133270
Alignment:
| Q |
10 |
ataagaaattgtgtgacagcacaagaggcttggaatcacttaaaagctgtttttagcgaagatttaagagcagacaaatcttacaatgatattgagcaag |
109 |
Q |
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| T |
6133588 |
ataagaaattgtgtgacagcacaagaggcttggaatcacttaaaagctgtttttagcgaagatttaagagcagacaaatcttacaatgatattgagcaag |
6133489 |
T |
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| Q |
110 |
gaggtcttcaaagtgatattgacaagtttcatgtagcagtgaagaaaggcatgtggaatgacgcgattttgtttatcaggaatgacggagatattatttc |
209 |
Q |
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| T |
6133488 |
gaggtcttcaaagtgatattgacaagtttcatgtagcagtgaagaaaggcatgtggaatgacgcgattttgtttatcaggaatgacggagatattatttc |
6133389 |
T |
|
| Q |
210 |
gcaaaagtcatcctctaatggttggacttctcttcacgttgcagttgatgcaggacaagataaaatcatgcaggagttggttgaaatgggggcattgctg |
309 |
Q |
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| T |
6133388 |
gcaaaagtcaccctctaatggttggacttctcttcacgttgcagttgatgcaggacaagataaaatcatgcagaagttggttgaaatgggggcattgctg |
6133289 |
T |
|
| Q |
310 |
acagagaaagactgggagg |
328 |
Q |
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| T |
6133288 |
acagagaaagactgggagg |
6133270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 9 - 328
Target Start/End: Complemental strand, 6866305 - 6865995
Alignment:
| Q |
9 |
gataagaaattgtgtgacagcacaagaggcttggaatcacttaaaagctgtttttagcgaagatttaagagcagacaaatcttacaatgatattgagcaa |
108 |
Q |
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||||||||||||||| |||||||||||||| ||||||| ||||| || | |||||||||| |||||| |||||| || |||||||||||| |
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| T |
6866305 |
gataagaaattgtgtaacagcacaagaggcctggaatcggttaaaggccgcttttagcgaaaatttaaatgcagaccaa---------gatattgagcaa |
6866215 |
T |
|
| Q |
109 |
ggaggtcttcaaagtgatattgacaagtttcatgtagcagtgaagaaaggcatgtggaatgacgcgattttgtttatcaggaatgacggagatattattt |
208 |
Q |
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||||||||||||| ||| ||||||||||||||||| ||| |||||||||||||||||||||| || ||| |||||||||| | || ||||||||||||| |
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| T |
6866214 |
ggaggtcttcaaactgacattgacaagtttcatgtggcactgaagaaaggcatgtggaatgatgcaattctgtttatcagccaagatggagatattattt |
6866115 |
T |
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| Q |
209 |
cgcaaaagtcatcctctaatggttggacttctcttcacgttgcagttgatgcaggacaagataaaatcatgcaggagttggttgaaatgggggcattgct |
308 |
Q |
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| |||||||| ||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6866114 |
ctcaaaagtcgtcctcgaaaggctggacttctcttcatgttgcagttgatgcaggacaagataaaatcatgaaggagttggttgaaatgggggcattgct |
6866015 |
T |
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| Q |
309 |
gacagagaaagactgggagg |
328 |
Q |
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| T |
6866014 |
gacagaggaagattgggagg |
6865995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 95 - 328
Target Start/End: Original strand, 6088167 - 6088400
Alignment:
| Q |
95 |
atgatattgagcaaggaggtcttcaaagtgatattgacaagtttcatgtagcagtgaagaaaggcatgtggaatgacgcgattttgtttatcaggaatga |
194 |
Q |
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||||||||||||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||||||||||| ||||| ||||| || ||||| ||| |
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| T |
6088167 |
atgatattgagcaaggaggtcttcaaactgacattgacatgtttcatgtggcagtgaagaaaggcatgtggaacgacgcaattttcttcatcagacgtga |
6088266 |
T |
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| Q |
195 |
cggagatattatttcgcaaaagtcatcctctaatggttggacttctcttcacgttgcagttgatgcaggacaagataaaatcatgcaggagttggttgaa |
294 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| || |
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| T |
6088267 |
tggagatattatttcacaaaagtcatcctttaatggttggacttctcttcacgttgcagttgatgctggacaagataaaatcatgaaggagttggttaaa |
6088366 |
T |
|
| Q |
295 |
atgggggcattgctgacagagaaagactgggagg |
328 |
Q |
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|||||||||||| ||||||||| ||| ||||||| |
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| T |
6088367 |
atgggggcattgttgacagagagagattgggagg |
6088400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 6088058 - 6088132
Alignment:
| Q |
10 |
ataagaaattgtgtgacagcacaagaggcttggaatcacttaaaagctgtttttagcgaagatttaagagcagac |
84 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||| || || ||||||||||||||||||||| |
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| T |
6088058 |
ataagaaattgtgtaacagcacaagaggcttggaatcacttaaaagttgccttcagcgaagatttaagagcagac |
6088132 |
T |
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