View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2787_low_12 (Length: 340)
Name: NF2787_low_12
Description: NF2787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2787_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 28111407 - 28111627
Alignment:
| Q |
11 |
cacagaggaaagagcagaatctggtggtaggacatgcctcctggaaagattgactctggtcgggatccttccacgtaaaagcttccaagaaaaggcaatc |
110 |
Q |
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| T |
28111407 |
cacacaggaaagagcagaatctggtggtaagacatgcctcctgaaaagattgactctggtcgggatccttccacgtaaaagcttccaagaaaaggcaatc |
28111506 |
T |
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| Q |
111 |
accttggccggtgccgggcttttccaaatatgtgtgaacgccaacagctgcacctctgacagtgggtcagacaccaccatgtcatccaatttcctataca |
210 |
Q |
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| T |
28111507 |
accttggccggtgccgggcttttccaaatatgtgtgaacgccaacagctgcacctctgacagtgggtcagacaccactatgtcatccaatttcctataca |
28111606 |
T |
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| Q |
211 |
tggaactcaccgaaaaggaac |
231 |
Q |
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||||||||||||||||||||| |
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| T |
28111607 |
tggaactcaccgaaaaggaac |
28111627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 230 - 295
Target Start/End: Original strand, 40383201 - 40383266
Alignment:
| Q |
230 |
actctctccatctaacattagggtgtcctattttagttttacaccattgaaatgcaataaataagg |
295 |
Q |
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| T |
40383201 |
actctctccgtctaacattagggtgtcctattttagttttacatgattgaaatgcaataaataagg |
40383266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 140
Target Start/End: Original strand, 33131776 - 33131847
Alignment:
| Q |
69 |
gtcgggatccttccacgtaaaagcttccaagaaaaggcaatcaccttggccggtgccgggcttttccaaata |
140 |
Q |
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| T |
33131776 |
gtcgggatcctatcgcgaaagagcttccaagagaaggcaatcacctttgtcggtgccggactcttccaaata |
33131847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 1611290 - 1611236
Alignment:
| Q |
87 |
aaaagcttccaagaaaaggcaatcaccttggccggtgccgggcttttccaaatat |
141 |
Q |
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| T |
1611290 |
aaaagcttccaagagaaggccaccactttggacggtgccggacttttccaaatat |
1611236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 24836837 - 24836738
Alignment:
| Q |
16 |
aggaaagagcagaatctggtggtaggacatgcctcctggaaagattgactctggtcgggatccttccacgtaaaagcttccaagaaaaggcaatcacctt |
115 |
Q |
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| T |
24836837 |
aggaaagagcagaatctggtggtaagacatgcctcctgaaaagattgactctggtcgggatccttccacgtaaaagcttcccagaaaaggcaatcacctt |
24836738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 34326067 - 34325847
Alignment:
| Q |
11 |
cacagaggaaagagcagaatctggtggtaggacatgcctcctggaaagattgactctggtcgggatccttccacgtaaaagcttccaagaaaaggcaatc |
110 |
Q |
| |
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|||| ||||||||| || || ||||| |||||||||||||| || || ||| |||| ||||| |||||| | || | || ||||||||||||||||||| |
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| T |
34326067 |
cacacaggaaagagtggagtccggtggaaggacatgcctcctcgataggttggctctagtcggtatcctttcgcgaagaaacttccaagaaaaggcaatc |
34325968 |
T |
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| Q |
111 |
accttggccggtgccgggcttttccaaatatgtgtgaacgccaacagctgcacctctgacagtgggtcagacaccaccatgtcatccaatttcctataca |
210 |
Q |
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| T |
34325967 |
acctttggcggtgccggactcttccaaatatgtgaaaacgctgacagctgcacctccgttcgcgggacgatcaccaccaattcatccaatttcctataca |
34325868 |
T |
|
| Q |
211 |
tggaactcaccgaaaaggaac |
231 |
Q |
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||||||||||||||||||||| |
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| T |
34325867 |
tggaactcaccgaaaaggaac |
34325847 |
T |
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