View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2787_low_14 (Length: 315)
Name: NF2787_low_14
Description: NF2787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2787_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 20 - 306
Target Start/End: Original strand, 35772889 - 35773175
Alignment:
| Q |
20 |
gaagccaccaaaaggagttaaaactaattggattatgcatgagtataggctcatcactgatcacaataatcatcattcttataatgcaacttcaaaaact |
119 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35772889 |
gaagccaccaaaaggagtgaaaactaattggattatgcatgagtacaggctcatcactgatcacaataatcatcattcttataatgcaacttcaaaaact |
35772988 |
T |
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| Q |
120 |
cctcctctgccttctgatcatcctccaaataataacaagaagaattccctaagggtatgtatatgcaaaacacatatttgcatgtcatgtgcatttgttc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35772989 |
cctcctctgccttctgatcatcctccaaataataacaagaagaattccctaagggtatgtatatgcaaaacacatatttgcatgtcatgtgcatttgttc |
35773088 |
T |
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| Q |
220 |
cataagtttaataaataattgaacattgacactaatcatatcttctctatgttccttttttgaatggtctgatctttatagtataat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35773089 |
cataagtttaataaataattgaacattgacactaatcatatcttctctatgttccttttttgaatggtctgatctttatagtttaat |
35773175 |
T |
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Back To:
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 20701848 - 20701888
Alignment:
| Q |
25 |
caccaaaaggagttaaaactaattggattatgcatgagtat |
65 |
Q |
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| T |
20701848 |
caccaaaaggaacaaaaactaattggattatgcatgagtat |
20701888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 44371255 - 44371283
Alignment:
| Q |
30 |
aaaggagttaaaactaattggattatgca |
58 |
Q |
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| T |
44371255 |
aaaggagttaaaactaattggattatgca |
44371283 |
T |
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