View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2787_low_19 (Length: 281)

Name: NF2787_low_19
Description: NF2787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2787_low_19
NF2787_low_19
[»] chr5 (23 HSPs)
chr5 (1-275)||(28253234-28253508)
chr5 (31-255)||(15544034-15544247)
chr5 (31-255)||(28142347-28142563)
chr5 (3-81)||(17769461-17769539)
chr5 (25-114)||(18208281-18208369)
chr5 (64-145)||(34487654-34487735)
chr5 (172-264)||(26307727-26307819)
chr5 (31-185)||(23380219-23380373)
chr5 (184-275)||(29263463-29263553)
chr5 (3-111)||(24266990-24267097)
chr5 (3-111)||(24343621-24343728)
chr5 (102-162)||(32452426-32452486)
chr5 (55-264)||(24852064-24852264)
chr5 (28-145)||(27921403-27921519)
chr5 (4-82)||(20744876-20744953)
chr5 (64-117)||(26120881-26120934)
chr5 (181-264)||(19086071-19086153)
chr5 (48-114)||(19004258-19004325)
chr5 (50-117)||(32581889-32581956)
chr5 (235-273)||(15492749-15492787)
chr5 (60-117)||(24167613-24167671)
chr5 (31-145)||(32417357-32417471)
chr5 (213-254)||(32448120-32448160)
[»] chr4 (26 HSPs)
chr4 (41-274)||(19900573-19900795)
chr4 (25-275)||(15049965-15050204)
chr4 (25-275)||(15104220-15104459)
chr4 (31-185)||(20317743-20317893)
chr4 (36-152)||(22345009-22345123)
chr4 (3-117)||(17216773-17216887)
chr4 (46-264)||(20314998-20315206)
chr4 (64-255)||(40215221-40215400)
chr4 (4-80)||(13128941-13129016)
chr4 (84-153)||(23080378-23080447)
chr4 (169-264)||(9737402-9737497)
chr4 (14-117)||(21323904-21324007)
chr4 (53-212)||(25643468-25643620)
chr4 (193-255)||(1833498-1833560)
chr4 (60-117)||(13692698-13692756)
chr4 (195-264)||(11700466-11700534)
chr4 (25-82)||(13587208-13587265)
chr4 (64-153)||(22218594-22218683)
chr4 (3-77)||(15164723-15164796)
chr4 (224-272)||(23080496-23080544)
chr4 (31-145)||(19492701-19492815)
chr4 (60-117)||(13908866-13908924)
chr4 (60-146)||(25121226-25121312)
chr4 (32-117)||(10106995-10107080)
chr4 (223-264)||(22526530-22526571)
chr4 (232-264)||(11521086-11521118)
[»] chr7 (39 HSPs)
chr7 (3-275)||(20174527-20174798)
chr7 (6-117)||(2563777-2563887)
chr7 (32-214)||(23093294-23093481)
chr7 (165-255)||(5797618-5797708)
chr7 (60-171)||(15303596-15303707)
chr7 (32-152)||(2453717-2453837)
chr7 (31-254)||(10937585-10937798)
chr7 (31-182)||(33035456-33035608)
chr7 (16-96)||(5047437-5047517)
chr7 (165-255)||(21912381-21912472)
chr7 (34-250)||(9864233-9864438)
chr7 (193-250)||(18449671-18449728)
chr7 (181-254)||(18466129-18466201)
chr7 (30-146)||(9866541-9866657)
chr7 (31-145)||(21227161-21227277)
chr7 (32-144)||(26134750-26134862)
chr7 (32-124)||(9890167-9890260)
chr7 (26-122)||(9916544-9916641)
chr7 (26-122)||(9924456-9924553)
chr7 (193-258)||(36117446-36117511)
chr7 (165-264)||(21885048-21885148)
chr7 (3-82)||(1587637-1587715)
chr7 (15-117)||(16365673-16365775)
chr7 (32-117)||(7318258-7318343)
chr7 (63-117)||(7397211-7397265)
chr7 (194-272)||(14755018-14755096)
chr7 (31-117)||(17203008-17203093)
chr7 (181-254)||(9500569-9500639)
chr7 (25-82)||(9720941-9720998)
chr7 (64-152)||(2504186-2504274)
chr7 (65-117)||(5108583-5108635)
chr7 (231-275)||(15303490-15303534)
chr7 (32-162)||(18449226-18449357)
chr7 (60-153)||(2953585-2953679)
chr7 (60-153)||(10648590-10648684)
chr7 (183-237)||(16306821-16306874)
chr7 (60-117)||(31492942-31493000)
chr7 (65-117)||(3329687-3329740)
chr7 (70-146)||(9078189-9078265)
[»] chr2 (21 HSPs)
chr2 (31-145)||(8447051-8447165)
chr2 (32-153)||(12557702-12557823)
chr2 (25-162)||(32439981-32440118)
chr2 (60-153)||(25070140-25070233)
chr2 (3-153)||(8503063-8503214)
chr2 (72-258)||(15454732-15454914)
chr2 (51-117)||(17349360-17349426)
chr2 (61-182)||(25936935-25937055)
chr2 (32-144)||(18553909-18554021)
chr2 (71-257)||(27418389-27418570)
chr2 (181-255)||(30900750-30900822)
chr2 (31-117)||(17743505-17743591)
chr2 (225-272)||(45621766-45621813)
chr2 (3-145)||(18932153-18932295)
chr2 (60-117)||(20174664-20174722)
chr2 (60-117)||(29719260-29719318)
chr2 (64-117)||(32085479-32085533)
chr2 (183-264)||(19287455-19287535)
chr2 (168-244)||(28770355-28770431)
chr2 (65-117)||(23011792-23011844)
chr2 (66-117)||(25618574-25618626)
[»] chr3 (22 HSPs)
chr3 (3-258)||(7147944-7148188)
chr3 (34-275)||(23056044-23056283)
chr3 (3-117)||(12805919-12806033)
chr3 (60-185)||(27542881-27543001)
chr3 (25-163)||(21074521-21074659)
chr3 (25-126)||(21019616-21019717)
chr3 (184-255)||(20397713-20397782)
chr3 (65-254)||(8557032-8557211)
chr3 (60-152)||(20339758-20339850)
chr3 (32-163)||(25756659-25756791)
chr3 (3-80)||(932697-932774)
chr3 (194-264)||(6290038-6290107)
chr3 (32-111)||(6289888-6289967)
chr3 (181-264)||(13908145-13908225)
chr3 (60-96)||(18736722-18736758)
chr3 (32-162)||(12759371-12759502)
chr3 (60-114)||(21301930-21301985)
chr3 (60-111)||(21825904-21825955)
chr3 (60-117)||(821543-821601)
chr3 (32-153)||(28728928-28729050)
chr3 (60-113)||(31286048-31286101)
chr3 (193-253)||(821417-821476)
[»] chr8 (20 HSPs)
chr8 (32-181)||(26008007-26008156)
chr8 (65-163)||(15292748-15292846)
chr8 (65-163)||(15473117-15473215)
chr8 (31-264)||(24119651-24119884)
chr8 (65-183)||(28317431-28317555)
chr8 (31-250)||(5850925-5851132)
chr8 (203-273)||(17965189-17965259)
chr8 (65-184)||(14006112-14006226)
chr8 (3-80)||(24110722-24110798)
chr8 (60-117)||(44011053-44011110)
chr8 (32-254)||(14075578-14075791)
chr8 (70-141)||(17972193-17972264)
chr8 (32-163)||(31288342-31288473)
chr8 (195-264)||(5052819-5052886)
chr8 (193-253)||(15238935-15238993)
chr8 (65-117)||(24269615-24269667)
chr8 (60-117)||(29382390-29382448)
chr8 (69-114)||(30122187-30122232)
chr8 (65-117)||(24644855-24644907)
chr8 (60-115)||(30783772-30783828)
[»] chr1 (20 HSPs)
chr1 (32-146)||(26540880-26540994)
chr1 (174-275)||(6501434-6501534)
chr1 (6-144)||(10064573-10064710)
chr1 (181-255)||(24267683-24267756)
chr1 (31-184)||(33712647-33712801)
chr1 (48-117)||(12208601-12208671)
chr1 (60-117)||(17610285-17610343)
chr1 (74-152)||(24306950-24307028)
chr1 (60-117)||(21847646-21847703)
chr1 (60-153)||(25958121-25958214)
chr1 (30-255)||(27117619-27117834)
chr1 (30-153)||(17837500-17837623)
chr1 (62-153)||(24306299-24306390)
chr1 (48-117)||(24281277-24281347)
chr1 (64-117)||(13345365-13345419)
chr1 (60-117)||(16787755-16787813)
chr1 (60-117)||(21449101-21449159)
chr1 (28-117)||(23038041-23038129)
chr1 (48-100)||(22664206-22664259)
chr1 (226-258)||(17017612-17017644)
[»] scaffold0394 (1 HSPs)
scaffold0394 (25-275)||(13789-14029)
[»] chr6 (23 HSPs)
chr6 (30-131)||(20722192-20722292)
chr6 (3-185)||(34478480-34478664)
chr6 (31-264)||(9726006-9726229)
chr6 (169-257)||(28589326-28589412)
chr6 (177-255)||(24188133-24188210)
chr6 (32-153)||(15614171-15614298)
chr6 (3-273)||(28585914-28586174)
chr6 (128-275)||(7542837-7542978)
chr6 (74-185)||(9386070-9386186)
chr6 (3-82)||(8241233-8241311)
chr6 (31-132)||(31629127-31629229)
chr6 (194-255)||(23088236-23088297)
chr6 (66-162)||(9385973-9386069)
chr6 (31-145)||(26215388-26215501)
chr6 (193-254)||(17729288-17729349)
chr6 (32-111)||(25927338-25927417)
chr6 (231-275)||(33655755-33655799)
chr6 (44-114)||(12183363-12183434)
chr6 (60-117)||(9516797-9516855)
chr6 (22-96)||(15466345-15466418)
chr6 (48-100)||(5624640-5624693)
chr6 (60-111)||(21672470-21672522)
chr6 (236-264)||(31626159-31626187)
[»] scaffold0606 (1 HSPs)
scaffold0606 (15-89)||(7843-7917)
[»] scaffold0016 (1 HSPs)
scaffold0016 (31-185)||(12092-12246)
[»] scaffold0006 (2 HSPs)
scaffold0006 (181-255)||(18641-18713)
scaffold0006 (181-264)||(222925-223006)
[»] scaffold0136 (1 HSPs)
scaffold0136 (203-255)||(15367-15419)
[»] scaffold0672 (1 HSPs)
scaffold0672 (193-258)||(1869-1932)
[»] scaffold0085 (1 HSPs)
scaffold0085 (14-131)||(22247-22364)
[»] scaffold0019 (1 HSPs)
scaffold0019 (211-255)||(11377-11421)
[»] scaffold0023 (1 HSPs)
scaffold0023 (60-153)||(115642-115732)
[»] scaffold0056 (1 HSPs)
scaffold0056 (3-44)||(24941-24982)
[»] scaffold0043 (1 HSPs)
scaffold0043 (60-117)||(89883-89940)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 28253234 - 28253508
Alignment:
Q  1 cgaacaatccccgacaacggcgcaaaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttat 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||| |||    
T  28253234 cgaacaatcctcgacaacggcgcaaaaaacttgatggtcggatttatgcaaatgtaccaaatcgtttaccaagtaataaagtgtaagtagaatatcgtat 28253333  T
Q  101 tcacatggattgtcgttccaactaggaaattcgcgttacttatttgagaacaactaaataaaacaataaaataaaagataaagggtttagaggttttgca 200  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28253334 tcacagggattatcgttccaagtaggaaattcgcgttacttatttgagaacaactaaataaaacaataaaataaaagataaagggtttagaggttttgca 28253433  T
Q  201 atttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttagtggtggttaatattcttcga 275  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  28253434 atttaatctatttgcaacggagaaaagtttacctgttttgattgcaaaatgttagtggtggttaatattattcga 28253508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 255
Target Start/End: Original strand, 15544034 - 15544247
Alignment:
Q  31 ttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaat 130  Q
    |||||||||||||||| |||| |||||  ||||||||||||||||||||| | | |||||| |||| ||| || | ||||| |||||| ||||||| |||    
T  15544034 ttgatggtcggatttaggcaagtgtaccaaatcgtttaccaagtaataaactgtcagtagagtatcgtatacatagggattatcgttcaaactaggcaat 15544133  T
Q  131 tcgcgttacttatttgagaacaactaaataaaacaataaaataaaagataaagggtttagaggttttgcaatttaatctatttgcaacggagcaaagttt 230  Q
     |||||||||||||||  |||||  ||||         ||||||||||| |||  |||||| ||||||||||||||| | ||||||||  |||||| |||    
T  15544134 ccgcgttacttatttggaaacaataaaat---------aaataaaagat-aagtatttaga-gttttgcaatttaatttgtttgcaacatagcaaaattt 15544222  T
Q  231 acctgttttgattgcagaatgttag 255  Q
    |||| ||||||||||| ||||||||    
T  15544223 acctattttgattgcaaaatgttag 15544247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 31 - 255
Target Start/End: Original strand, 28142347 - 28142563
Alignment:
Q  31 ttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtt-taagtagaat-atcttattcacatggattgtcgttccaactaggaa 128  Q
    |||||||||| ||||| |||| |||| | ||||||||| ||| |||||||||  |||| ||| | ||| ||||||||||||||||||||||||||| | |    
T  28142347 ttgatggtcgaatttaagcaagtgtattaaatcgtttatcaaataataaagtagtaagcagagttatcgtattcacatggattgtcgttccaactatgca 28142446  T
Q  129 attcgcgttacttatttgagaacaactaaataaaacaataaaataaaagataaagggtttagaggttttgcaatttaatctatttgcaacggagcaaagt 228  Q
    ||| | |||||||||||| ||||||    |||||      ||||||||||||  |||||||||| | ||||||||||||||||||||||| ||| |||||    
T  28142447 atttgtgttacttatttgggaacaat---ataaat-----aaataaaagatat-gggtttagag-tgttgcaatttaatctatttgcaacagagtaaagt 28142536  T
Q  229 ttacctgttttgattgcagaatgttag 255  Q
    | |||||| |||| |||| ||||||||    
T  28142537 tcacctgtcttgactgcataatgttag 28142563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 17769539 - 17769461
Alignment:
Q  3 aacaatccccgacaacggcgcaaaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaag 81  Q
    ||||||| ||||||||||| | ||||| ||||||||||||||||||||| |||||  ||||||||||||||||||||||    
T  17769539 aacaatctccgacaacggcaccaaaaatttgatggtcggatttatgcaagtgtaccaaatcgtttaccaagtaataaag 17769461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 18208369 - 18208281
Alignment:
Q  25 aaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtc 114  Q
    |||||||||||||||||||| | |||| |||||  |||||||||| |||||||||||| |||||||| |||| ||| |||||||||||||    
T  18208369 aaaaacttgatggtcggatt-aggcaagtgtaccaaatcgtttacaaagtaataaagtgtaagtagagtatcgtatccacatggattgtc 18208281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 34487654 - 34487735
Alignment:
Q  64 gtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttattt 145  Q
    ||||||||||||||||||| ||||||||||||| ||| |||||||||||||||| |  |||   ||||||||||||||||||    
T  34487654 gtttaccaagtaataaagtgtaagtagaatatcatatccacatggattgtcgtttcgtctaaacaattcgcgttacttattt 34487735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 264
Target Start/End: Original strand, 26307727 - 26307819
Alignment:
Q  172 taaaagataaagggtttagaggttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttagtggtggtta 264  Q
    |||||||||||||||  |  ||||||||||||| ||||||||||||| ||||||  ||||  |||||||||||||||||||||| || |||||    
T  26307727 taaaagataaagggtaaatgggttttgcaatttgatctatttgcaacagagcaagatttagttgttttgattgcagaatgttagcggcggtta 26307819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 185
Target Start/End: Complemental strand, 23380373 - 23380219
Alignment:
Q  31 ttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtcgttccaactaggaaa 129  Q
    ||||| |||||||||| |||| |||||  ||| ||||||||||||||||| |  |||||| | |||| |||||| |||||||||| || |||| ||  ||    
T  23380373 ttgattgtcggatttaggcaagtgtaccaaattgtttaccaagtaataaactgataagtaaactatcgtattcatatggattgtcatttcaacaagacaa 23380274  T
Q  130 ttcgcgttacttatttgagaacaactaaataaaacaataaaataaaagataaaggg 185  Q
     | ||| |||||||||| |||||| |||| || | |||||||||||||||||||||    
T  23380273 cttgcgctacttatttgggaacaa-taaacaataaaataaaataaaagataaaggg 23380219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 29263553 - 29263463
Alignment:
Q  184 ggtttagaggttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttagtggtggttaatattcttcga 275  Q
    ||||||||| |||||||||||||| | ||||||||  |||||||||||||| ||||||||| | |||||||| ||||||||  |||||||||    
T  29263553 ggtttagag-ttttgcaatttaatatgtttgcaacaaagcaaagtttacctcttttgattgtataatgttagcggtggttaggattcttcga 29263463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 24267097 - 24266990
Alignment:
Q  3 aacaatccccgacaacggcgcaaaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattc 102  Q
    |||||||| || |||| | || |||||||||||||||| ||| | |||| |||||  ||||||||||||||||||||||| |||||||| |||| ||| |    
T  24267097 aacaatcctcggcaacagtgccaaaaacttgatggtcgaatt-aggcaagtgtaccaaatcgtttaccaagtaataaagtgtaagtagagtatcgtatcc 24266999  T
Q  103 acatggatt 111  Q
    ||| |||||    
T  24266998 acaaggatt 24266990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 24343728 - 24343621
Alignment:
Q  3 aacaatccccgacaacggcgcaaaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattc 102  Q
    |||||||| || |||| | || |||||||||||||||| ||| | |||| |||||  ||||||||||||||||||||||| |||||||| |||| ||| |    
T  24343728 aacaatcctcggcaacagtgccaaaaacttgatggtcgaatt-aggcaagtgtaccaaatcgtttaccaagtaataaagtgtaagtagagtatcgtatcc 24343630  T
Q  103 acatggatt 111  Q
    ||| |||||    
T  24343629 acaaggatt 24343621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 32452486 - 32452426
Alignment:
Q  102 cacatggattgtcgttccaactaggaaattcgcgttacttatttgagaacaactaaataaa 162  Q
    |||||||||||||||||||| |||| || |||||||||||||||||||||||  |||||||    
T  32452486 cacatggattgtcgttccaattaggcaactcgcgttacttatttgagaacaataaaataaa 32452426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 264
Target Start/End: Complemental strand, 24852264 - 24852064
Alignment:
Q  55 tactgaatcgtttaccaagtaataaagtt-taagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttatttgagaacaa 153  Q
    |||| ||||| ||||||||||||||| |  |||||| | |||| ||| |||||||||||| ||| |  |||   ||||| ||||||||||||||||||||    
T  24852264 tactaaatcgattaccaagtaataaaatgataagtatagtatcgtatccacatggattgttgtttcgtctaaacaattcacgttacttatttgagaacaa 24852165  T
Q  154 ctaaataaaacaataaaataaaagataaagggtttagaggttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgtt 253  Q
            ||  |||||||||||||||| ||||||| || ||| | || ||||||| |||||||| |||||||||| |||||||||| ||| |||||| |    
T  24852164 --------aattataaaataaaagataa-gggtttaaagttttggaaagttaatctgtttgcaacagagcaaagtt-acctgttttggttgtagaatgat 24852075  T
Q  254 agtggtggtta 264  Q
    ||  |||||||    
T  24852074 agcagtggtta 24852064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 27921519 - 27921403
Alignment:
Q  28 aacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactagga 127  Q
    |||||||||||| |||||| |||| |||||  ||| ||||  ||||||||||||| |||||||  |||| |||  |||||| |||| ||| ||||||||     
T  27921519 aacttgatggtcagatttaggcaagtgtaca-aattgtttgtcaagtaataaagtgtaagtagtgtatcgtatatacatgggttgttgtttcaactaggc 27921421  T
Q  128 aattcgcgttacttattt 145  Q
    ||||| ||||||||||||    
T  27921420 aattcacgttacttattt 27921403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 20744953 - 20744876
Alignment:
Q  4 acaatccccgacaacggcgcaaaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagt 82  Q
    ||||||||||||||| |||| |||| |||||||||||||| |  |||| |||||  |||| ||||||||||||||||||    
T  20744953 acaatccccgacaactgcgctaaaagcttgatggtcggatat-ggcaagtgtaccaaatcatttaccaagtaataaagt 20744876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 26120881 - 26120934
Alignment:
Q  64 gtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgtt 117  Q
    |||||||| ||||||||||||||||||| |||| |||||| | |||||||||||    
T  26120881 gtttaccatgtaataaagtttaagtagagtatcatattcaaaaggattgtcgtt 26120934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 19086153 - 19086071
Alignment:
Q  181 aagggtttagaggttttgcaat-ttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttagtggtggtta 264  Q
    |||||||||||| ||||| ||| ||||| | |||||||| |||||||||| || ||| |||||||||||||||||| ||||||||    
T  19086153 aagggtttagag-ttttggaatgttaatttgtttgcaacagagcaaagtt-acttgtcttgattgcagaatgttagcggtggtta 19086071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 19004325 - 19004258
Alignment:
Q  48 gcaaatgtactgaatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtc 114  Q
    |||| |||||| |||||||||||||||||||||||  ||||| || |||| ||| |||||||||||||    
T  19004325 gcaagtgtactaaatcgtttaccaagtaataaagtgataagtggagtatcgtatccacatggattgtc 19004258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 32581889 - 32581956
Alignment:
Q  50 aaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgtt 117  Q
    ||||||| | ||| ||||| ||||||||||||| ||||| || ||||||||||| | |||||||||||    
T  32581889 aaatgtattaaattgtttagcaagtaataaagtataagttgagtatcttattcataaggattgtcgtt 32581956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 15492787 - 15492749
Alignment:
Q  235 gttttgattgcagaatgttagtggtggttaatattcttc 273  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  15492787 gttttgattgcagaatgttagtggtggttaggattcttc 15492749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 24167671 - 24167613
Alignment:
Q  60 aatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtcgtt 117  Q
    |||||||||||||||||||||||  |||||||| |||| |||  |||||||||||||||    
T  24167671 aatcgtttaccaagtaataaagtagtaagtagagtatcatatatacatggattgtcgtt 24167613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 32417471 - 32417357
Alignment:
Q  31 ttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaat 130  Q
    |||||||||| ||||| | || |||||  ||||||||| ||||||||||||| |||||||| |||  |||  |||||||||  |||| || ||||| |||    
T  32417471 ttgatggtcgaatttaggtaagtgtaccaaatcgtttatcaagtaataaagtgtaagtagagtattatatcgacatggatttacgtttcacctaggcaat 32417372  T
Q  131 tcgcgttacttattt 145  Q
    |   |||||||||||    
T  32417371 ttctgttacttattt 32417357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 32448120 - 32448160
Alignment:
Q  213 tgcaacggagcaaagtttacctgttttgattgcagaatgtta 254  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  32448120 tgcaacggaacaaagtttacct-ttttgattgcagaatgtta 32448160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 41 - 274
Target Start/End: Original strand, 19900573 - 19900795
Alignment:
Q  41 gatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttact 140  Q
    |||||| |||| |||||  ||| ||||||||||||||||||| |||||||| |||| ||||||||  ||||||||||||||||||| ||||| | |||||    
T  19900573 gatttaggcaagtgtaccaaattgtttaccaagtaataaagtgtaagtagagtatcatattcacaaagattgtcgttccaactaggcaattcacattact 19900672  T
Q  141 tatttgagaacaactaaataaaacaataaaataaaagataaagggtttagaggttttgcaatttaatctatttgcaacggagcaaagtttacctgttttg 240  Q
    ||||| | |||||  |||||||         |||||||||| |||||||||| |||||||||||||||| ||||||||  ||||||||||||||||||||    
T  19900673 tatttcataacaataaaataaa---------taaaagataa-gggtttagag-ttttgcaatttaatctgtttgcaacatagcaaagtttacctgttttg 19900761  T
Q  241 attgcagaatgttagtggtggttaatattcttcg 274  Q
    |||||| |||||||| || |||||  ||||||||    
T  19900762 attgcataatgttagcggaggttaggattcttcg 19900795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 275
Target Start/End: Complemental strand, 15050204 - 15049965
Alignment:
Q  25 aaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaacta 124  Q
    |||||||||||||||||||||| |||| ||||   |||| |||||||||||||||||| ||||||||||| | |   ||||||||||||| |||||||||    
T  15050204 aaaaacttgatggtcggatttaggcaagtgtatcaaatcatttaccaagtaataaagtgtaagtagaataccgtgaacacatggattgtcattccaacta 15050105  T
Q  125 ggaaattcgcgttacttatttgagaacaactaaataaaacaataaaataaaagataaagggtttagaggttttgcaatttaatctatttgcaac-ggagc 223  Q
    |  |||| |||||||||||||| |||||| ||           ||||||||||||||| |||  || ||||||||||||| || | |||||| | |||||    
T  15050104 gacaatttgcgttacttatttgggaacaa-ta-----------aaaataaaagataaaaggtaaaggggttttgcaatttgatttgtttgcagcaggagc 15050017  T
Q  224 aaagtttacctgttttgattgcagaatgttagtggtggttaatattcttcga 275  Q
    ||  ||||| ||||||||||  |||||||||| ||||||||  |||||||||    
T  15050016 aagatttacatgttttgattatagaatgttagcggtggttagaattcttcga 15049965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 275
Target Start/End: Original strand, 15104220 - 15104459
Alignment:
Q  25 aaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaacta 124  Q
    |||||||||||||||||||||| |||| ||||   |||| |||||||||||||||||| ||||||||||| | |   ||||||||||||| |||||||||    
T  15104220 aaaaacttgatggtcggatttaggcaagtgtatcaaatcatttaccaagtaataaagtgtaagtagaataccgtgaacacatggattgtcattccaacta 15104319  T
Q  125 ggaaattcgcgttacttatttgagaacaactaaataaaacaataaaataaaagataaagggtttagaggttttgcaatttaatctatttgcaac-ggagc 223  Q
    |  |||| |||||||||||||| |||||| ||           ||||||||||||||| |||  || ||||||||||||| || | |||||| | |||||    
T  15104320 gacaatttgcgttacttatttgggaacaa-ta-----------aaaataaaagataaaaggtaaaggggttttgcaatttgatttgtttgcagcaggagc 15104407  T
Q  224 aaagtttacctgttttgattgcagaatgttagtggtggttaatattcttcga 275  Q
    ||  ||||| ||||||||||  |||||||||| ||||||||  |||||||||    
T  15104408 aagatttacatgttttgattatagaatgttagcggtggttagaattcttcga 15104459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 185
Target Start/End: Complemental strand, 20317893 - 20317743
Alignment:
Q  31 ttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaat 130  Q
    |||||||||||||||| |||| | |||| ||| |||||||| |||||||| | |||||||| |||| |||||||||| |||||||||| |||||| ||||    
T  20317893 ttgatggtcggatttaagcaagtatactaaattgtttaccatgtaataaaatgtaagtagagtatcgtattcacatgaattgtcgttctaactagaaaat 20317794  T
Q  131 tcgcgttacttatttgagaacaactaaataaaac-aataaaataaaagataaaggg 185  Q
    || | ||| ||||||  ||||     |||||||| |||||||||||||||||||||    
T  20317793 tcacattatttatttaggaac-----aataaaacaaataaaataaaagataaaggg 20317743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 152
Target Start/End: Original strand, 22345009 - 22345123
Alignment:
Q  36 ggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcg 135  Q
    ||||||||||| ||||||| ||  |||| |||| ||||||||||||  || ||||| |||| ||| ||||||||||||||||||||   ||||||||| |    
T  22345009 ggtcggatttaggcaaatgcacctaatcatttatcaagtaataaagagtatgtagagtatcgtatccacatggattgtcgttccaa--tggaaattcgtg 22345106  T
Q  136 ttacttatttgagaaca 152  Q
    ||||||||||| |||||    
T  22345107 ttacttatttgggaaca 22345123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 17216773 - 17216887
Alignment:
Q  3 aacaatccccgacaacggcgcaaaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagt-ttaagtagaatatcttatt 101  Q
    |||| |||||| ||||| ||| ||||||||||||||| ||| |  ||||||||||  |||||||||||||| ||||||||  |||||||| |||| |||     
T  17216773 aacattccccggcaacgacgctaaaaacttgatggtcagatatg-gcaaatgtaccaaatcgtttaccaagcaataaagtgataagtagagtatcatatc 17216871  T
Q  102 cacatggattgtcgtt 117  Q
    ||||||||||||||||    
T  17216872 cacatggattgtcgtt 17216887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 264
Target Start/End: Original strand, 20314998 - 20315206
Alignment:
Q  46 atgcaaatgtactgaatcgtttaccaagtaataaagtt-taagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttatt 144  Q
    |||||| |||||  ||||||||||||||||||||| |  ||||||||||||| ||| |||| ||||||||||| |  | |   |||| ||||||||||||    
T  20314998 atgcaagtgtaccaaatcgtttaccaagtaataaattgataagtagaatatcatatccacaaggattgtcgtttcgtccaaacaatttgcgttacttatt 20315097  T
Q  145 tgagaacaactaaataaaacaataaaataaaagata-aagggtttagaggttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgatt 243  Q
    |||||||||           ||||| |||||||||| ||| |||||||| |||   |  ||||| | ||| ||||| ||||||||| |||||||||||||    
T  20315098 tgagaacaa-----------aataatataaaagatataagagtttagagatttgtaacattaatatgtttacaacgaagcaaagtt-acctgttttgatt 20315185  T
Q  244 gcagaatgttagtggtggtta 264  Q
    ||||||||||||||| |||||    
T  20315186 gcagaatgttagtggcggtta 20315206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 255
Target Start/End: Complemental strand, 40215400 - 40215221
Alignment:
Q  64 gtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttatttgagaacaactaaataaaa 163  Q
    ||||||||| |||||||||||||||||| |||| ||| ||||  ||| |  |||||||||||| ||||| | ||||||||||| |||||  ||||         
T  40215400 gtttaccaaataataaagtttaagtagattatcgtatccacaaagatagatgttccaactaggcaattcacattacttatttgggaacagttaaa----- 40215306  T
Q  164 caataaaataaaagataaagggtttagaggttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttag 255  Q
           ||||||||||||| ||| |    ||||||||||| |||| |||||||| |||||| || |||||||||| |||||||||||||||    
T  40215305 -------ataaaagataaagagttaaagaattttgcaatttgatctgtttgcaacagagcaaggtatacctgttttaattgcagaatgttag 40215221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 13129016 - 13128941
Alignment:
Q  4 acaatccccgacaacggcgcaaaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaa 80  Q
    |||||||||||||||||||| |||||||||||| || || ||| |||| |||||  |||||||||||||||||||||    
T  13129016 acaatccccgacaacggcgctaaaaacttgatgttc-gaattaggcaagtgtaccaaatcgtttaccaagtaataaa 13128941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 23080378 - 23080447
Alignment:
Q  84 taagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttatttgagaacaa 153  Q
    ||||||||||||  |||||||||||||||||||| |||| |   |||| |||||||||||||||||||||    
T  23080378 taagtagaatattgtattcacatggattgtcgtttcaaccaaacaatttgcgttacttatttgagaacaa 23080447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 264
Target Start/End: Complemental strand, 9737497 - 9737402
Alignment:
Q  169 aaataaaagata-aagggtttagaggttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttagtggtggtta 264  Q
    |||||||||| | |||||||||||  |||||||||||||||| |||| | | ||||||| |||||  ||||||||||||||||||||| || |||||    
T  9737497 aaataaaagagataagggtttagat-ttttgcaatttaatctgtttgtaccagagcaaattttacacgttttgattgcagaatgttagcggcggtta 9737402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 21324007 - 21323904
Alignment:
Q  14 acaacggcgcaaaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattg 112  Q
    |||| ||||| |||||||||||||||||| ||| |||| |||||| ||||||||||||| |||||| ||  | |||||| |||| ||| ||||| |||||    
T  21324007 acaatggcgccaaaaacttgatggtcgga-ttaggcaagtgtactaaatcgtttaccaaataataatgtgatcagtagagtatcgtatccacatagattg 21323909  T
Q  113 tcgtt 117  Q
    |||||    
T  21323908 tcgtt 21323904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 212
Target Start/End: Original strand, 25643468 - 25643620
Alignment:
Q  53 tgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttatttgagaaca 152  Q
    |||||| ||||||||  ||||||||||||| ||| |||| |||| ||| |||| || ||||| || ||| |||| ||||  ||||||||||||| |||||    
T  25643468 tgtactaaatcgtttgtcaagtaataaagtgtaactagagtatcgtatccacaggggttgtcatttcaattaggcaatttacgttacttatttgggaaca 25643567  T
Q  153 actaaataaaacaataaaataaaagataaagggtttagaggttttgcaatttaatctatt 212  Q
    | |||| || | ||| |||||||||||||| |     | |||||||||||||||||||||    
T  25643568 a-taaacaata-aattaaataaaagataaaag-----gcggttttgcaatttaatctatt 25643620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 1833560 - 1833498
Alignment:
Q  193 gttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttag 255  Q
    |||| |||||||||||| |||| ||  | ||||||||| ||||||||||||||||||||||||    
T  1833560 gtttcgcaatttaatctgtttgtaatagcgcaaagttttcctgttttgattgcagaatgttag 1833498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 13692756 - 13692698
Alignment:
Q  60 aatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtcgtt 117  Q
    |||||||||||||||||||||||  |||||||| |||| ||| ||||||||||||||||    
T  13692756 aatcgtttaccaagtaataaagtgataagtagagtatcatatccacatggattgtcgtt 13692698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 264
Target Start/End: Complemental strand, 11700534 - 11700466
Alignment:
Q  195 tttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttagtggtggtta 264  Q
    ||||||||||||| | |||||||| |||||| |||| ||| |||||||||||||||||||| || |||||    
T  11700534 tttgcaatttaatatgtttgcaacagagcaa-gtttgcctattttgattgcagaatgttagcggcggtta 11700466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 13587208 - 13587265
Alignment:
Q  25 aaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagt 82  Q
    |||||||||||| || ||||||||||| |||||  ||||||||||||| |||||||||    
T  13587208 aaaaacttgatgatcagatttatgcaagtgtaccaaatcgtttaccaaataataaagt 13587265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 22218683 - 22218594
Alignment:
Q  64 gtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttatttgagaacaa 153  Q
    ||||| ||||||||||||| |||||||| |||| ||| || |  |||||| ||||||||||| ||||| || ||| ||||||| ||||||    
T  22218683 gtttatcaagtaataaagtgtaagtagagtatcgtatccataaagattgttgttccaactagaaaatttgcattatttatttgggaacaa 22218594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 15164723 - 15164796
Alignment:
Q  3 aacaatccccgacaacggcgcaaaaaacttgatggtcggatttatg-caaatgtactgaatcgtttaccaagtaat 77  Q
    ||||||||||| |||| |||| ||||||||||||||||||  |||| ||| |||||  ||||||||||||||||||    
T  15164723 aacaatccccggcaacagcgctaaaaacttgatggtcgga--tatgacaagtgtaccaaatcgtttaccaagtaat 15164796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 23080496 - 23080544
Alignment:
Q  224 aaagtttacctgttttgattgcagaatgttagtggtggttaatattctt 272  Q
    ||||||||||| |||||||||||||||||||| || |||||| ||||||    
T  23080496 aaagtttacctattttgattgcagaatgttagcggcggttaagattctt 23080544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 19492815 - 19492701
Alignment:
Q  31 ttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaa-gtttaagtagaatatcttattcacatggattgtcgttccaactaggaaa 129  Q
    ||||||||||||| ||| ||| |||||  ||||||||||||||||||||| |  |||||||| |||| ||| |||| | ||||||||| || | |   ||    
T  19492815 ttgatggtcggatatat-caagtgtaccaaatcgtttaccaagtaataaagggataagtagagtatcgtatccacaagaattgtcgtttcatccaaacaa 19492717  T
Q  130 ttcgcgttacttattt 145  Q
    ||||||||||||||||    
T  19492716 ttcgcgttacttattt 19492701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 13908866 - 13908924
Alignment:
Q  60 aatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtcgtt 117  Q
    |||||||||||||||||||||||  |||||||| |||| ||| |||| |||||||||||    
T  13908866 aatcgtttaccaagtaataaagtgataagtagagtatcgtatccacaaggattgtcgtt 13908924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 25121312 - 25121226
Alignment:
Q  60 aatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttatttg 146  Q
    ||||||||||||||||||||||| |||||| | |||| ||| |||| ||||||| ||| |  | |   |||||||||||||||||||    
T  25121312 aatcgtttaccaagtaataaagtgtaagtatagtatcgtatccacaaggattgtggtttcgtccaaacaattcgcgttacttatttg 25121226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 10106995 - 10107080
Alignment:
Q  32 tgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgtt 117  Q
    ||||||||||||||| |||| ||||   ||||||||||||||||||||| |  ||||||| |||  ||| || | |||||||||||    
T  10106995 tgatggtcggatttaggcaagtgtagcaaatcgtttaccaagtaataaattgcaagtagagtattctatccatagggattgtcgtt 10107080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 22526530 - 22526571
Alignment:
Q  223 caaagtttacctgttttgattgcagaatgttagtggtggtta 264  Q
    |||||||||||||||||||||||| |||||||| || |||||    
T  22526530 caaagtttacctgttttgattgcataatgttagcggcggtta 22526571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 264
Target Start/End: Complemental strand, 11521118 - 11521086
Alignment:
Q  232 cctgttttgattgcagaatgttagtggtggtta 264  Q
    |||||||||||||||||||||||| ||||||||    
T  11521118 cctgttttgattgcagaatgttagcggtggtta 11521086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 9e-36; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 3 - 275
Target Start/End: Original strand, 20174527 - 20174798
Alignment:
Q  3 aacaatccccgacaacggcgcaaaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattc 102  Q
    ||||||||||||||| || || |||||||||| | | |||||||  ||| | |||  |||||||||| | |||||||||| ||| |||| ||||  |||     
T  20174527 aacaatccccgacaatggagccaaaaacttgacgtttggatttagacaagtataccaaatcgtttactaggtaataaagtgtaactagagtatcgcatta 20174626  T
Q  103 acatggattgtcgttccaactaggaaattcgcgttacttatttgagaacaactaaataaaacaataaaataaaagataaagggtttagaggttttgcaat 202  Q
    ||||||||| |||||| ||| |||||| |||||||||||||||| |||||  ||||  ||| ||  |||| |||||||||||||  || | |||||||||    
T  20174627 acatggattttcgttctaacgaggaaactcgcgttacttatttgggaacatttaaaataaataaacaaat-aaagataaagggtaaagggtttttgcaat 20174725  T
Q  203 ttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttagtggtggttaatattcttcga 275  Q
    || |||| | |||||| || |||  ||||||||||||||||| |||||||||||||| ||||  |||||||||    
T  20174726 ttgatctgtatgcaacagaccaagatttacctgttttgattgtagaatgttagtggtcgttaggattcttcga 20174798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 2563777 - 2563887
Alignment:
Q  6 aatccccgacaacggcgcaaaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcaca 105  Q
    |||||||||||||||||| ||||||||||||  |||||| |||||| |||||  ||||||||||||||||||||||| |||||||| |||| ||| ||||    
T  2563777 aatccccgacaacggcgccaaaaacttgatgtgcggatt-atgcaagtgtaccaaatcgtttaccaagtaataaagtgtaagtagagtatcgtatccaca 2563875  T
Q  106 tggattgtcgtt 117  Q
     |||||||||||    
T  2563876 aggattgtcgtt 2563887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 32 - 214
Target Start/End: Original strand, 23093294 - 23093481
Alignment:
Q  32 tgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaatt 131  Q
    ||||||||  ||||| |||| |||||  |||||||||| |||||||||||| |||||||| |||  |||  || |||||||||||| |||||||| ||||    
T  23093294 tgatggtcatatttaggcaagtgtaccaaatcgtttactaagtaataaagtgtaagtagagtattgtatctacgtggattgtcgtttcaactaggcaatt 23093393  T
Q  132 cgcgttacttatttgagaac----aactaaataaaacaa-taaaataaaagataaagggtttagaggttttgcaatttaatctatttg 214  Q
    |   ||||||||||| ||||    || |||||||||||| |||||||||||||||| ||| |||  ||||||||||||||||| ||||    
T  23093394 caatttacttatttgggaacaagaaaataaataaaacaattaaaataaaagataaaaggtataggagttttgcaatttaatctgtttg 23093481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 165 - 255
Target Start/End: Original strand, 5797618 - 5797708
Alignment:
Q  165 aataaaataaaagata-aagggtttagaggttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttag 255  Q
    |||||||||||||| | |||||||||||  |||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5797618 aataaaataaaagagataagggtttagatttttt-caagttaatctatttgcaacagagcaaagtttacctgttttgattgcagaatgttag 5797708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 60 - 171
Target Start/End: Complemental strand, 15303707 - 15303596
Alignment:
Q  60 aatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttatttgagaacaactaaat 159  Q
    |||||||||||| |||||||||| |||||| | |||| |||  ||| | |||||||||||||||||||||||| ||||||||||||||||||||  ||||    
T  15303707 aatcgtttaccaggtaataaagtgtaagtaaagtatcgtatctacacgaattgtcgttccaactaggaaattcacgttacttatttgagaacaataaaat 15303608  T
Q  160 aaaacaataaaa 171  Q
    |||  |||||||    
T  15303607 aaagaaataaaa 15303596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 152
Target Start/End: Original strand, 2453717 - 2453837
Alignment:
Q  32 tgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaatt 131  Q
    ||||||| ||||||| |||| |||| | ||| ||||| ||||||||||| |||||||||| |||| ||||||||| |||| | |||||||||||  ||||    
T  2453717 tgatggttggatttaggcaagtgtattaaattgtttatcaagtaataaaatttaagtagagtatcgtattcacatagattattgttccaactagacaatt 2453816  T
Q  132 cgcgttacttatttgagaaca 152  Q
    || |||||||||||| |||||    
T  2453817 cgtgttacttatttgggaaca 2453837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 31 - 254
Target Start/End: Original strand, 10937585 - 10937798
Alignment:
Q  31 ttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtcgttccaactaggaaa 129  Q
    |||||||| ||||||| |||| ||||   |||||||||||||||||||||||  |||||| | |||| ||| |||||||||||||||| |||  |   ||    
T  10937585 ttgatggttggatttaggcaagtgtatcaaatcgtttaccaagtaataaagtgataagtatagtatcgtatccacatggattgtcgtttcaatcaaacaa 10937684  T
Q  130 ttcgcgttacttatttgagaacaactaaataaaacaataaaataaaagataaagggtttagaggttttgcaatttaatctatttgcaacggagcaaagtt 229  Q
    ||| | |||||||||||||||||||       || ||||||   |||||| ||||||||||| |||||| |||||||| | |||||| | ||||||||||    
T  10937685 ttcacattacttatttgagaacaac-------aaaaataaa--taaagat-aagggtttaga-gttttgtaatttaatttgtttgcagcagagcaaagtt 10937773  T
Q  230 tacctgttttgattgcagaatgtta 254  Q
    || |||||||||||| |||||||||    
T  10937774 tatctgttttgattggagaatgtta 10937798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 182
Target Start/End: Original strand, 33035456 - 33035608
Alignment:
Q  31 ttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtt-taagtagaatatcttattcacatggattgtcgttccaactaggaaa 129  Q
    |||||||||||||||| |||| ||||   |||||||||||| ||||||||||  || ||||| ||||  ||  || ||| ||||||| ||||||||| ||    
T  33035456 ttgatggtcggatttaggcaagtgtatcaaatcgtttacca-gtaataaagtgataggtagagtatcgcatctacgtggcttgtcgtaccaactaggcaa 33035554  T
Q  130 ttcgcgttacttatttgagaacaactaaat-aaaacaataaaataaaagataaa 182  Q
    ||| | ||||||||||||||||||  |||| |||||||||||||||||||||||    
T  33035555 ttcacattacttatttgagaacaagaaaataaaaacaataaaataaaagataaa 33035608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 5047517 - 5047437
Alignment:
Q  16 aacggcgcaaaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatc 96  Q
    |||||||| |||||||||||||||||||||| |||| |||||  |||| |||||||||||||||||| |||||||| ||||    
T  5047517 aacggcgccaaaaacttgatggtcggatttaggcaagtgtaccaaatcatttaccaagtaataaagtgtaagtagattatc 5047437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 165 - 255
Target Start/End: Complemental strand, 21912472 - 21912381
Alignment:
Q  165 aataaaataaaagata-aagggtttagaggttttgcaat-ttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttag 255  Q
    ||||||||||| || | |||||||||||| ||||||||  |||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  21912472 aataaaataaatgagataagggtttagag-ttttgcaaagttaatctatttgcaacagagcaaagtttacatgttttgattgcagaatgttag 21912381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 250
Target Start/End: Complemental strand, 9864438 - 9864233
Alignment:
Q  34 atggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtt-taagtagaatatcttattcacatggattgtcgttccaactaggaaattc 132  Q
    ||||||||||| | |||| |||||  ||| |||||||||||||||||||  |||||||| |||| ||| |||| ||||||||||| |  |||   ||||     
T  9864438 atggtcggatt-aggcaagtgtaccaaattgtttaccaagtaataaagtgataagtagagtatcatatccacaaggattgtcgtttcgtctaaacaattt 9864340  T
Q  133 gcgttacttatttgagaacaactaaataaaacaataaaataaaagataaagggtttagaggttttgcaatttaatctatttgcaacggagcaaagtttac 232  Q
    |||||||||||||||||||||  ||||| |    ||||     |||||| |||||||||| |||||||||||| ||| ||||||||  ||||||||| ||    
T  9864339 gcgttacttatttgagaacaataaaatata----taaag----agataa-gggtttagag-ttttgcaatttactctgtttgcaacaaagcaaagtt-ac 9864251  T
Q  233 ctgttttgattgcagaat 250  Q
    ||||||||||||||||||    
T  9864250 ctgttttgattgcagaat 9864233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 18449671 - 18449728
Alignment:
Q  193 gttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaat 250  Q
    ||||| |||||||||||||||||||| || ||| ||||||||||||||||||||||||    
T  18449671 gtttttcaatttaatctatttgcaacagatcaatgtttacctgttttgattgcagaat 18449728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 18466129 - 18466201
Alignment:
Q  181 aagggtttagaggttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgtta 254  Q
    |||||||||||| |||||||||||||| |||||||||| || |||||||||||| |||| |||||| |||||||    
T  18466129 aagggtttagag-ttttgcaatttaatttatttgcaacagatcaaagtttacctattttaattgcaaaatgtta 18466201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 9866657 - 9866541
Alignment:
Q  30 cttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaa 129  Q
    |||||||||  |||||| |||| |||||  ||| ||||||||| ||||||||| |||||||| |||| ||| ||||   |||||||||| ||||||  ||    
T  9866657 cttgatggtgagatttacgcaagtgtaccaaattgtttaccaaataataaagtgtaagtagagtatcatatccacaataattgtcgttctaactagacaa 9866558  T
Q  130 ttcgcgttacttatttg 146  Q
    ||| |||||||||||||    
T  9866557 ttcacgttacttatttg 9866541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 145
Target Start/End: Original strand, 21227161 - 21227277
Alignment:
Q  31 ttgatggtcggatttatgcaaa-tgtactgaatcgtttaccaagtaataaagtt-taagtagaatatcttattcacatggattgtcgttccaactaggaa 128  Q
    |||||||| ||||||| ||||| |||||  |||| ||||| ||||||||||||  |||||||| |||| |||  ||||| ||| |||||| ||||||| |    
T  21227161 ttgatggttggatttaggcaaaatgtaccaaatcatttacaaagtaataaagtgataagtagagtatcgtatctacatgaattctcgttctaactaggca 21227260  T
Q  129 attcgcgttacttattt 145  Q
    |||||||||||||||||    
T  21227261 attcgcgttacttattt 21227277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 26134862 - 26134750
Alignment:
Q  32 tgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaatt 131  Q
    ||||||| |||||||  ||| |||||  ||||||||||||||||||||| | |||||||| |||| ||| ||||| || |||| || |||||||  ||||    
T  26134862 tgatggttggatttagacaagtgtaccaaatcgtttaccaagtaataaaatgtaagtagagtatcgtatccacatagactgtcatttcaactagacaatt 26134763  T
Q  132 cgcgttacttatt 144  Q
    | |||||||||||    
T  26134762 cacgttacttatt 26134750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 9890167 - 9890260
Alignment:
Q  32 tgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtcgttccaacta 124  Q
    ||||||||||||||| |||| |||||| ||||||||||| |||||||||||  |||||||| |||| |||   || |||| |||||||||||||    
T  9890167 tgatggtcggatttaagcaagtgtactaaatcgtttaccgagtaataaagtagtaagtagagtatcgtatctgcaaggatagtcgttccaacta 9890260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 9916544 - 9916641
Alignment:
Q  26 aaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtcgttccaac 122  Q
    ||||||||||||||||||||| |||| | |||  |||| ||||||| ||||||||||  |||||||| |||| ||| |||||||||||| ||| ||||    
T  9916544 aaaacttgatggtcggatttaggcaagtataccaaatcatttaccacgtaataaagtaataagtagagtatcgtatccacatggattgtagtttcaac 9916641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 9924456 - 9924553
Alignment:
Q  26 aaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtcgttccaac 122  Q
    ||||||||||||||||||||| |||| | |||  |||| ||||||| ||||||||||  |||||||| |||| ||| |||||||||||| ||| ||||    
T  9924456 aaaacttgatggtcggatttaggcaagtataccaaatcatttaccacgtaataaagtaataagtagagtatcgtatccacatggattgtagtttcaac 9924553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 258
Target Start/End: Complemental strand, 36117511 - 36117446
Alignment:
Q  193 gttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttagtgg 258  Q
    ||||||||||||||| | |||||||| || |||||||||| | ||||| |||||||||||||||||    
T  36117511 gttttgcaatttaatttgtttgcaacagaacaaagtttacttattttgtttgcagaatgttagtgg 36117446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 264
Target Start/End: Complemental strand, 21885148 - 21885048
Alignment:
Q  165 aataaaataaaagata-aagggtttagaggttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttagtggtggtt 263  Q
    |||||||||||||| | |||||||||||| ||||  || || | || |||||||| |||||||||| ||| ||| ||||||||| ||||||| |||||||    
T  21885148 aataaaataaaagagataagggtttagagtttttcaaagttgacctgtttgcaacagagcaaagttgaccagttctgattgcagcatgttagcggtggtt 21885049  T
Q  264 a 264  Q
    |    
T  21885048 a 21885048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 1587637 - 1587715
Alignment:
Q  3 aacaatccccgacaacggcgcaaaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagt 82  Q
    ||||||| ||| ||||||| | |||||||||||||||||| ||| ||||||||||  |||||||||| ||||| ||||||    
T  1587637 aacaatctccggcaacggcaccaaaaacttgatggtcgga-ttaggcaaatgtaccaaatcgtttactaagtagtaaagt 1587715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 16365673 - 16365775
Alignment:
Q  15 caacggcgcaaaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgt 113  Q
    ||||||||| ||||||||||| |||||||| |   || |||||  |||||||||||||||||||||||   ||||||| |||| ||| ||||||||||||    
T  16365673 caacggcgctaaaaacttgatagtcggatt-agaaaagtgtaccaaatcgtttaccaagtaataaagtaaaaagtagagtatcgtatccacatggattgt 16365771  T
Q  114 cgtt 117  Q
    ||||    
T  16365772 cgtt 16365775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 7318258 - 7318343
Alignment:
Q  32 tgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtcgtt 117  Q
    ||||||||||||| | |||| |||||   ||||||||||||||||||||||  |||||||| |||| ||| ||||||||||||||||    
T  7318258 tgatggtcggatt-aggcaagtgtaccatatcgtttaccaagtaataaagtgataagtagagtatcgtatccacatggattgtcgtt 7318343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 7397211 - 7397265
Alignment:
Q  63 cgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgtt 117  Q
    |||||||||||||||||||| ||| |||| |||| ||| ||||||||||||||||    
T  7397211 cgtttaccaagtaataaagtgtaactagagtatcgtatccacatggattgtcgtt 7397265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 272
Target Start/End: Complemental strand, 14755096 - 14755018
Alignment:
Q  194 ttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttagtggtggttaatattctt 272  Q
    ||||| |||||||| | ||||||   ||||||||||| ||| ||||||||||||||||||| ||| |||||| ||||||    
T  14755096 ttttgaaatttaatttgtttgcagtagagcaaagtttccctattttgattgcagaatgttaatggcggttaagattctt 14755018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 17203008 - 17203093
Alignment:
Q  31 ttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgtt 117  Q
    |||||||||||||| | ||||||||| | ||| |||||  |||||||||||| |||||||| |||| |||||||  |||||||||||    
T  17203008 ttgatggtcggatt-aggcaaatgtattaaattgtttatgaagtaataaagtataagtagagtatcgtattcacggggattgtcgtt 17203093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 9500569 - 9500639
Alignment:
Q  181 aagggtttagaggttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgtta 254  Q
    |||||||||||| |||| |||||||||||||||||||| |||||||| |||| || |||||||||| |||||||    
T  9500569 aagggtttagagttttt-caatttaatctatttgcaacagagcaaag-ttacatg-tttgattgcaaaatgtta 9500639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 9720941 - 9720998
Alignment:
Q  25 aaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagt 82  Q
    |||||||||||| || ||||||||||| |||||  ||||||||||||| |||||||||    
T  9720941 aaaaacttgatgatcagatttatgcaagtgtaccaaatcgtttaccaaataataaagt 9720998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 152
Target Start/End: Original strand, 2504186 - 2504274
Alignment:
Q  64 gtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttatttgagaaca 152  Q
    ||||||||||||||||||| || ||| | |||| |||  ||||||||||| |||||||  |||||| || |||||||| |||| |||||    
T  2504186 gtttaccaagtaataaagtgtaggtatattatcgtatctacatggattgttgttccaatgaggaaactcacgttacttttttgggaaca 2504274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 5108583 - 5108635
Alignment:
Q  65 tttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgtt 117  Q
    |||||||||||||||||| |||||||| |||| ||| |||| |||||||||||    
T  5108583 tttaccaagtaataaagtgtaagtagagtatcgtatccacaaggattgtcgtt 5108635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 15303534 - 15303490
Alignment:
Q  231 acctgttttgattgcagaatgttagtggtggttaatattcttcga 275  Q
    |||||||||||||||||||||||||||| |||||  |||||||||    
T  15303534 acctgttttgattgcagaatgttagtggcggttatgattcttcga 15303490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 162
Target Start/End: Original strand, 18449226 - 18449357
Alignment:
Q  32 tgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtcgttccaactaggaaat 130  Q
    ||||||||||||||| |||| ||||   ||| |||||||||||||||||||   ||||| |||||| ||| || | ||||||||||| || | |   |||    
T  18449226 tgatggtcggatttaggcaagtgtatcaaattgtttaccaagtaataaagtgagaagtataatatcgtatccatagggattgtcgtttcagccaaacaat 18449325  T
Q  131 tcgcgttacttatttgagaacaactaaataaa 162  Q
    | |||||||||||||| ||||||  |||||||    
T  18449326 tggcgttacttatttgggaacaataaaataaa 18449357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 2953585 - 2953679
Alignment:
Q  60 aatcgtttaccaagtaataaagtttaagtagaatatcttattcaca-tggattgtcgttccaactaggaaattcgcgttacttatttgagaacaa 153  Q
    ||||||||| ||| ||||||||| |||||||| |||| ||| || | |  |||||||||||||||||   || |||||||||||||| |||||||    
T  2953585 aatcgtttatcaaataataaagtgtaagtagagtatcgtatccaaagtatattgtcgttccaactagagtatccgcgttacttatttaagaacaa 2953679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 10648590 - 10648684
Alignment:
Q  60 aatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttatttgagaacaa 153  Q
    |||||||||||||||||||||||  ||| |||| |||| ||| | || ||||||||||| || |||   |||||| ||||||||||| |||||||    
T  10648590 aatcgtttaccaagtaataaagtgataaatagagtatcatatgcgcacggattgtcgtttcatctaaacaattcgtgttacttattttagaacaa 10648684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 16306821 - 16306874
Alignment:
Q  183 gggtttagaggttttgcaatttaatctatttgcaacggagcaaagtttacctgtt 237  Q
    |||||||||| ||||| |||||||| ||||| |||| ||||||||||||||||||    
T  16306821 gggtttagag-ttttgaaatttaatatatttacaacagagcaaagtttacctgtt 16306874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 31492942 - 31493000
Alignment:
Q  60 aatcgtttaccaagtaataaagtt-taagtagaatatcttattcacatggattgtcgtt 117  Q
    |||||||||||| ||||||||||  |||||||| |||| ||| ||||||||||||||||    
T  31492942 aatcgtttaccaggtaataaagtgataagtagagtatcgtatccacatggattgtcgtt 31493000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 3329740 - 3329687
Alignment:
Q  65 tttaccaagtaataaagtt-taagtagaatatcttattcacatggattgtcgtt 117  Q
    ||||||||||||||||||  |||||||| |||| ||| ||||||||||||||||    
T  3329740 tttaccaagtaataaagtgataagtagagtatcgtatccacatggattgtcgtt 3329687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 9078189 - 9078265
Alignment:
Q  70 caagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttatttg 146  Q
    ||||||||| | | |||||||| |||| ||| |||| ||||| |||||| ||||| | |||| ||||||||||||||    
T  9078189 caagtaatagaatgtaagtagattatcgtatccacagggattatcgttcaaactaagcaatttgcgttacttatttg 9078265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 8447165 - 8447051
Alignment:
Q  31 ttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaat 130  Q
    |||||||||| ||||| |||| |||||  ||||||||||||||||||||||| |||||||| |||| ||| ||||||||||||||||||||||||  ||     
T  8447165 ttgatggtcgaatttaggcaagtgtaccaaatcgtttaccaagtaataaagtataagtagattatcgtatccacatggattgtcgttccaactagacaac 8447066  T
Q  131 tcgcgttacttattt 145  Q
    |||||||||||||||    
T  8447065 tcgcgttacttattt 8447051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 153
Target Start/End: Complemental strand, 12557823 - 12557702
Alignment:
Q  32 tgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaatt 131  Q
    ||||||||||||||| |||| |||||  |||| |||||||||||||||||| |||||||||||||  || |||| |||||| |||| ||| |||| ||||    
T  12557823 tgatggtcggatttaggcaagtgtaccaaatcttttaccaagtaataaagtgtaagtagaatatcgaatccacaaggattgccgtttcaattaggcaatt 12557724  T
Q  132 cgcgttacttatttgagaacaa 153  Q
     | |||||||| ||| ||||||    
T  12557723 tgtgttacttacttgggaacaa 12557702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 32440118 - 32439981
Alignment:
Q  25 aaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaacta 124  Q
    |||||||||||||||||||| |||||| |||||  ||| |||||||||| |||||||| ||| || | |||| ||| |||  ||||| ||||| ||| ||    
T  32440118 aaaaacttgatggtcggattcatgcaagtgtaccaaattgtttaccaagaaataaagtgtaaataaagtatcgtatccacgaggattatcgtttcaatta 32440019  T
Q  125 ggaaattcgcgttacttatttgagaacaactaaataaa 162  Q
    || |||| | |||||||||||||||||||  |||||||    
T  32440018 ggcaatttgtgttacttatttgagaacaagaaaataaa 32439981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 25070140 - 25070233
Alignment:
Q  60 aatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttatttgagaacaa 153  Q
    ||||||||| ||| ||||||||| |||||||| ||||  || |||| |||||||||||||||||||  ||||| ||||||||||||| ||||||    
T  25070140 aatcgtttatcaaataataaagtgtaagtagagtatcgcatccacaaggattgtcgttccaactagacaattcacgttacttatttgggaacaa 25070233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 153
Target Start/End: Complemental strand, 8503214 - 8503063
Alignment:
Q  3 aacaatccccgacaacggcgcaaaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagt-ttaagtagaatatcttatt 101  Q
    ||||||||||  |||||||||  ||||| ||||||||| ||||| |||| |||||  |||||||||||||||||||| ||  ||||||||  ||| |||     
T  8503214 aacaatccccagcaacggcgcccaaaacatgatggtcgtatttaggcaagtgtaccaaatcgtttaccaagtaataacgtgataagtagaggatcatatc 8503115  T
Q  102 cacatggattgtcgttccaactaggaaattcgcgttacttatttgagaacaa 153  Q
    ||||||||||||| || |||| |   |||| |||||||| ||||| ||||||    
T  8503114 cacatggattgtcatttcaaccaaacaatttgcgttactaatttgggaacaa 8503063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 72 - 258
Target Start/End: Original strand, 15454732 - 15454914
Alignment:
Q  72 agtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttatttgagaacaactaaataaaacaataaaa 171  Q
    ||||||||||| |||||||| |||| ||| ||    ||||||| ||||||||||| |||||  ||||||||||||  ||| | |||||||||    ||||    
T  15454732 agtaataaagtgtaagtagagtatcatatccatcgagattgtcattccaactaggcaattcatgttacttatttggaaactattaaataaaa----aaaa 15454827  T
Q  172 taaaagataaagggtttagaggttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttagtgg 258  Q
     || | |||||||||  |  ||||||||| ||| |||| ||||||||  ||||| |||||| ||||| ||||| |||||||||||||    
T  15454828 aaatatataaagggtaaaagggttttgcagtttgatctgtttgcaacaaagcaaggtttacttgtttagattggagaatgttagtgg 15454914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 17349360 - 17349426
Alignment:
Q  51 aatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgtt 117  Q
    |||||||| ||||||||||||||||||||||| |||||||| |||| ||| ||||  ||||||||||    
T  17349360 aatgtactaaatcgtttaccaagtaataaagtgtaagtagagtatcgtatccacaaagattgtcgtt 17349426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 25936935 - 25937055
Alignment:
Q  61 atcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttatttgagaacaactaaata 160  Q
    ||||||||  |||||||||||| ||||||||  ||| ||| |||||| ||  | |||||||||||| |||| | |||||||||||  |||||| |||| |    
T  25936935 atcgtttattaagtaataaagtgtaagtagagaatcatatccacatgtatgattgttccaactaggcaatttgtgttacttatttaggaacaa-taaaca 25937033  T
Q  161 aaacaataaaataaaagataaa 182  Q
    | | ||||||||||||||||||    
T  25937034 ataaaataaaataaaagataaa 25937055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 18554021 - 18553909
Alignment:
Q  32 tgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaatt 131  Q
    ||||||||||||||| |||| |||||  ||| | ||| |||||| |||||| ||| |||| |||| |||  ||| |||||||| ||||||||||  ||||    
T  18554021 tgatggtcggatttaggcaagtgtacaaaattggttatcaagtagtaaagtataattagagtatcatatctacagggattgtcattccaactagacaatt 18553922  T
Q  132 cgcgttacttatt 144  Q
    | |||||||||||    
T  18553921 cacgttacttatt 18553909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 257
Target Start/End: Original strand, 27418389 - 27418570
Alignment:
Q  71 aagtaataaagtt-taagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttatttgagaacaactaaataaaacaataa 169  Q
    ||||||||||||  |||||||| |||| ||| |||||||||| || || |||| |   |||||| |||||||||||  ||||||   |||||||   |||    
T  27418389 aagtaataaagtgataagtagagtatcatatccacatggattatcatttcaaccaaacaattcgtgttacttattttggaacaa---aataaaa---taa 27418482  T
Q  170 aataaaagata-aagggtttagaggttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttagtg 257  Q
    | ||||||| | |||||||||||  |||| ||||||||||| |||| ||| | |||||| |||||| ||||||||||||| ||||||||    
T  27418483 attaaaagagataagggtttagaattttt-caatttaatctgtttggaacagcgcaaagcttacctattttgattgcagactgttagtg 27418570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 30900822 - 30900750
Alignment:
Q  181 aagggtttagaggttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttag 255  Q
    |||||||||||| |||||||||||||||||||| |||| |||||||  | ||||| |||||||||||||| ||||    
T  30900822 aagggtttagag-ttttgcaatttaatctatttacaacagagcaaaagtcacctg-tttgattgcagaatattag 30900750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 17743591 - 17743505
Alignment:
Q  31 ttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtcgtt 117  Q
    ||||||||||||| |  |||| |||||  |||||||||||||||||||||||  |||||||| |||| ||| |||||||||| |||||    
T  17743591 ttgatggtcggatatg-gcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccacatggattatcgtt 17743505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 272
Target Start/End: Complemental strand, 45621813 - 45621766
Alignment:
Q  225 aagtttacctgttttgattgcagaatgttagtggtggttaatattctt 272  Q
    |||||||| |||||||||||||||||||||| || |||||| ||||||    
T  45621813 aagtttacttgttttgattgcagaatgttagcggcggttaagattctt 45621766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 18932153 - 18932295
Alignment:
Q  3 aacaatccccgacaacggcgcaaaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattc 102  Q
    ||||||||||||||||  ||| |||||||||||||||| || || || | |||||  || |||||||| ||||||| | | |||||||  ||||  || |    
T  18932153 aacaatccccgacaacaacgccaaaaacttgatggtcgaatataagctagtgtaccaaaccgtttacctagtaatacaatgtaagtagggtatcacatcc 18932252  T
Q  103 acatggattgtcgttccaactaggaaattcgcgttacttattt 145  Q
    || | | |||| |||||||||||  |||||  |||||||||||    
T  18932253 acttcggttgttgttccaactagacaattcatgttacttattt 18932295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 20174722 - 20174664
Alignment:
Q  60 aatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtcgtt 117  Q
    |||||||||||||||||||||||  |||||||| |||| | | ||||||||||||||||    
T  20174722 aatcgtttaccaagtaataaagtgataagtagagtatcatttccacatggattgtcgtt 20174664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 29719318 - 29719260
Alignment:
Q  60 aatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtcgtt 117  Q
    |||||||||||||||||||||||  |||||||| |||| ||| |||| |||||||||||    
T  29719318 aatcgtttaccaagtaataaagtgataagtagattatcgtatccacaaggattgtcgtt 29719260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 32085479 - 32085533
Alignment:
Q  64 gtttaccaagtaataaagtt-taagtagaatatcttattcacatggattgtcgtt 117  Q
    |||||||||||||||||||  |||||||| |||| ||| ||||||||||||||||    
T  32085479 gtttaccaagtaataaagtgataagtagagtatcatatccacatggattgtcgtt 32085533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 19287455 - 19287535
Alignment:
Q  183 gggtttagaggttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttagtggtggtta 264  Q
    |||||||||| ||||| |||||||| | |||| ||| ||  || ||||||||||||| |||||||||||||||  |||||||    
T  19287455 gggtttagag-ttttgtaatttaatttgtttgtaactgaataaggtttacctgttttcattgcagaatgttagcagtggtta 19287535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 28770431 - 28770355
Alignment:
Q  168 aaaataaaagataaagg-gtttagaggttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattg 244  Q
    ||||||||||| ||| | |||||||| |||||||||||||| |  |||||||  | ||||||||||||||||||||||    
T  28770431 aaaataaaagagaaaagagtttagag-ttttgcaatttaatttgcttgcaacataacaaagtttacctgttttgattg 28770355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 23011844 - 23011792
Alignment:
Q  65 tttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgtt 117  Q
    |||||||||||||||||| |||||||| |||  ||| |||| |||||||||||    
T  23011844 tttaccaagtaataaagtgtaagtagattattgtatccacaaggattgtcgtt 23011792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 25618574 - 25618626
Alignment:
Q  66 ttaccaagtaataaagtt-taagtagaatatcttattcacatggattgtcgtt 117  Q
    |||||||||||||||||  |||||||| |||| ||| ||||||||||||||||    
T  25618574 ttaccaagtaataaagtgataagtagagtatcatatccacatggattgtcgtt 25618626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 258
Target Start/End: Original strand, 7147944 - 7148188
Alignment:
Q  3 aacaatccccgacaacggcgcaaaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattc 102  Q
    |||||||||  |||||||||| |||||||||||||||||||| | ||||||||||  |||||||||||||||| ||||   |||||||| |||| | | |    
T  7147944 aacaatccctaacaacggcgccaaaaacttgatggtcggatt-aggcaaatgtaccaaatcgtttaccaagtactaaaaaataagtagagtatcgtctcc 7148042  T
Q  103 acatggattgtcgttccaactagga-aattcgcgttacttatttgagaacaactaaataaaacaataaaataaaagata-aagggtttagaggttttgca 200  Q
    ||||||||||||||| |||| || |  |||| ||||||||||||| ||||||           |||||||||||||| | ||| ||| |||| ||||  |    
T  7148043 acatggattgtcgtttcaac-agaacgattcacgttacttatttgggaacaa-----------aataaaataaaagagataagagttcagagtttttcaa 7148130  T
Q  201 atttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttagtgg 258  Q
    | ||||| | |||||||| | ||| |||||||||||||||||||||||||||| ||||    
T  7148131 agttaatttgtttgcaacagtgcatagtttacctgttttgattgcagaatgttggtgg 7148188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 275
Target Start/End: Complemental strand, 23056283 - 23056044
Alignment:
Q  34 atggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaattcg 133  Q
    ||||||| |||||||||| ||||   || ||||||||||||||| |||| ||||| || |||| ||| || |||| ||||| ||| ||   || |  | |    
T  23056283 atggtcgaatttatgcaagtgtatcaaaacgtttaccaagtaatgaagtgtaagttgagtatcgtatccatatgggttgtcattctaa---ggcagatag 23056187  T
Q  134 cgttacttatttgagaacaactaaataaaa-caataaaataaaagataaagggtttagaggttttgcaatttaatctatttgcaacggagcaaagtttac 232  Q
     ||||| |||||| ||| |  ||||||||| ||||||||| |||||||| ||||  || ||||||||||||| |||||||| |||| ||||||  |||||    
T  23056186 tgttacctatttgggaatatttaaataaaaacaataaaattaaagataacgggtgaaggggttttgcaatttgatctatttacaacagagcaagatttac 23056087  T
Q  233 ctgttttgattgcagaatgttagtggtggttaatattcttcga 275  Q
    |||||||||| | |||||||||| || |||||  |||||||||    
T  23056086 ctgttttgatggtagaatgttagcggcggttaggattcttcga 23056044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 12806033 - 12805919
Alignment:
Q  3 aacaatccccgacaacggcgcaaaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagt-ttaagtagaatatcttatt 101  Q
    ||||||| ||||||||||| | |||||||||||||||||| ||| |||| |||||  |||| ||||||||||||||||||  |||||||| |||| |||     
T  12806033 aacaatctccgacaacggccccaaaaacttgatggtcgga-ttaggcaagtgtaccaaatcatttaccaagtaataaagtgataagtagagtatcatatc 12805935  T
Q  102 cacatggattgtcgtt 117  Q
    ||||||||||||||||    
T  12805934 cacatggattgtcgtt 12805919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 60 - 185
Target Start/End: Complemental strand, 27543001 - 27542881
Alignment:
Q  60 aatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactagg-aaattcgcgttacttatttgagaacaactaaa 158  Q
    |||||||||||||| |||||||| |||||||| |||| ||| |||||| ||||| |||||||||||| || |||| ||| |||||||| ||||      |    
T  27543001 aatcgtttaccaagaaataaagtataagtagagtatcgtatccacatgaattgttgttccaactaggcaatttcgtgttgcttatttgggaac------a 27542908  T
Q  159 taaaacaataaaataaaagataaaggg 185  Q
    |||||||||||||||||||||||||||    
T  27542907 taaaacaataaaataaaagataaaggg 27542881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 163
Target Start/End: Complemental strand, 21074659 - 21074521
Alignment:
Q  25 aaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaacta 124  Q
    |||||||||||| | |||||||||||| |||||  |||| | || ||||||||||||| |||||||| |||| ||| |||  | ||||||||||||||||    
T  21074659 aaaaacttgatgattggatttatgcaactgtaccaaatcatctatcaagtaataaagtgtaagtagagtatcgtatccaccagaattgtcgttccaacta 21074560  T
Q  125 ggaaattcgcgttacttatttgagaacaactaaataaaa 163  Q
     | ||||| ||||||||| ||| ||||||  ||||||||    
T  21074559 tgtaattcacgttacttacttgggaacaagaaaataaaa 21074521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 126
Target Start/End: Complemental strand, 21019717 - 21019616
Alignment:
Q  25 aaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaacta 124  Q
    ||||| |||||| | ||||||| ||||  ||||  |||| | |||||||||||||||| |||||||| |||||||| |||| ||||||||||||||||||    
T  21019717 aaaaaattgatgattggatttaggcaacagtaccaaatcatctaccaagtaataaagtataagtagagtatcttatccacaaggattgtcgttccaacta 21019618  T
Q  125 gg 126  Q
    ||    
T  21019617 gg 21019616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 20397713 - 20397782
Alignment:
Q  184 ggtttagaggttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttag 255  Q
    ||||||||| |||||||||||||| | |||||||| ||||||| |||||||||||| |||||||||||||||    
T  20397713 ggtttagag-ttttgcaatttaatttgtttgcaacagagcaaaatttacctgtttt-attgcagaatgttag 20397782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 254
Target Start/End: Complemental strand, 8557211 - 8557032
Alignment:
Q  65 tttaccaagtaataaagtt-taagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttatttgagaacaactaaataaaa 163  Q
    |||||| |||||||||||  |||||||| |||| ||| |||||||||||||||| ||  ||   |||| |||||||||||||| ||||||   |||||||    
T  8557211 tttaccgagtaataaagtgataagtagagtatcgtatccacatggattgtcgtttcatttaaacaatttgcgttacttatttgggaacaa---aataaaa 8557115  T
Q  164 caataaaataaaagataaagggtttagaggttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgtta 254  Q
     ||      ||| ||||| |||||||||| ||||||||| |||| | |||| |||  || ||||||||||| |||||||||||||||||||    
T  8557114 taa------aaaggataa-gggtttagag-ttttgcaatataatatgtttgaaacatagtaaagtttacctcttttgattgcagaatgtta 8557032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 152
Target Start/End: Complemental strand, 20339850 - 20339758
Alignment:
Q  60 aatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttatttgagaaca 152  Q
    ||||||||||||||||||||| | |||||||| |||| ||||||||||  |||| ||| |||| ||| ||||   ||||||||||| ||||||    
T  20339850 aatcgtttaccaagtaataaaatgtaagtagagtatcgtattcacatgtgttgttgtttcaaccaggcaattgatgttacttatttaagaaca 20339758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 163
Target Start/End: Original strand, 25756659 - 25756791
Alignment:
Q  32 tgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtt-taagtagaatatcttattcacatggattgtcgttccaactaggaaat 130  Q
    ||||||||||||||| |||| |||||  |||| |||| ||| ||||||||   |||||||| |||| ||| ||||   |||||||||| ||||||| |||    
T  25756659 tgatggtcggatttaggcaagtgtacaaaatcatttatcaaataataaagaagtaagtagagtatcgtatccacaaaaattgtcgttctaactaggcaat 25756758  T
Q  131 tcgcgttacttatttgagaacaactaaataaaa 163  Q
    | | |||||||||||| ||||||  ||||||||    
T  25756759 ttgtgttacttatttgggaacaataaaataaaa 25756791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 932697 - 932774
Alignment:
Q  3 aacaatccccgacaacggcgcaaaaaacttgatggtcggatttat-gcaaatgtactgaatcgtttaccaagtaataaa 80  Q
    ||||||||||||||| |||||||| ||||||||| ||||||| || |||| |||| | |||||||||| ||||||||||    
T  932697 aacaatccccgacaatggcgcaaataacttgatgatcggattgatggcaagtgta-tcaatcgtttactaagtaataaa 932774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 264
Target Start/End: Original strand, 6290038 - 6290107
Alignment:
Q  194 ttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttagtggtggtta 264  Q
    |||| ||||||| ||| |||||||| |||||||||| || |||||| ||||||||||||||| ||||||||    
T  6290038 tttttcaatttattctgtttgcaacagagcaaagtt-acttgttttaattgcagaatgttagcggtggtta 6290107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 6289888 - 6289967
Alignment:
Q  32 tgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggatt 111  Q
    ||||||||||||| | |||||||||   |||||||||||||||||||||||  |||||||| |||| ||| ||||||||||    
T  6289888 tgatggtcggatt-aggcaaatgtatcaaatcgtttaccaagtaataaagtgataagtagagtatcatatccacatggatt 6289967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 13908225 - 13908145
Alignment:
Q  181 aagggtttagaggttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttagtggtggtta 264  Q
    ||||||||||||  |||| |||||||||||||||| || ||||||  |||||||| ||||| || ||||||||||||| |||||    
T  13908225 aagggtttagag--tttgaaatttaatctatttgctacagagcaagttttacctg-tttgaatgtagaatgttagtggcggtta 13908145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 18736758 - 18736722
Alignment:
Q  60 aatcgtttaccaagtaataaagtttaagtagaatatc 96  Q
    ||||||||||||||||||||||| |||||||||||||    
T  18736758 aatcgtttaccaagtaataaagtataagtagaatatc 18736722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 162
Target Start/End: Original strand, 12759371 - 12759502
Alignment:
Q  32 tgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtcgttccaactaggaaat 130  Q
    |||||||| ||||||  ||| |||||  ||| |||||||||||||||||||  |||||||| |||| ||| |||| | ||||||||| |||  |  ||||    
T  12759371 tgatggtctgatttagacaagtgtaccaaattgtttaccaagtaataaagtgataagtagagtatcgtatccacaagtattgtcgtttcaaacaaaaaat 12759470  T
Q  131 tcgcgttacttatttgagaacaactaaataaa 162  Q
     ||| ||||||||||| ||||||  |||||||    
T  12759471 ccgctttacttatttgggaacaataaaataaa 12759502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 21301930 - 21301985
Alignment:
Q  60 aatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtc 114  Q
    |||||||||||||||||||||||  |||||||| |||| ||| |||||||||||||    
T  21301930 aatcgtttaccaagtaataaagtgataagtagagtatcgtatccacatggattgtc 21301985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 21825955 - 21825904
Alignment:
Q  60 aatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggatt 111  Q
    ||||||||||| ||||||||||| |||||||| |||| ||| ||||||||||    
T  21825955 aatcgtttaccgagtaataaagtgtaagtagagtatcgtatccacatggatt 21825904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 821601 - 821543
Alignment:
Q  60 aatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtcgtt 117  Q
    |||||||||||||||||||||||  |||||||| |||| ||| |||||||||| |||||    
T  821601 aatcgtttaccaagtaataaagtgataagtagagtatcgtatccacatggattttcgtt 821543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 153
Target Start/End: Original strand, 28728928 - 28729050
Alignment:
Q  32 tgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtt-taagtagaatatcttattcacatggattgtcgttccaactaggaaat 130  Q
    ||||||||||||||| |||| |||    |||  |||| |||||||||||||  |||||||| |||| ||| ||||| |||||||||| |||| |   |||    
T  28728928 tgatggtcggatttaggcaagtgtgtcaaataatttatcaagtaataaagtgataagtagagtatcgtatccacatagattgtcgtttcaaccaaacaat 28729027  T
Q  131 tcgcgttacttatttgagaacaa 153  Q
    ||||||||||| |||| ||||||    
T  28729028 tcgcgttacttgtttgggaacaa 28729050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 31286101 - 31286048
Alignment:
Q  60 aatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgt 113  Q
    |||| |||||||||||||||||| ||| ||||||||| ||| |||| |||||||    
T  31286101 aatcatttaccaagtaataaagtgtaactagaatatcgtatccacagggattgt 31286048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 821476 - 821417
Alignment:
Q  193 gttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgtt 253  Q
    ||||| ||||||||| | |||||||| ||| |||||||||||| ||| |||||||||||||    
T  821476 gtttttcaatttaatatgtttgcaacagagaaaagtttacctg-tttaattgcagaatgtt 821417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 32 - 181
Target Start/End: Original strand, 26008007 - 26008156
Alignment:
Q  32 tgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtt-taagtagaatatcttattcacatggattgtcgttccaactaggaaat 130  Q
    ||||||||| ||||| |||| |||||  |||| ||||||||||||||||||  |||||||| |||  |||  | | |||||||| |||||||||| ||||    
T  26008007 tgatggtcgaatttaggcaagtgtaccaaatcatttaccaagtaataaagtgataagtagagtatggtatcaagagggattgtcattccaactagaaaat 26008106  T
Q  131 tcgcgttacttatttgagaacaactaaataaaacaataaaataaaagataa 181  Q
    |||||||||||||||||||| || ||||||| | |||||||||||||||||    
T  26008107 tcgcgttacttatttgagaataa-taaataataaaataaaataaaagataa 26008156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 163
Target Start/End: Original strand, 15292748 - 15292846
Alignment:
Q  65 tttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttatttgagaacaactaaataaaa 163  Q
    |||||||||||||||||| |||||||| | ||  ||||||||||||||||||||||| |||| ||||| ||||||||||||| ||||||  ||||||||    
T  15292748 tttaccaagtaataaagtgtaagtagagtttcggattcacatggattgtcgttccaattaggcaattcacgttacttatttgggaacaagaaaataaaa 15292846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 163
Target Start/End: Original strand, 15473117 - 15473215
Alignment:
Q  65 tttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttatttgagaacaactaaataaaa 163  Q
    |||||||||||||||||| |||||||| | ||  ||||||||||||||||||||||| |||| ||||| ||||||||||||| ||||||  ||||||||    
T  15473117 tttaccaagtaataaagtgtaagtagagtttcggattcacatggattgtcgttccaattaggcaattcacgttacttatttgggaacaagaaaataaaa 15473215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 31 - 264
Target Start/End: Complemental strand, 24119884 - 24119651
Alignment:
Q  31 ttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaat 130  Q
    |||||||||| |||||  ||| ||| |  ||||||||||||||| ||||||| |||||||| |||  ||| |||||||||| |||||||||||| |||||    
T  24119884 ttgatggtcgaatttagacaagtgtgccaaatcgtttaccaagttataaagtgtaagtagagtattgtatccacatggattttcgttccaactaagaaat 24119785  T
Q  131 tcgcgttacttatttgagaacaactaaataaaacaataaaataaaagataaagggtttagaggttttgcaatttaatctatttgcaacggagcaaagttt 230  Q
    || |  |||||||||| | |||| ||||  ||| |  |  ||||||| ||||||||  |  |||||||||| ||||| | || ||| |  | |||  |||    
T  24119784 tcacactacttatttgggtacaattaaaataaatacaatgataaaaggtaaagggtaaatgggttttgcaaattaatttgttagcatcaaaacaagattt 24119685  T
Q  231 acctgttttgattgcagaatgttagtggtggtta 264  Q
    ||||||||||||||||||||| |||||| |||||    
T  24119684 acctgttttgattgcagaatgatagtggcggtta 24119651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 183
Target Start/End: Original strand, 28317431 - 28317555
Alignment:
Q  65 tttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttatttgagaaca------actaaa 158  Q
    |||||||||||||||||| |||||||| |||| |||  ||||| ||||| ||| |||||||| ||||| ||||||| |||| ||||||      | ||||    
T  28317431 tttaccaagtaataaagtgtaagtagagtatcatatcaacatgtattgttgtttcaactaggcaattcacgttactcatttaagaacagaaaacaataaa 28317530  T
Q  159 taaaacaataaaataaaagataaag 183  Q
    |||||||||||||||||||||||||    
T  28317531 taaaacaataaaataaaagataaag 28317555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 250
Target Start/End: Original strand, 5850925 - 5851132
Alignment:
Q  31 ttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtt-taagtagaatatcttattcacatggattgtcgttccaactaggaaa 129  Q
    ||||||||||||||  | ||| |||||  |||||||||||||||||||||||  |||||||| |||| ||| ||||| |||||||||| |||| |   ||    
T  5850925 ttgatggtcggattagt-caagtgtacctaatcgtttaccaagtaataaagtgataagtagagtatcgtatccacatagattgtcgtttcaaccaaacaa 5851023  T
Q  130 ttcgcgttacttatttgagaacaactaaataaaacaataaaataaaagata-aagggtttagaggttttgcaatttaatctatttgcaacggagcaaagt 228  Q
    | || |||||||||||||||||||           |||||| ||||||| | || |||| |||| |||||||||||||| | |||||||||||||||| |    
T  5851024 tccgtgttacttatttgagaacaa-----------aataaa-taaaagagataatggttaagag-ttttgcaatttaatatgtttgcaacggagcaaaat 5851110  T
Q  229 ttacctgttttgattgcagaat 250  Q
    ||||||||||| ||||||||||    
T  5851111 ttacctgttttaattgcagaat 5851132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 273
Target Start/End: Original strand, 17965189 - 17965259
Alignment:
Q  203 ttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttagtggtggttaatattcttc 273  Q
    |||||||||||||||  |||||||||||| ||||||||||||||||||||||| || |||| | |||||||    
T  17965189 ttaatctatttgcaatagagcaaagtttatctgttttgattgcagaatgttaggggcggttgagattcttc 17965259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 65 - 184
Target Start/End: Original strand, 14006112 - 14006226
Alignment:
Q  65 tttaccaagtaataaagtt-taagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttatttgagaacaactaaataaaa 163  Q
    |||||||||||||||| |  |||||||| |||| |||||||||| ||||| |||||||||||| |||| || |||||||||||  ||| ||      |||    
T  14006112 tttaccaagtaataaaatgataagtagagtatcatattcacatgaattgttgttccaactaggcaatttgcattacttatttggaaactac------aaa 14006205  T
Q  164 caataaaataaaagataaagg 184  Q
    |||||||||||||||||||||    
T  14006206 caataaaataaaagataaagg 14006226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 24110798 - 24110722
Alignment:
Q  3 aacaatccccgacaacggcgcaaaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaa 80  Q
    ||||||||||||||||||||| ||||||||||||  |||| |||||||| ||||   |||| ||||||||||||||||    
T  24110798 aacaatccccgacaacggcgccaaaaacttgatgtgcgga-ttatgcaagtgtatcaaatcatttaccaagtaataaa 24110722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 44011110 - 44011053
Alignment:
Q  60 aatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgtt 117  Q
    |||||||||| |||||||||||| |||||||| |||| ||| ||||||||||||||||    
T  44011110 aatcgtttacgaagtaataaagtgtaagtagagtatcgtatccacatggattgtcgtt 44011053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 254
Target Start/End: Original strand, 14075578 - 14075791
Alignment:
Q  32 tgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtt-taagtagaatatcttattcacatggattgtcgttccaactaggaaat 130  Q
    ||||||| ||||||| | || |||||  |||| |||||||||||| |||||  |||||||| |||| ||| |||||||||||||||| |||| |   |||    
T  14075578 tgatggttggatttaggaaattgtaccaaatcttttaccaagtaagaaagtgataagtagactatcgtatccacatggattgtcgtttcaaccaaacaat 14075677  T
Q  131 tcgcgttacttatttgagaacaactaaataaaacaataaaataaaagataaagggtttagaggttttgcaatttaatctatttgcaacggagcaaagttt 230  Q
      |||||||||||||  ||| ||  |||||||         ||| |||||| |||||||||| |||   || ||||| | |||||||| | |||||||||    
T  14075678 gtgcgttacttatttaggaataataaaataaa---------taagagataa-gggtttagagttttgtaaagttaatatgtttgcaacagtgcaaagttt 14075767  T
Q  231 acctgttttgattgcagaatgtta 254  Q
     |||||||||||||||||||||||    
T  14075768 ccctgttttgattgcagaatgtta 14075791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 17972193 - 17972264
Alignment:
Q  70 caagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttactt 141  Q
    ||||||||||||| |||||||| |||| ||| | ||||||||||| ||| ||||||| ||||| ||||||||    
T  17972193 caagtaataaagtgtaagtagagtatcgtatccgcatggattgtcattctaactaggcaattcacgttactt 17972264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 163
Target Start/End: Original strand, 31288342 - 31288473
Alignment:
Q  32 tgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaatt 131  Q
    ||||||||||||||| | || |||||  ||||||||||||||||||||||| |||||| | |||| ||| || | |||||||| || |||| |    |||    
T  31288342 tgatggtcggatttaggaaagtgtaccaaatcgtttaccaagtaataaagtgtaagtaaagtatcgtatccatagggattgtcttttcaaccaaatcatt 31288441  T
Q  132 cgcgttacttatttgagaacaactaaataaaa 163  Q
    ||||||| ||||| || |||||  ||||||||    
T  31288442 cgcgttaattattcgaaaacaataaaataaaa 31288473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 264
Target Start/End: Complemental strand, 5052886 - 5052819
Alignment:
Q  195 tttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttagtggtggtta 264  Q
    ||||||||||||||| |||||||| |||| |||||||| || ||||||||||||||||||| || |||||    
T  5052886 tttgcaatttaatctgtttgcaacagagc-aagtttacttg-tttgattgcagaatgttagcggcggtta 5052819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 15238935 - 15238993
Alignment:
Q  193 gttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgtt 253  Q
    ||||||||||||||||| ||||||||  ||||||| ||||||| |||||||||||||||||    
T  15238935 gttttgcaatttaatctgtttgcaacatagcaaag-ttacctg-tttgattgcagaatgtt 15238993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 24269615 - 24269667
Alignment:
Q  65 tttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgtt 117  Q
    |||||||||||||||||| |||||||| |||| ||| |||| |||||||||||    
T  24269615 tttaccaagtaataaagtgtaagtagagtatcgtatccacagggattgtcgtt 24269667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 29382448 - 29382390
Alignment:
Q  60 aatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtcgtt 117  Q
    |||||||||||||||||||||||  |||||||| |||| ||| |||| |||||||||||    
T  29382448 aatcgtttaccaagtaataaagtgataagtagagtatcgtatccacagggattgtcgtt 29382390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 30122232 - 30122187
Alignment:
Q  69 ccaagtaataaagtttaagtagaatatcttattcacatggattgtc 114  Q
    |||||||||||||| |||||||| |||| ||| |||||||||||||    
T  30122232 ccaagtaataaagtgtaagtagagtatcatatccacatggattgtc 30122187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 24644855 - 24644907
Alignment:
Q  65 tttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgtt 117  Q
    |||||||||||||||||| |||||||| |||  ||| |||||||||| |||||    
T  24644855 tttaccaagtaataaagtgtaagtagagtattgtatccacatggattatcgtt 24644907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 30783828 - 30783772
Alignment:
Q  60 aatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtcg 115  Q
    |||||||||||||||||||||||  |||||||| |||| ||| ||||| ||||||||    
T  30783828 aatcgtttaccaagtaataaagtgataagtagagtatcgtatccacatagattgtcg 30783772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 26540880 - 26540994
Alignment:
Q  32 tgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaatt 131  Q
    ||||||||||||||| |||| |||||  ||||||||||||||||||||||| |||||||| |||| ||| |||| ||||| || ||||||||||  ||||    
T  26540880 tgatggtcggatttaggcaagtgtaccaaatcgtttaccaagtaataaagtgtaagtagagtatcgtatccacaaggattatcattccaactagacaatt 26540979  T
Q  132 cgcgttacttatttg 146  Q
     ||||||||||||||    
T  26540980 tgcgttacttatttg 26540994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 174 - 275
Target Start/End: Complemental strand, 6501534 - 6501434
Alignment:
Q  174 aaagataaagggtttagaggttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttagtggtggttaatattcttc 273  Q
    |||||| |||||||||||| ||||||||||||||||||||| |||  ||||||||||| ||||||| ||||||||||||||| || |||||  |||||||    
T  6501534 aaagatgaagggtttagag-ttttgcaatttaatctatttgaaacatagcaaagtttagctgttttaattgcagaatgttagcggcggttatgattcttc 6501436  T
Q  274 ga 275  Q
    ||    
T  6501435 ga 6501434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 10064710 - 10064573
Alignment:
Q  6 aatccccgacaacggcgcaaaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcaca 105  Q
    ||||||||||||||| |  ||||| |||||||||| |||||  ||| |||||  ||||||||||||||||||||| |  | |||||||||| ||| ||||    
T  10064710 aatccccgacaacggtgtcaaaaatttgatggtcg-atttaaacaagtgtaccaaatcgtttaccaagtaataaaatgcaggtagaatatcatatccaca 10064612  T
Q  106 tggattgtcgttccaactaggaaattcgcgttacttatt 144  Q
     ||||| |||||| ||||||| ||||| | |||||||||    
T  10064611 aggattttcgttcaaactaggcaattctcattacttatt 10064573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 24267756 - 24267683
Alignment:
Q  181 aagggtttagaggttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttag 255  Q
    |||||||||||| |||||||||||||| | |||||||| ||||||| ||||| ||||||||||||||||||||||    
T  24267756 aagggtttagag-ttttgcaatttaatatgtttgcaacagagcaaaatttacttgttttgattgcagaatgttag 24267683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 184
Target Start/End: Original strand, 33712647 - 33712801
Alignment:
Q  31 ttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtt-taagtagaatatcttattcacatggattgtcgttccaactaggaaa 129  Q
    |||||||||||||||| |||| |||||  |||| |||||||| |||||||||  ||| || |||||  |||| | |   |||||||||||||||||||||    
T  33712647 ttgatggtcggatttaggcaagtgtaccaaatc-tttaccaaataataaagtgataattataatattgtatttagagttattgtcgttccaactaggaaa 33712745  T
Q  130 ttcgcgttacttatttgagaacaactaaat-aaaacaataaaataaaagataaagg 184  Q
    ||||| ||||||||||  ||||||  |||| |||| ||| ||||||||||||||||    
T  33712746 ttcgcattacttatttaggaacaagaaaataaaaataattaaataaaagataaagg 33712801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 117
Target Start/End: Original strand, 12208601 - 12208671
Alignment:
Q  48 gcaaatgtactgaatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtcgtt 117  Q
    |||| |||||| |||||||||||||||||||||||  ||||||||||||| ||| ||||||||||||||||    
T  12208601 gcaagtgtactaaatcgtttaccaagtaataaagtgataagtagaatatcatatccacatggattgtcgtt 12208671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 17610343 - 17610285
Alignment:
Q  60 aatcgtttaccaagtaataaagtt-taagtagaatatcttattcacatggattgtcgtt 117  Q
    |||||||||||||||||||||||| |||||||| |||| ||| ||||||||||||||||    
T  17610343 aatcgtttaccaagtaataaagttataagtagagtatcgtatccacatggattgtcgtt 17610285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 24307028 - 24306950
Alignment:
Q  74 taataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttatttgagaaca 152  Q
    ||||||||| |||||||| |||| |||||| | ||||||||||| |||||| | ||||| ||||||||||||| |||||    
T  24307028 taataaagtgtaagtagagtatcgtattcatagggattgtcgtttcaactaagcaattcacgttacttatttgggaaca 24306950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 21847646 - 21847703
Alignment:
Q  60 aatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgtt 117  Q
    ||||||||||||||||||||||| |||||||| |||  ||| ||||||||||||||||    
T  21847646 aatcgtttaccaagtaataaagtctaagtagagtattgtatccacatggattgtcgtt 21847703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 25958121 - 25958214
Alignment:
Q  60 aatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttatttgagaacaa 153  Q
    |||||||||| ||||||| |||| ||| |||| |||| ||| ||||||||||||||||||||| ||  ||||   |||||||||||| ||||||    
T  25958121 aatcgtttacaaagtaatgaagtgtaaatagagtatcatatccacatggattgtcgttccaaccagacaatttatgttacttatttgggaacaa 25958214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 255
Target Start/End: Complemental strand, 27117834 - 27117619
Alignment:
Q  30 cttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtcgttccaactaggaa 128  Q
    ||||||||||||||| | |||| | |||  |||||||||||||||||||||||  |||||||| |||  |||||||||| ||||||||| |||| |   |    
T  27117834 cttgatggtcggatt-aggcaagtttaccaaatcgtttaccaagtaataaagtgataagtagagtattgtattcacatgaattgtcgtttcaaccaaaca 27117736  T
Q  129 attcgcgttacttatttgagaacaactaaataaaacaataaaataaaagata-aagggtttagaggttttgcaatttaatctatttgcaacggagcaaag 227  Q
    ||  |||||||||||| | ||||||           ||||||||||| || | |||||||||| | |||   || |||||| ||||||||| ||| |||     
T  27117735 atctgcgttacttattagggaacaa-----------aataaaataaacgagataagggtttagtgttttgaaaagttaatcaatttgcaacagagaaaat 27117647  T
Q  228 tttacctgttttgattgcagaatgttag 255  Q
    ||||||||||||||||||| ||||||||    
T  27117646 tttacctgttttgattgcaaaatgttag 27117619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 153
Target Start/End: Original strand, 17837500 - 17837623
Alignment:
Q  30 cttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtt-taagtagaatatcttattcacatggattgtcgttccaactaggaa 128  Q
    ||||||||||||||| | |||| |||||  ||| |||||||||||||||||||| |||||||| |||| ||| |||| |||||||| ||    |||   |    
T  17837500 cttgatggtcggatt-aggcaagtgtaccaaattgtttaccaagtaataaagttataagtagagtatcatatccacaaggattgtcattttgtctaaaca 17837598  T
Q  129 attcgcgttacttatttgagaacaa 153  Q
    |||||||||||||||||| ||||||    
T  17837599 attcgcgttacttatttgggaacaa 17837623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 153
Target Start/End: Complemental strand, 24306390 - 24306299
Alignment:
Q  62 tcgtttaccaagtaataaagtt-taagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttatttgagaacaa 153  Q
    |||||||||||||||||||||  |||||||| |||| ||| |||| |||||| |||| |||| |   ||||||||||||||||||||||||||    
T  24306390 tcgtttaccaagtaataaagtgataagtagagtatcgtatccacagggattg-cgtttcaaccaaataattcgcgttacttatttgagaacaa 24306299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 117
Target Start/End: Original strand, 24281277 - 24281347
Alignment:
Q  48 gcaaatgtactgaatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtcgtt 117  Q
    ||||||||||  |||||||||||||||||||||||  |||||||| |||| ||| |||||||||| |||||    
T  24281277 gcaaatgtaccaaatcgtttaccaagtaataaagtgataagtagattatcatatccacatggattatcgtt 24281347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 13345419 - 13345365
Alignment:
Q  64 gtttaccaagtaataaagtt-taagtagaatatcttattcacatggattgtcgtt 117  Q
    |||||||||||||||||||  |||||||| |||| ||| ||||||||||||||||    
T  13345419 gtttaccaagtaataaagtgataagtagagtatcatatccacatggattgtcgtt 13345365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 16787813 - 16787755
Alignment:
Q  60 aatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtcgtt 117  Q
    ||||||||| |||||||||||||  |||||||| |||| ||||||||| ||||||||||    
T  16787813 aatcgtttatcaagtaataaagtgataagtagagtatcgtattcacatagattgtcgtt 16787755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 21449101 - 21449159
Alignment:
Q  60 aatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtcgtt 117  Q
    |||||||||||||||||||||||  |||||||| |||| ||| |||| |||||||||||    
T  21449101 aatcgtttaccaagtaataaagtgataagtagagtatcgtatccacaaggattgtcgtt 21449159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 23038129 - 23038041
Alignment:
Q  28 aacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtcgtt 117  Q
    ||||||||||| ||||| | |||| |||||  |||||||||||||||||||||||  ||||| || |||| ||| ||||||||||||||||    
T  23038129 aacttgatggttggatt-aggcaagtgtaccaaatcgtttaccaagtaataaagtgataagt-gagtatcgtatccacatggattgtcgtt 23038041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 22664206 - 22664259
Alignment:
Q  48 gcaaatgtactgaatcgtttaccaagtaataaagt-ttaagtagaatatcttat 100  Q
    ||||||||||  |||||||||||||||||||||||  |||||||| ||||||||    
T  22664206 gcaaatgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcttat 22664259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 17017644 - 17017612
Alignment:
Q  226 agtttacctgttttgattgcagaatgttagtgg 258  Q
    |||| ||||||||||||||||||||||||||||    
T  17017644 agttaacctgttttgattgcagaatgttagtgg 17017612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 275
Target Start/End: Complemental strand, 14029 - 13789
Alignment:
Q  25 aaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaat---atcttattcacatggattgtcgttccaa 121  Q
    ||||||||||||||| |||||| |||| ||||   |||||||||||||||||| |||| ||||||||||   ||| |   ||||||||||||| ||||||    
T  14029 aaaaacttgatggtcagatttaggcaagtgtatcaaatcgtttaccaagtaattaagtgtaagtagaattatatcgtgaacacatggattgtcattccaa 13930  T
Q  122 ctaggaaattcgcgttacttatttgagaacaactaaataaaacaataaaataaaagataaagggtttagaggttttgcaatttaatctatttgcaacgga 221  Q
    ||||  |||| |||||||||||||| ||||||             |||||||||||||||| |||  || |||||| |||||| || | |||||| | ||    
T  13929 ctagacaattagcgttacttatttgggaacaa-------------taaaataaaagataaaaggtaaaggggtttttcaatttgatttgtttgcagcaga 13843  T
Q  222 gcaaagtttacctgttttgattgcagaatgttagtggtggttaatattcttcga 275  Q
    ||||  ||||| ||||||||||  |||||||||| ||||||||  |||||||||    
T  13842 gcaagatttacatgttttgattatagaatgttagcggtggttaggattcttcga 13789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 20722292 - 20722192
Alignment:
Q  30 cttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaa 129  Q
    ||||||||||||||||| ||||||||||  |||||||||||||||||||||| ||||||||| |||  ||| |||| |||||||| ||||||||||| ||    
T  20722292 cttgatggtcggatttaggcaaatgtaccaaatcgtttaccaagtaataaag-ttaagtagagtataatatccacaaggattgtctttccaactaggcaa 20722194  T
Q  130 tt 131  Q
    ||    
T  20722193 tt 20722192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 185
Target Start/End: Original strand, 34478480 - 34478664
Alignment:
Q  3 aacaatccccgacaacggcgcaaaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattc 102  Q
    ||||||| ||| ||||||||  ||||| |||||||| ||||||  |||| | |||  ||||||||||||| ||||||||| |||||||| |||| ||| |    
T  34478480 aacaatctccgtcaacggcgtcaaaaatttgatggttggatttgggcaattctaccaaatcgtttaccaaataataaagtgtaagtagagtatcgtatcc 34478579  T
Q  103 acatggattgtcgttccaactaggaaattcgcgttacttatttgagaacaactaaataaa--acaataaaataaaagataaaggg 185  Q
    ||| |||||| | || |||||||| |||||  ||||||| ||||  |||||  |||||||  | |||||||||||||||||||||    
T  34478580 acaaggattgacatttcaactaggcaattcatgttacttttttggaaacaataaaataaaataaaataaaataaaagataaaggg 34478664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 264
Target Start/End: Original strand, 9726006 - 9726229
Alignment:
Q  31 ttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtcgttccaactaggaaa 129  Q
    |||||||||||||| | |||| |||||  |||||||||||||||||||||||  |||||||| |||| ||| |||||||||||||||| |  | |   ||    
T  9726006 ttgatggtcggatt-aggcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccacatggattgtcgtttcgtccaaacaa 9726104  T
Q  130 ttcgcgttacttatttgagaacaactaaataaaacaataaaataaaagata-aagggtttagaggttttgc-aatttaatctatttgcaacggagcaaag 227  Q
    || |||||||||||||| ||||||           |||||||||||||| | ||||||||| | ||||||| || ||||| | |||| ||  ||| ||||    
T  9726105 tttgcgttacttatttgggaacaa-----------aataaaataaaagagataagggttta-aagttttgcaaagttaatatgtttggaaaagagaaaag 9726192  T
Q  228 tttacctgttttgattgcagaatgttagtggtggtta 264  Q
    ||||||||||||||||||||||||||||||| |||||    
T  9726193 tttacctgttttgattgcagaatgttagtggcggtta 9726229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 257
Target Start/End: Complemental strand, 28589412 - 28589326
Alignment:
Q  169 aaataaaagataaagggtttagaggttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttagtg 257  Q
    ||||||||||||| |||||||||| ||||||||| |||| | |||||||| ||| ||||||||| ||||||||||||||||||||||||    
T  28589412 aaataaaagataa-gggtttagag-ttttgcaatataatatgtttgcaacagagtaaagtttacatgttttgattgcagaatgttagtg 28589326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 24188210 - 24188133
Alignment:
Q  177 gataaagggtttagaggttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttag 255  Q
    ||||||||||||| || |||||||||||||||| |||||||| |||||||||||| |||||||||||| | ||||||||    
T  24188210 gataaagggtttatag-ttttgcaatttaatctgtttgcaacagagcaaagtttatctgttttgattgaaaaatgttag 24188133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 153
Target Start/End: Complemental strand, 15614298 - 15614171
Alignment:
Q  32 tgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatgg------attgtcgttccaactag 125  Q
    |||||||||||||||   ||||||||| ||||||||| | ||||||||||| |||||||| |||  ||| |||||||      ||||| |||||||||||    
T  15614298 tgatggtcggatttagaaaaatgtactaaatcgtttatccagtaataaagtataagtagattataatatccacatggattgggattgttgttccaactag 15614199  T
Q  126 gaaattcgcgttacttatttgagaacaa 153  Q
    | ||||| ||||||||||||| ||||||    
T  15614198 gcaattcacgttacttatttgggaacaa 15614171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 273
Target Start/End: Complemental strand, 28586174 - 28585914
Alignment:
Q  3 aacaatccccgacaacggcgcaaaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtt-taagtagaatatcttatt 101  Q
    |||| ||| ||||||||  || ||||||||||||||||||||||  ||| | |||  ||||||||||| ||||||||| |  |||||||| |||| |||     
T  28586174 aacactccacgacaacgatgccaaaaacttgatggtcggatttagacaagtataccaaatcgtttaccgagtaataaattgataagtagagtatcatatc 28586075  T
Q  102 cacatggattgtcgttccaactaggaaattcgcgttacttatttgagaacaactaaataaaacaataaaataaaagataaagggtttagaggttttgcaa 201  Q
     ||||||||||||||| |||| |   ||| | ||||||||||||| |||  ||||  ||||| ||    || |||||||| |||||||||  ||||||||    
T  28586074 gacatggattgtcgtttcaacaaaacaatccacgttacttatttg-gaa--acta--taaaataa----attaaagataa-gggtttagat-ttttgcaa 28585986  T
Q  202 tttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttagtggtggttaatattcttc 273  Q
    |||||| | ||| |||| ||| |||||||| |||||||||||| |||||||||| || |||||  |||||||    
T  28585985 tttaatatgtttacaacagagaaaagtttatctgttttgattgtagaatgttagcggcggttaggattcttc 28585914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 275
Target Start/End: Complemental strand, 7542978 - 7542837
Alignment:
Q  128 aattcgcgttacttatttgagaacaactaaataaaacaataaaataaaagata-aagggtttagaggttttgcaatttaatctatttgcaacggagcaaa 226  Q
    ||||||||||||||||| || ||||   ||||||   |||||||||||||| | |||||||| || ||||||||||||||| | || ||||  ||| |||    
T  7542978 aattcgcgttacttattcgaaaaca---aaataa---aataaaataaaagagataagggtttcga-gttttgcaatttaattttttcgcaatagagtaaa 7542886  T
Q  227 gtttacctgttttgattgcagaatgttagtggtggttaatattcttcga 275  Q
     ||||| |||||||||||||||||||||| || |||||  |||||||||    
T  7542885 ttttacatgttttgattgcagaatgttagcggcggttatgattcttcga 7542837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 185
Target Start/End: Original strand, 9386070 - 9386186
Alignment:
Q  74 taataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttatttgagaacaactaaat-----aaaacaata 168  Q
    ||||||||| |||||||| |||| ||| ||||| |||| ||| | ||||||||||||||  |||||||||||  ||||||  ||||     |||||||||    
T  9386070 taataaagtgtaagtagagtatcgtatccacatagattatcgattcaactaggaaattcaagttacttatttaggaacaagaaaataaataaaaacaata 9386169  T
Q  169 aaataaaagataaaggg 185  Q
    |||||||||||||||||    
T  9386170 aaataaaagataaaggg 9386186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 8241233 - 8241311
Alignment:
Q  3 aacaatccccgacaacggcgcaaaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagt 82  Q
    ||||||||||||||||| ||||||||||||||| |||||| ||| |||| |||||  |||||||||| |||||| |||||    
T  8241233 aacaatccccgacaacgacgcaaaaaacttgatagtcgga-ttaggcaagtgtaccaaatcgtttacgaagtaagaaagt 8241311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 31629229 - 31629127
Alignment:
Q  31 ttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtt-taagtagaatatcttattcacatggattgtcgttccaactaggaaa 129  Q
    |||||||||| |||||  ||| ||||   ||||||||||||||||||||| |  || ||||||||   ||||||||||||||||||||||||||||| ||    
T  31629229 ttgatggtcgaatttagacaattgtatgaaatcgtttaccaagtaataaaatgataggtagaataatgtattcacatggattgtcgttccaactaggcaa 31629130  T
Q  130 ttc 132  Q
    |||    
T  31629129 ttc 31629127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 23088297 - 23088236
Alignment:
Q  194 ttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttag 255  Q
    |||| ||||||||| | |||||||  ||||||||||||||||||||||||| ||||||||||    
T  23088297 tttttcaatttaatttgtttgcaatagagcaaagtttacctgttttgattgtagaatgttag 23088236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 9385973 - 9386069
Alignment:
Q  66 ttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttatttgagaacaactaaataaa 162  Q
    |||||||||||||||||  ||||||| |  | ||| |||||||||||||||| |||||||| ||||| | ||||||||||  ||||||  |||||||    
T  9385973 ttaccaagtaataaagtgcaagtagagtcgcgtatccacatggattgtcgtttcaactaggcaattcacattacttatttaggaacaagaaaataaa 9386069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 26215501 - 26215388
Alignment:
Q  31 ttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaat 130  Q
    ||||| |||||||||| ||||  ||||  |||| ||| |||| ||||||||| |||||||| |||| ||| || || |||||||||| ||| |||| |||    
T  26215501 ttgatagtcggatttaggcaatagtaccaaatcattt-ccaaataataaagtgtaagtagagtatcgtatccatatagattgtcgtttcaattaggcaat 26215403  T
Q  131 tcgcgttacttattt 145  Q
    || ||||||||||||    
T  26215402 tcacgttacttattt 26215388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 17729288 - 17729349
Alignment:
Q  193 gttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgtta 254  Q
    ||||| |||||||||||||||||||| || ||| ||||||  |||||||||| |||||||||    
T  17729288 gttttacaatttaatctatttgcaacagaacaatgtttactagttttgattgtagaatgtta 17729349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 25927417 - 25927338
Alignment:
Q  32 tgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtt-taagtagaatatcttattcacatggatt 111  Q
    ||||||||||||| | |||| |||||  || ||||||||||||||||||||  ||||||||||||| ||| ||||||||||    
T  25927417 tgatggtcggatt-aggcaagtgtaccaaaacgtttaccaagtaataaagtgataagtagaatatcgtatccacatggatt 25927338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 33655799 - 33655755
Alignment:
Q  231 acctgttttgattgcagaatgttagtggtggttaatattcttcga 275  Q
    ||||||||||||||||||||||||||||| ||||  |||||||||    
T  33655799 acctgttttgattgcagaatgttagtggtagttaggattcttcga 33655755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 12183434 - 12183363
Alignment:
Q  44 ttatgcaaatgtactgaatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtc 114  Q
    |||||||| |||||  |||||||||||||||||||||||  |||||| | |||| ||| |||||||||||||    
T  12183434 ttatgcaagtgtaccaaatcgtttaccaagtaataaagtgataagtacagtatcgtatccacatggattgtc 12183363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 9516797 - 9516855
Alignment:
Q  60 aatcgtttaccaagtaataaagtt-taagtagaatatcttattcacatggattgtcgtt 117  Q
    ||||||||||| |||||||||||  |||||||| |||| ||| ||||||||||||||||    
T  9516797 aatcgtttacctagtaataaagtgataagtagagtatcgtatccacatggattgtcgtt 9516855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 15466345 - 15466418
Alignment:
Q  22 gcaaaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatc 96  Q
    |||||||| ||||||| |||||| | |||| |||||  ||||||||||||||||||||||| || ||||| ||||    
T  15466345 gcaaaaaaattgatggccggatt-aggcaagtgtaccaaatcgtttaccaagtaataaagtgtacgtagagtatc 15466418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 5624640 - 5624693
Alignment:
Q  48 gcaaatgtactgaatcgtttaccaagtaataaagt-ttaagtagaatatcttat 100  Q
    ||||||||||  |||||||||||||||||||||||  |||||||| ||||||||    
T  5624640 gcaaatgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcttat 5624693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 21672522 - 21672470
Alignment:
Q  60 aatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggatt 111  Q
    |||||||||||||||||||||||  |||||||| |||| ||| ||||||||||    
T  21672522 aatcgtttaccaagtaataaagtgataagtagagtatcgtatccacatggatt 21672470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 264
Target Start/End: Complemental strand, 31626187 - 31626159
Alignment:
Q  236 ttttgattgcagaatgttagtggtggtta 264  Q
    |||||||||||||||||||||||||||||    
T  31626187 ttttgattgcagaatgttagtggtggtta 31626159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 7843 - 7917
Alignment:
Q  15 caacggcgcaaaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagta 89  Q
    ||||||||| |||||||||||||||| ||||| | || |||||| ||||||||||||||||||||||||||||||    
T  7843 caacggcgccaaaaacttgatggtcgaatttaggtaagtgtactcaatcgtttaccaagtaataaagtttaagta 7917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 185
Target Start/End: Original strand, 12092 - 12246
Alignment:
Q  31 ttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagt-ttaagtagaatatcttattcacatggattgtcgttccaactaggaaa 129  Q
    ||||| |||||||||| |||| |||||  ||| ||||||||||||||||| |  |||||| | |||| |||||| |||||||||| || |||| ||  ||    
T  12092 ttgattgtcggatttaggcaagtgtaccaaattgtttaccaagtaataaactgataagtaaactatcgtattcatatggattgtcatttcaacaagacaa 12191  T
Q  130 ttcgcgttacttatttgagaacaactaaataaaacaataaaataaaagataaaggg 185  Q
     | ||| |||||||||| |||||| |||| || | |||||||||||||||||||||    
T  12192 cttgcgctacttatttgggaacaa-taaacaataaaataaaataaaagataaaggg 12246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 18713 - 18641
Alignment:
Q  181 aagggtttagaggttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttag 255  Q
    |||||||||||| |||||||||||||||| |||||||| || |||||||||| || |||||||||||||||||||    
T  18713 aagggtttagag-ttttgcaatttaatctgtttgcaacagaacaaagtttacatg-tttgattgcagaatgttag 18641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 223006 - 222925
Alignment:
Q  181 aagggtttagaggttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttagtggtggtta 264  Q
    |||||||||||| |||||||||||||||| |||||||  || |||||||||| || ||||||||||||||||||| || |||||    
T  223006 aagggtttagag-ttttgcaatttaatctgtttgcaatagaacaaagtttacatg-tttgattgcagaatgttagcggcggtta 222925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 15419 - 15367
Alignment:
Q  203 ttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttag 255  Q
    ||||||| |||||||| |||| |||||||||||||||||||||||||||||||    
T  15419 ttaatctgtttgcaacagagcgaagtttacctgttttgattgcagaatgttag 15367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0672 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0672
Description:

Target: scaffold0672; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 1869 - 1932
Alignment:
Q  193 gttttgcaatttaatctatttgcaacggagcaaagtttacctgttttgattgcagaatgttagtgg 258  Q
    ||||||||||||||||| ||||||||||||||||| ||||| | ||||||||||||| ||||||||    
T  1869 gttttgcaatttaatctgtttgcaacggagcaaag-ttacc-gatttgattgcagaaagttagtgg 1932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 22247 - 22364
Alignment:
Q  14 acaacggcgcaaaaaacttgatggtcggatttatgcaaatgtactgaatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgt 113  Q
    |||||||||| |||||||||||||||| ||||| | ||| ||||  ||||||||||||| |||| || | |||||||| |||  ||| |||  |||||||    
T  22247 acaacggcgccaaaaacttgatggtcgaatttaggaaaaggtaccaaatcgtttaccaattaatgaaatgtaagtagagtatggtatgcacgaggattgt 22346  T
Q  114 cgttccaactaggaaatt 131  Q
    |||  |||||||| ||||    
T  22347 cgtatcaactaggcaatt 22364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 11377 - 11421
Alignment:
Q  211 tttgcaacggagcaaagtttacctgttttgattgcagaatgttag 255  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  11377 tttgcaacaaagcaaagtttacctgttttgattgcagaatgttag 11421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 115642 - 115732
Alignment:
Q  60 aatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgttccaactaggaaattcgcgttacttatttgagaacaa 153  Q
    |||||||||  |||||||||||| |||||||  || | |||||||| || ||||||||  |||||| |||||| ||||||||||||||||||||    
T  115642 aatcgtttaataagtaataaagtgtaagtag--taccgtattcacaggggttgtcgttt-aactagaaaattcacgttacttatttgagaacaa 115732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 24941 - 24982
Alignment:
Q  3 aacaatccccgacaacggcgcaaaaaacttgatggtcggatt 44  Q
    ||||||||||| ||||||||| |||||| |||||||||||||    
T  24941 aacaatccccggcaacggcgccaaaaacatgatggtcggatt 24982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 89940 - 89883
Alignment:
Q  60 aatcgtttaccaagtaataaagtttaagtagaatatcttattcacatggattgtcgtt 117  Q
    ||||||||||||||||||||||| |||||||| |||| |||  ||| | |||||||||    
T  89940 aatcgtttaccaagtaataaagtgtaagtagagtatcatatctacaagtattgtcgtt 89883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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