View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2787_low_2 (Length: 496)
Name: NF2787_low_2
Description: NF2787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2787_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 8 - 489
Target Start/End: Complemental strand, 39030092 - 39029598
Alignment:
| Q |
8 |
ggacatcatcactcctaccagaaacccaacacaatcaatatg-------------tatctgtttgaatattgaatttcaatttattatgatgaacatgat |
94 |
Q |
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| T |
39030092 |
ggacttcatcactcctaccagaaacccaacacaatcaatatgattatctaatatgtatctgtttgaatattgaatctcaatttattatgatgaacatgat |
39029993 |
T |
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| Q |
95 |
gaaccttgattcattctaatgaatcattactaaacttaatgtagtcaaccactttttggtcaaatttgtacaaacctaagactcgattcacatttcgaaa |
194 |
Q |
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| T |
39029992 |
gaaccttgattcattctaatgaatcattactaaacttaatgtagtcaaccactttttggtcaaatttgtacaaacctaagactcgattcacatttcgaaa |
39029893 |
T |
|
| Q |
195 |
acaatatcttccaattcatgatttgaatcttaatagtttgcatacattagtcctccctttgagtttgaaaaactgcatttaataaaaatgttaaatgatt |
294 |
Q |
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| T |
39029892 |
acaatatcttccaattcatgatttgaatcttaatagtttgcatacattagtcctcccttttagtttgaaaaatttcatttaataaaaatgttaaatgatt |
39029793 |
T |
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| Q |
295 |
ttctctaggttcgtttgatgcatggagacattggtattgtggacaaggaagttggcaaaagaggaacatgcttcaagttcaatgtgcttctcatcttatg |
394 |
Q |
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| T |
39029792 |
ttctctaggttcgtttgatgcatggagacattggtattgtggacaaggaagttggcaaaagaggaacatgcttcaagttcaatgtgcttctcaccttatg |
39029693 |
T |
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| Q |
395 |
tgagaatgagacagtgaattatgagtatggatcaaccgcaagtgacaaaagccaaactctagagaaaaagttaacaattcgcactgctagttctg |
489 |
Q |
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| T |
39029692 |
tgagaatgagacagtgaattatgagtatggatcaaccgcaggtgacaaaagccaaactctagagaaaaagttaacaattcgcactgctagttctg |
39029598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 90 - 151
Target Start/End: Complemental strand, 30284589 - 30284527
Alignment:
| Q |
90 |
atgatgaaccttgattcattctaatgaatcatta-ctaaacttaatgtagtcaaccacttttt |
151 |
Q |
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| T |
30284589 |
atgatgaatcatgattcattgtaatgaatcattatctaaacttagtgtagtcaaccacttttt |
30284527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 30863939 - 30863874
Alignment:
| Q |
101 |
tgattcattctaatgaatcatta-ctaaacttaatgtagtcaaccac-tttttggtcaaatttgta |
164 |
Q |
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| T |
30863939 |
tgattcattctaatgaatcattacctaaacttggtgtagccaaccactttttttgtcaaatttgta |
30863874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 52750135 - 52750186
Alignment:
| Q |
101 |
tgattcattctaatgaatcattac-taaacttaatgtagtcaaccacttttt |
151 |
Q |
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| T |
52750135 |
tgattcattctaatgaatcactacataaacttagtgtagccaaccacttttt |
52750186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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