View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2787_low_21 (Length: 269)

Name: NF2787_low_21
Description: NF2787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2787_low_21
NF2787_low_21
[»] chr2 (8 HSPs)
chr2 (1-249)||(39388262-39388510)
chr2 (1-157)||(39197396-39197552)
chr2 (155-249)||(39162675-39162765)
chr2 (155-249)||(39206429-39206519)
chr2 (155-249)||(39197257-39197347)
chr2 (1-93)||(39162514-39162606)
chr2 (19-78)||(39191789-39191846)
chr2 (1-93)||(39206588-39206680)
[»] chr5 (2 HSPs)
chr5 (155-249)||(33561681-33561771)
chr5 (91-157)||(33561425-33561490)
[»] chr1 (1 HSPs)
chr1 (20-94)||(51171409-51171483)


Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 39388510 - 39388262
Alignment:
Q  1 tgagttaagtctacatcaacccaacaatagaaagtacatttatgagttcatgtacaaaaggcttctctaaaatatttcagccatatgttgtaaaatttat 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39388510 tgagttaagtctgcatcaacccaacaatagaaagtacatttatgagttcatgtacaaaaggcttctctaaaatatttcagccatatgttgtaaaatttat 39388411  T
Q  101 gacctccatttatgtctagactctcaagtctcaggtaacaagcaaaataagcagtacaagtggaagaaataaagcctagaatgattgcaatgaaagaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39388410 gacctccatttatgtctagactctcaagtctcaggtaacaagcaaaataagcagtacaagtggaagaaataaagcctagaatgattgcaatgaaagaaga 39388311  T
Q  201 ttttagagaaaatgttacgtagttttgtataacatggcagattggtcat 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39388310 ttttagagaaaatgttacgtagttttgtataacatggcagattggtcat 39388262  T

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Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 39197552 - 39197396
Alignment:
Q  1 tgagttaagtctacatcaacccaacaatagaaagtacatttatgagttcatgtacaaaaggcttctctaaaatatttcagccatatgttgtaaaatttat 100  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||  |   |||||||| || |||||    
T  39197552 tgagttaagtctgcattaacccaacaatagaaagtacatttatgagttaatgaacaaaaagcttctctaaaatattttggttgtatgttgtcaattttat 39197453  T
Q  101 gacctccatttatgtctagactctcaagtctcaggtaacaagcaaaataagcagtac 157  Q
    ||| ||  |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39197452 gacttctgtttatgtctagactctcaagtctcaggtaataagcaaaataagcagtac 39197396  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 39162675 - 39162765
Alignment:
Q  155 tacaagtggaagaaataaagcctagaatgattgcaatgaaagaagattttagagaaaatgttacgtagttttgtataacatggcagattggtcat 249  Q
    |||||||||| || ||||||||||||    ||||| ||||| | |||||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  39162675 tacaagtggatgatataaagcctaga----ttgcagtgaaaaaggattttagagaaaatgctatctagttttgtataacatggcagattggtcat 39162765  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 39206519 - 39206429
Alignment:
Q  155 tacaagtggaagaaataaagcctagaatgattgcaatgaaagaagattttagagaaaatgttacgtagttttgtataacatggcagattggtcat 249  Q
    |||||||||| || ||||||||||||    ||||| ||||| | |||||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  39206519 tacaagtggatgatataaagcctaga----ttgcagtgaaaaaggattttagagaaaatgctatctagttttgtataacatggcagattggtcat 39206429  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 39197347 - 39197257
Alignment:
Q  155 tacaagtggaagaaataaagcctagaatgattgcaatgaaagaagattttagagaaaatgttacgtagttttgtataacatggcagattggtcat 249  Q
    ||||||||||| | ||||||||||||    ||||| ||||| ||||||||||| |||||| ||  |||||||||||||||||| |||||||||||    
T  39197347 tacaagtggaaaatataaagcctaga----ttgcagtgaaacaagattttagataaaatgctatatagttttgtataacatggaagattggtcat 39197257  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 39162514 - 39162606
Alignment:
Q  1 tgagttaagtctacatcaacccaacaatagaaagtacatttatgagttcatgtacaaaaggcttctctaaaatatttcagccatatgttgtaa 93  Q
    |||||||||||| ||| |||||||| |||||||||| ||||||||||  ||| ||||||   ||||||||||||||   | ||||||||||||    
T  39162514 tgagttaagtctgcattaacccaacgatagaaagtatatttatgagtcaatgaacaaaaaaattctctaaaatattgtggtcatatgttgtaa 39162606  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 39191846 - 39191789
Alignment:
Q  19 acccaacaatagaaagtacatttatgagttcatgtacaaaaggcttctctaaaatatttc 78  Q
    ||||||||||||||||||  |||||||||| ||| |||||| ||||||||||||||||||    
T  39191846 acccaacaatagaaagta--tttatgagttaatgaacaaaaagcttctctaaaatatttc 39191789  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 39206680 - 39206588
Alignment:
Q  1 tgagttaagtctacatcaacccaacaatagaaagtacatttatgagttcatgtacaaaaggcttctctaaaatatttcagccatatgttgtaa 93  Q
    |||||||||||| ||| |||||||| |||||||||| ||||||||||  ||| ||||||   ||||||||||||||   | ||||||||||||    
T  39206680 tgagttaagtctgcattaacccaacgatagaaagtatatttatgagtcaatgaacaaaaaaattctctaaaatattgtggtcatatgttgtaa 39206588  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 33561681 - 33561771
Alignment:
Q  155 tacaagtggaagaaataaagcctagaatgattgcaatgaaagaagattttagagaaaatgttacgtagttttgtataacatggcagattggtcat 249  Q
    ||||||||||||| ||||||||||||    ||||| ||||| | |||||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  33561681 tacaagtggaagatataaagcctaga----ttgcagtgaaaaaggattttagagaaaatgctatctagttttgtataacatggcagattggtcat 33561771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 33561425 - 33561490
Alignment:
Q  91 taaaatttatgacctccatttatgtctagactctcaagtctcaggtaacaagcaaaataagcagtac 157  Q
    |||| |||||||| ||  |||||||||||||||| |||||||| ||||||||||| |||||||||||    
T  33561425 taaattttatgacttctgtttatgtctagactct-aagtctcaagtaacaagcaatataagcagtac 33561490  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 51171483 - 51171409
Alignment:
Q  20 cccaacaatagaaagtacatttatgagttcatgtacaaaaggcttctctaaaatatttcagccatatgttgtaaa 94  Q
    |||||||||||||| |||||||| ||||| ||  ||| ||  ||||||||||||||||  || ||||||||||||    
T  51171483 cccaacaatagaaaatacatttacgagttaatcaacataatccttctctaaaatattttggctatatgttgtaaa 51171409  T

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