View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2787_low_22 (Length: 267)
Name: NF2787_low_22
Description: NF2787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2787_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 6133745 - 6133907
Alignment:
| Q |
1 |
ccaaagaccttttccaatgagataattctttaccagcacactccaatctaagtaattatctcttgtaagaacttcaagaactattccggttgatgcaata |
100 |
Q |
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| T |
6133745 |
ccaaagaccttttccaatgagataattcttcaccagcacactccaatctaagtaattatctcttgttagaacttcaagaactattccggttgatgcaata |
6133844 |
T |
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| Q |
101 |
tttgcagctgccattaagatctgccaaaaatatatcccaatttacaaaataaaatgaataagg |
163 |
Q |
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| T |
6133845 |
tttgcagctgccattaagatctgccaaaaatatatcccaatttacaaaataaaatgaataagg |
6133907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 6087901 - 6087774
Alignment:
| Q |
1 |
ccaaagaccttttccaatgagataattctttaccagcacactccaatctaagtaattatctcttgtaagaacttcaagaactattccggttgatgcaata |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
6087901 |
ccaaagaccttttccaatgagataattcttcaccagcacactccaatctaagtaattatctcttgttagaacttcaagaactattccagttgatgcaata |
6087802 |
T |
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| Q |
101 |
tttgcagctgccattaagatctgccaaaa |
129 |
Q |
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| T |
6087801 |
tttgcagctgcca-tatgatctgccaaaa |
6087774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 180 - 257
Target Start/End: Original strand, 6134109 - 6134186
Alignment:
| Q |
180 |
ttattaattctataagacaagttaattttactgacaaaaataacggtcgcagttgcattaatgatttcacaatctctg |
257 |
Q |
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| T |
6134109 |
ttattaattctataagacaagttaattttactgacaaaaataacggtcgcagttgcattaatgatttcacaatttctg |
6134186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 6866454 - 6866537
Alignment:
| Q |
39 |
cactccaatctaagtaattatctcttgtaagaacttcaagaactattccggttgatgcaatatttgcagctgccattaagatct |
122 |
Q |
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| T |
6866454 |
cactccaatccaagtaattttctcttgtaagaacttcaagaactattccggttgatgcaatacttgcagcttccattatgatct |
6866537 |
T |
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