View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2787_low_23 (Length: 257)
Name: NF2787_low_23
Description: NF2787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2787_low_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 787026 - 787269
Alignment:
| Q |
1 |
caatcattatcatttgtctgtaattagtaagagcacgatataaaattagcaagagcaagtgcagtgttttgcattgtacatggaaggaaaaataaagtct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
787026 |
caatcattatcatttgtctgtaattagtaagagcacgatataaaattagcaagagcaagtgcagtgttttgcattgtacatggaaggaaaaataaagtct |
787125 |
T |
|
| Q |
101 |
aagacacttaattggtggggtaaatatgatagatttatttccctaagacatactattattataagatagataaaatttaattagtactt---nnnnnnnn |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
787126 |
aagacacttaattggtggggtaaatatgatagatttatttccctaagacatactattattataagatagataaaatttaattagtacttaaaaaaaaaaa |
787225 |
T |
|
| Q |
198 |
nntgcctgatatttaagatttgacagcgtggaagttgtccatat |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
787226 |
tatgcctgatatttaagatttgacagcgtggaagttgtccatat |
787269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University