View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2787_low_24 (Length: 255)

Name: NF2787_low_24
Description: NF2787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2787_low_24
NF2787_low_24
[»] chr1 (3 HSPs)
chr1 (1-243)||(39446340-39446584)
chr1 (1-205)||(39467677-39467884)
chr1 (193-227)||(39467902-39467936)
[»] chr7 (7 HSPs)
chr7 (58-120)||(27284855-27284918)
chr7 (174-243)||(27284678-27284747)
chr7 (67-120)||(32069009-32069062)
chr7 (60-120)||(1096835-1096894)
chr7 (70-118)||(7474545-7474593)
chr7 (65-120)||(3877741-3877796)
chr7 (154-217)||(32069165-32069228)
[»] chr8 (1 HSPs)
chr8 (60-118)||(12050929-12050987)
[»] chr5 (3 HSPs)
chr5 (26-68)||(23781368-23781410)
chr5 (26-68)||(23868321-23868363)
chr5 (62-118)||(31778587-31778643)
[»] scaffold0351 (1 HSPs)
scaffold0351 (70-118)||(2896-2944)
[»] chr6 (3 HSPs)
chr6 (60-118)||(28052223-28052281)
chr6 (28-92)||(30453360-30453424)
chr6 (62-116)||(19840960-19841014)
[»] chr3 (1 HSPs)
chr3 (61-118)||(27056854-27056911)
[»] chr4 (1 HSPs)
chr4 (62-118)||(1509462-1509518)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 39446340 - 39446584
Alignment:
Q  1 aatgtttggttat--gatgatgtcacaacaagaaaatcaatgatttgctacgaaaataatggtagctaatctctagcaaaactcatttagctactattta 98  Q
    |||||||||||||  |||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  39446340 aatgtttggttatttgatgatatcacaacaagaaaatcaacgatttactacgaaaataatggtagctaatctctagcaaaactcatttagctactattaa 39446439  T
Q  99 attgggaattagctgtcatattaggaaaactctagctaatttcaaactacacgctgcaatatactggtcaaaaaattatatttccttgctatttagttag 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  39446440 attgggaattagctgtcatattaggaaaactctagctaatttcaaactacaccctgcaatatactggtcaaaaaattatatttcctagctatttagttag 39446539  T
Q  199 gatatttactcaataatttcgaagtaaataactagccacaggttc 243  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  39446540 gatatttcctcaataatttcgaagtaaataactagccacaggttc 39446584  T

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Target: chr1; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 39467677 - 39467884
Alignment:
Q  1 aatgtttggttat--gatgatgtcacaacaagaaaatcaatgatttgctacgaaaataatggtagctaatctctagcaaaactcatttagctactattta 98  Q
    |||||||||||||  | |||||||||||||||||||||||| ||||||||||||| || |  |||||||||||||||||||||||||||||||| |||||    
T  39467677 aatgtttggttatttgttgatgtcacaacaagaaaatcaattatttgctacgaaattattaatagctaatctctagcaaaactcatttagctacaattta 39467776  T
Q  99 attgggaattagctgtcatattaggaaaactctagctaatttcaaactacacgct-gcaatatactggtcaaaaaattatatttccttgctatttagtta 197  Q
    ||| |||||| ||||||||| ||| ||||||||||||||||||||||||||| || ||||||||| |||||||| |||||||||||| ||||||||||||    
T  39467777 attaggaatttgctgtcatactagcaaaactctagctaatttcaaactacaccctagcaatataccggtcaaaacattatatttcctagctatttagtta 39467876  T
Q  198 ggatattt 205  Q
    ||||||||    
T  39467877 ggatattt 39467884  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 39467902 - 39467936
Alignment:
Q  193 agttaggatatttactcaataatttcgaagtaaat 227  Q
    ||||||||||||| |||||||||||||||||||||    
T  39467902 agttaggatatttcctcaataatttcgaagtaaat 39467936  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 27284918 - 27284855
Alignment:
Q  58 tggtagctaa-tctctagcaaaactcatttagctactatttaattgggaattagctgtcatatt 120  Q
    |||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27284918 tggtagctaaatctttagcataactcatttagctactatttaattgggaattagctgtcatatt 27284855  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 243
Target Start/End: Complemental strand, 27284747 - 27284678
Alignment:
Q  174 ttatatttccttgctatttagttaggatatttactcaataatttcgaagtaaataactagccacaggttc 243  Q
    ||||||||||| ||||||||| |||||||||| ||||||||||| |||| |||| |||||||||| ||||    
T  27284747 ttatatttcctagctatttaggtaggatatttcctcaataattttgaagcaaatcactagccacatgttc 27284678  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 32069009 - 32069062
Alignment:
Q  67 atctctagcaaaactcatttagctactatttaattgggaattagctgtcatatt 120  Q
    |||||||||||||| ||||||||||||| ||  |||||||||||||||||||||    
T  32069009 atctctagcaaaacacatttagctactactttgttgggaattagctgtcatatt 32069062  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 1096894 - 1096835
Alignment:
Q  60 gtagctaatctctagcaaaactcatttagctactatttaattgggaattagctgtcatatt 120  Q
    ||||||||| |||||||||||||||||| |||| ||||| ||| || ||||||||||||||    
T  1096894 gtagctaat-tctagcaaaactcatttacctaccatttagttgtgatttagctgtcatatt 1096835  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 7474593 - 7474545
Alignment:
Q  70 tctagcaaaactcatttagctactatttaattgggaattagctgtcata 118  Q
    ||||||||||||||||||||||||||||  ||| || ||||||||||||    
T  7474593 tctagcaaaactcatttagctactattttgttgtgatttagctgtcata 7474545  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 3877796 - 3877741
Alignment:
Q  65 taatctctagcaaaactcatttagctactatttaattgggaattagctgtcatatt 120  Q
    |||| ||||| |||||||||||||||||| ||| |||||||||||| || ||||||    
T  3877796 taatttctagtaaaactcatttagctactgttttattgggaattagttgccatatt 3877741  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 32069165 - 32069228
Alignment:
Q  154 gcaatatactggtcaaaaaattatatttccttgctatttagttaggatatttactcaataattt 217  Q
    |||||||||||  ||||| |||||||||||| |||| ||||||||||||||  | |||||||||    
T  32069165 gcaatatactgtacaaaagattatatttcctagctacttagttaggatattgccgcaataattt 32069228  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 12050987 - 12050929
Alignment:
Q  60 gtagctaatctctagcaaaactcatttagctactatttaattgggaattagctgtcata 118  Q
    |||||||||  |||||||||||||||||||||||||||| |||||||| ||||||||||    
T  12050987 gtagctaattcctagcaaaactcatttagctactatttagttgggaatcagctgtcata 12050929  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 23781410 - 23781368
Alignment:
Q  26 acaagaaaatcaatgatttgctacgaaaataatggtagctaat 68  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  23781410 acaagaaaatcaatgatatgctacgaaaataatggtagctaat 23781368  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 23868363 - 23868321
Alignment:
Q  26 acaagaaaatcaatgatttgctacgaaaataatggtagctaat 68  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  23868363 acaagaaaatcaatgatatgctacgaaaataatggtagctaat 23868321  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 31778587 - 31778643
Alignment:
Q  62 agctaatctctagcaaaactcatttagctactatttaattgggaattagctgtcata 118  Q
    ||||||| ||| |||||||||||||||||||  |||| ||| || ||||||||||||    
T  31778587 agctaatttcttgcaaaactcatttagctaccctttagttgtgatttagctgtcata 31778643  T

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Target: scaffold0351 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 2896 - 2944
Alignment:
Q  70 tctagcaaaactcatttagctactatttaattgggaattagctgtcata 118  Q
    ||||||||||||||||||||||||||||| ||| || ||||||||||||    
T  2896 tctagcaaaactcatttagctactatttagttgtgatttagctgtcata 2944  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 28052281 - 28052223
Alignment:
Q  60 gtagctaatctctagcaaaactcatttagctactatttaattgggaattagctgtcata 118  Q
    ||||||||| ||||||||||||||||||||||| ||||  ||| || ||||||||||||    
T  28052281 gtagctaatttctagcaaaactcatttagctaccatttggttgtgatttagctgtcata 28052223  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 30453424 - 30453360
Alignment:
Q  28 aagaaaatcaatgatttgctacgaaaataatggtagctaatctctagcaaaactcatttagctac 92  Q
    |||||||||| ||||||||||| |||  ||| ||||||||| |||||| ||||||||||| ||||    
T  30453424 aagaaaatcattgatttgctacaaaacaaatcgtagctaatttctagcgaaactcatttacctac 30453360  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 19841014 - 19840960
Alignment:
Q  62 agctaatctctagcaaaactcatttagctactatttaattgggaattagctgtca 116  Q
    ||||||| |||||||||||||||||| |||| ||||| ||| || ||||||||||    
T  19841014 agctaatttctagcaaaactcatttacctaccatttagttgtgatttagctgtca 19840960  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 27056854 - 27056911
Alignment:
Q  61 tagctaatctctagcaaaactcatttagctactatttaattgggaattagctgtcata 118  Q
    |||||||| |||||||||||||||||| |||| ||||| ||| || ||||||||||||    
T  27056854 tagctaatttctagcaaaactcatttacctaccatttagttgtgatttagctgtcata 27056911  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 1509462 - 1509518
Alignment:
Q  62 agctaatctctagcaaaactcatttagctactatttaattgggaattagctgtcata 118  Q
    ||||||| |||||||||||||||||||||||  |||| ||| || ||||||||||||    
T  1509462 agctaatttctagcaaaactcatttagctaccttttagttgtgatttagctgtcata 1509518  T

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