View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2787_low_27 (Length: 253)
Name: NF2787_low_27
Description: NF2787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2787_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 3255779 - 3256020
Alignment:
| Q |
1 |
tgctgacgcggaatataggtctatggcaactactacatgtgagttaaaatggttacaaaggatcctctccaacctaggagttgctaatgataagcccgtg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| || |
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| T |
3255779 |
tgctgacgcggaatataggtctatggcaactactacatgagagttaaaatggttacagaggatcctctccaacctaggagttgctaatgataaacccatg |
3255878 |
T |
|
| Q |
101 |
actattcactatgataatcttggcaaccttacacattgccaaaaatctcatgttccatgaacgtaccaaacacattgaagtagactgtcattttgttcag |
200 |
Q |
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|||||||||||||||| || ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
3255879 |
actattcactatgatagtcatggcagtcttacacattgccaaaaatcttgtgttccatgaacgtaccaaacacattgaagtagaccgtcattttgttcgg |
3255978 |
T |
|
| Q |
201 |
aaaaaagttctcaaaaacaatatatgtcccacttatatctct |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
3255979 |
aaaaaagttctcaaaaacaatatatgtcccacttatatctct |
3256020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 33159803 - 33160043
Alignment:
| Q |
1 |
tgctgacgcggaatataggtctatggcaactactacatgtgagttaaaatggttacaaaggatcctctccaacctaggagttgctaatgataagcccgtg |
100 |
Q |
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|||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||| ||||||| ||| || |
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| T |
33159803 |
tgctgaggcggaatataggtccatggcaactactacatgcgagttaaaatggttaaaggggatcctctccaacctaggagttgctcatgataaacccatg |
33159902 |
T |
|
| Q |
101 |
actattcactatgataatcttggcaaccttacacattgccaaaaatctcatgttccatgaacgtaccaaacacattgaagtagactgtcattttgttcag |
200 |
Q |
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| T |
33159903 |
attattcactgtgatagtc-aagcaaccttacacattgcgaaaaatcctgtgttccatgaacgtaccaagcacattgaagtggattgtcattttgttcgg |
33160001 |
T |
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| Q |
201 |
aaaaaagttctcaaaaacaatatatgtcccacttatatctct |
242 |
Q |
| |
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| T |
33160002 |
aacgaagttctcaaaaacaatatatgtccgacttatgtctct |
33160043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 20642095 - 20642306
Alignment:
| Q |
11 |
gaatataggtctatggcaactactacatgtgagttaaaatggttacaaaggatcctctccaacctaggagttgctaatgataagcccgtgactattcact |
110 |
Q |
| |
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| T |
20642095 |
gaatatcggtctatggcaaccactacatgtgagttaaaatggttaaaagggattctttccaacctgggagttgttcatgataaaccaatgatcattcact |
20642194 |
T |
|
| Q |
111 |
atgataatcttggcaaccttacacattgccaaaaatctcatgttccatgaacgtaccaaacacattgaagtagactgtcattttgttcagaaaaaagttc |
210 |
Q |
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||| | || || | | |||||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||||| | || |||||| |
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| T |
20642195 |
gtgacagtc-aagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgtccgaaatgaagttc |
20642293 |
T |
|
| Q |
211 |
tcaaaaacaatat |
223 |
Q |
| |
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||||||| ||||| |
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| T |
20642294 |
tcaaaaataatat |
20642306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 52795114 - 52794903
Alignment:
| Q |
11 |
gaatataggtctatggcaactactacatgtgagttaaaatggttacaaaggatcctctccaacctaggagttgctaatgataagcccgtgactattcact |
110 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||| || |||| || |||||||| ||||||| | ||||||| || ||| ||||||| |
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| T |
52795114 |
gaatatcggtctatggcaaacactacatgtgagttaaaatggttaaaagggattctttccaacctgggagttgttcatgataaaccaatgatcattcact |
52795015 |
T |
|
| Q |
111 |
atgataatcttggcaaccttacacattgccaaaaatctcatgttccatgaacgtaccaaacacattgaagtagactgtcattttgttcagaaaaaagttc |
210 |
Q |
| |
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||| | || | | | | |||||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||||| | ||| |||||| |
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| T |
52795014 |
gtgacagtcaag-cggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgtccggaatgaagttc |
52794916 |
T |
|
| Q |
211 |
tcaaaaacaatat |
223 |
Q |
| |
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||||||| ||||| |
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| T |
52794915 |
tcaaaaataatat |
52794903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 6383922 - 6383988
Alignment:
| Q |
132 |
cacattgccaaaaatctcatgttccatgaacgtaccaaacacattgaagtagactgtcattttgttc |
198 |
Q |
| |
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|||||||| || |||| | | ||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
6383922 |
cacattgcaaagaatcccgtcttccatgaacgtaccaaacacattgaagtggactgtcatttcgttc |
6383988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 198
Target Start/End: Complemental strand, 1617830 - 1617764
Alignment:
| Q |
132 |
cacattgccaaaaatctcatgttccatgaacgtaccaaacacattgaagtagactgtcattttgttc |
198 |
Q |
| |
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|||||||| || |||| | | ||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
1617830 |
cacattgcaaagaatcccgtcttccatgaacgtaccaaacacattgaagtggactgtcatttcgttc |
1617764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 29695708 - 29695753
Alignment:
| Q |
151 |
tgttccatgaacgtaccaaacacattgaagtagactgtcattttgt |
196 |
Q |
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||||||||||||| || |||||||||||||| || ||||||||||| |
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| T |
29695708 |
tgttccatgaacgcactaaacacattgaagtcgattgtcattttgt |
29695753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 42573863 - 42573929
Alignment:
| Q |
132 |
cacattgccaaaaatctcatgttccatgaacgtaccaaacacattgaagtagactgtcattttgttc |
198 |
Q |
| |
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|||||||| || |||| | | ||||||||||||||||||||||||||| | ||||||||||| |||| |
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| T |
42573863 |
cacattgcaaagaatcccgtcttccatgaacgtaccaaacacattgaattggactgtcatttcgttc |
42573929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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