View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2787_low_29 (Length: 250)
Name: NF2787_low_29
Description: NF2787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2787_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 53 - 244
Target Start/End: Complemental strand, 39445292 - 39445101
Alignment:
| Q |
53 |
aaaaatgttgatgatataattttcttgaaatttttctttagcagatgtatttggtttcatcactctttgcggcaacaacaatggatgtaatgccacagct |
152 |
Q |
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| T |
39445292 |
aaaaatgttgataatataattttcttgaaatttttctttaggtgctgtatttggtttcatcactctttgcggcaacaacaatggatgtaatgccactgct |
39445193 |
T |
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| Q |
153 |
aacaaaacttcaaaatcaaaaaagtattgttataagaagccctaatacgccaaaatcaatttccctattcatcttcaaaacatgattaaaag |
244 |
Q |
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| T |
39445192 |
aacaaaatttcaaaataaaaaaagtattgttataagaagccctaatccgccaaaatcaatttccctattcatcttcaaaacatgattaaaag |
39445101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 39446140 - 39446083
Alignment:
| Q |
1 |
ttatttccaatgtcaagttctatttaatttaattcaatcctccagtatatagaaaaat |
58 |
Q |
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| T |
39446140 |
ttatttccaatgtcaagttctatttaatttaattcaatcctccaatatatagaaaaat |
39446083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 35314900 - 35314772
Alignment:
| Q |
7 |
ccaatgtcaagttctatttaatttaat-tcaatcctccagtatatagaaaaatgttgatgatataattttcttgaaatttttctttagcagatgtatttg |
105 |
Q |
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| T |
35314900 |
ccaatgtaaaattctatttaatttaatatcaattctctaatattta-aaaaatgttgataatataattttctttgaatttttctttagcagctgtattta |
35314802 |
T |
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| Q |
106 |
gtttcatcactctttgcggcaacaacaatg |
135 |
Q |
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| T |
35314801 |
gtttcatcactctatgtggcaacaataatg |
35314772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 35315832 - 35315621
Alignment:
| Q |
11 |
tgtcaagttctatttaatttaat-tcaatcctccagtatatagaaaaatgttgatgatataattttcttgaaatttttctttagcagatgtatttggttt |
109 |
Q |
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| T |
35315832 |
tgtcaaattctatttaatttaatatcaatcctccaatatttaaaaaaatgttgataatata------------tttttctttagcaactatatttggttt |
35315745 |
T |
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| Q |
110 |
catcactctttgcggcaacaacaatggatgtaatgccacagctaacaaaacttcaaaatcaaaaaagtattgttataagaagccctaatacgccaaaatc |
209 |
Q |
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| T |
35315744 |
caccgctcttagtagcaacaacaatgcatgcaatatcggtgctaacaaaatttcaaagtcgaacaagcattgttataagaaaccctaaccctccaaaatg |
35315645 |
T |
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| Q |
210 |
aatttccctattcatcttcaaaac |
233 |
Q |
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| T |
35315644 |
aatctccctatttatcttaaaaac |
35315621 |
T |
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