View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2787_low_3 (Length: 450)
Name: NF2787_low_3
Description: NF2787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2787_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 376
Target Start/End: Complemental strand, 47077616 - 47077252
Alignment:
| Q |
13 |
cagataggagaagggaaatgaaaaggctgcagtgaaggatatattaagctgaataggagaaggactatagaggagagtattacatcaacaacaacaagta |
112 |
Q |
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| T |
47077616 |
cagataggggaagggaaatgaaaaggctgcagtgaaggatatattaagctgaataggagaaggactatagaggagagtattacatcaacaacaacaagta |
47077517 |
T |
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| Q |
113 |
cattattatcacattttttggaaaatgcgatcataagaatttaagtgtatgtaacttagtaagagtccaaacactactcagccacgtgaacggatattgc |
212 |
Q |
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| T |
47077516 |
cattattatcacattttttggaaaatgcgatcataagaatttaagtgtatgtaaattagtaagagtccaaacactactcagccacgtgaacggatattgc |
47077417 |
T |
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| Q |
213 |
gggataagcctatgattaatgtctatgtcttacag-nnnnnnntagtatggatgattttgtttgtagtaaatttgttactcaattggaaaaataatagac |
311 |
Q |
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| T |
47077416 |
gggataagcctatgattaatgtctatgtcttacagaaaaaaaatagtatggatgattttgtttgtagtaaatttgttactgaattggaaaaataatagac |
47077317 |
T |
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| Q |
312 |
caagctagtcacatatttttctaatttacctatattattcaccacttgtaattttgtgaactgtg |
376 |
Q |
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| T |
47077316 |
caagctagtcacatatttttccaatttacctatattattcaccacttgtaattttgtgaactgtg |
47077252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 435
Target Start/End: Complemental strand, 47077251 - 47077209
Alignment:
| Q |
394 |
acttagcttgttgt-cccttagaaagtagaaaatggtgaatac |
435 |
Q |
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| T |
47077251 |
acttagcttgttgttcccttagaaagtagaaaatggtgaatac |
47077209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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