View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2787_low_30 (Length: 250)
Name: NF2787_low_30
Description: NF2787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2787_low_30 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 49732050 - 49732295
Alignment:
| Q |
11 |
cacagatagcaacacgacattcaaaatgcatgtgaagttaatatggcctaatatatcaatgactcagcataattcaaaataggcctaacattagatacta |
110 |
Q |
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| T |
49732050 |
cacagatagcaacacgacattcaaaatgcatgtgaagttaatatggcctaatatatcaatgactcagcataattcaaaataggcctaacattagatacta |
49732149 |
T |
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| Q |
111 |
attataacgacttctgacaagaaccgctggttaattataattgtacttgttagccaaaatgaaaaataacacaggcgttgttaaagagttttgaatcata |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49732150 |
attataacgacttctgacaagaaccgctggttaattataattgtacttgttagccaaaatgaaaaataacacaggcgttgttaaagagttttgaatcata |
49732249 |
T |
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| Q |
211 |
gagcaagatgct------ttgtaccaccacttcacggttgagttct |
250 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |
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| T |
49732250 |
gagcaagatgctttgtagttgtaccaccacttcacggttgagttct |
49732295 |
T |
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