View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2787_low_32 (Length: 240)
Name: NF2787_low_32
Description: NF2787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2787_low_32 |
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| [»] scaffold1211 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 26376798 - 26376589
Alignment:
| Q |
13 |
aaaatcaattgatgatctaacaacagaaaatcaccattagcggtgaatttcatgttttccatcataacaatgaaagaccaacaataaaaatgaaacaata |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26376798 |
aaaatcaattgatgatctaacaacagaaaatcaccattagcggtgaatttcatgttttccatcataacaatgaaagaccagcaataaaaatgaaacaata |
26376699 |
T |
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| Q |
113 |
aatagtttgctgttaataaaagtgaatctgtaagtaccatagtatgtattggacgtcgggctcaattctatcattcttgcctcaaccttttctttgagtg |
212 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26376698 |
aatagtttgctgttaataaaaatgaatctgtaagtaccatagtatgtattggacgtcgggctcaattctatcattcttgcctcaaccttttctttgagtg |
26376599 |
T |
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| Q |
213 |
catgccaaac |
222 |
Q |
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|||||||||| |
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| T |
26376598 |
catgccaaac |
26376589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1211 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold1211
Description:
Target: scaffold1211; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 765 - 556
Alignment:
| Q |
13 |
aaaatcaattgatgatctaacaacagaaaatcaccattagcggtgaatttcatgttttccatcataacaatgaaagaccaacaataaaaatgaaacaata |
112 |
Q |
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||||||| ||||||||||||||||||||||| | |||||| ||||||| |||||||||||| | |||| |||||| ||||||||||||||||||| | |
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| T |
765 |
aaaatcagttgatgatctaacaacagaaaattatcattagttttgaatttgatgttttccatcgttacaaagaaagatcaacaataaaaatgaaacatga |
666 |
T |
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| Q |
113 |
aatagtttgctgttaataaaagtgaatctgtaagtaccatagtatgtattggacgtcgggctcaattctatcattcttgcctcaaccttttctttgagtg |
212 |
Q |
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||| ||||||||| || ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
665 |
tataatttgctgttcatgaaaataaatctgtaagtaccatagtatgtattggacgtcgggctcaattctatcatccttgcctcaaccttttctttgagcg |
566 |
T |
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| Q |
213 |
catgccaaac |
222 |
Q |
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|||||||||| |
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| T |
565 |
catgccaaac |
556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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