View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2787_low_38 (Length: 201)
Name: NF2787_low_38
Description: NF2787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2787_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 43855974 - 43855797
Alignment:
| Q |
1 |
agtgtgccaatagcaaattgaaaagcagtgagagtgactggtaaatggtaaaccttcaagacctgtttgttgtagatgttaaagtagatgttaaaggaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43855974 |
agtgtgccaatagcaaattgaaaagcagtgagagttactggtaaatggtaaaccttcaagacctgtttgttgtagatgttaaagtagatgttaaaggaga |
43855875 |
T |
|
| Q |
101 |
accagaggcaaaaaagaactccaagctctagagctttgaagagagggctactgctgtcggaggagtcggcggcgtcga |
178 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
43855874 |
accagaggcaaaaaagaactccaagctctagagctttgaatagaggactactgctgtcggaggagtcggcggcgtcga |
43855797 |
T |
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