View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2787_low_4 (Length: 448)
Name: NF2787_low_4
Description: NF2787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2787_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 39516563 - 39516143
Alignment:
| Q |
11 |
cagagaggtgcagtacatagagaacctcatgaggatagttctagcagtgcttctgtatcaattcaattgcctaatgttcgccgtttgccttctctgtcta |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39516563 |
cagagaggtgcagtacatagagaacctcatgaggatagttctagcagtgcttctgtatcaattcaattgcctaatgttcgccgtttgccttctctgtcta |
39516464 |
T |
|
| Q |
111 |
cactgagtgaaggggatgacacgtctatgtctattggtagagttattgatgaatctgatagtgcagcggattctgttttctctcagttgaaaatagatga |
210 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39516463 |
cactgagtgaaggggatgacacgtctatgtctattggtagagttattgatgaatctgatagtgcagcagattctgttttctctcagttgaaaatagatga |
39516364 |
T |
|
| Q |
211 |
tgctagatagattttcatgttttctcacaagtgtctcaagtaagtggaggagctgtttttattagatggctcacttccctcttttgtccttgtttccttg |
310 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39516363 |
tgctagatagatattcatgttttctcacaagtgtctcaagtaagtggaggagctgtttttattagatggctcacttccctcttttgtccttgtttccttg |
39516264 |
T |
|
| Q |
311 |
tatttttcatacttagttatggttgttggtctattcttaatcgtaagactaatgatgatgtctatttctgatgattgcaataaactattggtaattaggt |
410 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||| | |
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| T |
39516263 |
tatttttcatacttggttatggttgttggtctattcttaattgtaagactaatgatgatttctatttttgatgattgcaataaaccattggtaattagct |
39516164 |
T |
|
| Q |
411 |
gcattatatacatcacttatt |
431 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
39516163 |
gcattatatacatcacttatt |
39516143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 39509495 - 39509276
Alignment:
| Q |
11 |
cagagaggtgcagtacatagagaacctcatgaggatagttctagcagtgcttctgtatcaattcaattgcctaatgttcgccgtttgccttctctgtcta |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||| || |
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| T |
39509495 |
cagagaggtgcagtacatagagaacctcatgaggatagttctaacagtgcttctgtatcaattcaattgcccaatgttcgccgtttaccttctctgaata |
39509396 |
T |
|
| Q |
111 |
cactgagtgaaggggatgacacgtctatgtctattggtagagttattgatgaatctgatagtgcagcggattctgttttctctcagttgaaaatagatga |
210 |
Q |
| |
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|||||||||||| |||||| | ||||||||||||| || ||||||||||||||||||||||| | | |||||||||||||| ||||||| | ||||| |
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| T |
39509395 |
cactgagtgaagtggatgatatgtctatgtctattttgagggttattgatgaatctgatagtgctgggcattctgttttctctgagttgaaccttgatga |
39509296 |
T |
|
| Q |
211 |
tgctagatagattttcatgt |
230 |
Q |
| |
|
||| |||||||||||||||| |
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| T |
39509295 |
tgccagatagattttcatgt |
39509276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 39574392 - 39574284
Alignment:
| Q |
29 |
agagaacctcatgaggatagttctagcagtgcttctgtatcaattcaattgcctaatgttcgccgtttgccttctctgtctacactgagtgaaggggatg |
128 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| || |||| |||||||||||||||||| | ||| |||||||||||||||| || ||||| ||||| |
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| T |
39574392 |
agagaaccgcatgaggatagttctagcagtgcttttgcatcacttcaattgcctaatgttcagcatttaccttctctgtctacaccgactgaagtggatg |
39574293 |
T |
|
| Q |
129 |
acacgtcta |
137 |
Q |
| |
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|||||||| |
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| T |
39574292 |
gcacgtcta |
39574284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 39578925 - 39578817
Alignment:
| Q |
29 |
agagaacctcatgaggatagttctagcagtgcttctgtatcaattcaattgcctaatgttcgccgtttgccttctctgtctacactgagtgaaggggatg |
128 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| || |||| |||||||||||||||||| ||||| |||||||||||||| |||| | ||| ||||| |
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| T |
39578925 |
agagaaccacatgaggatagttctagcagtgcttttgcatcacttcaattgcctaatgttcagcgtttaccttctctgtctaccctgactaaagtggatg |
39578826 |
T |
|
| Q |
129 |
acacgtcta |
137 |
Q |
| |
|
|||||||| |
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|
| T |
39578825 |
gcacgtcta |
39578817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 39542543 - 39542449
Alignment:
| Q |
43 |
ggatagttctagcagtgcttctgtatcaattcaattgcctaatgttcgccgtttgccttctctgtctacactgagtgaaggggatgacacgtcta |
137 |
Q |
| |
|
|||||||||||||||||||| || ||| |||||||||||||||||| ||||| |||||||||||| |||||| ||||| ||||| |||||||| |
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| T |
39542543 |
ggatagttctagcagtgcttttgcgtcacttcaattgcctaatgttcagcgtttaccttctctgtctgcactgactgaagtggatggcacgtcta |
39542449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 39509245 - 39509197
Alignment:
| Q |
238 |
caagtgtctcaagtaagtggaggagctgtttttattagatggctcactt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
39509245 |
caagtgtctcaagtaagtggaggagctgtttttattagatggctgactt |
39509197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 422
Target Start/End: Complemental strand, 39509070 - 39508912
Alignment:
| Q |
277 |
tggctcacttccctcttttgtccttgtttccttgtattttt-catacttag---ttatggttgttggtctattcttaatcgtaagacta---------at |
363 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||| ||| ||||| |||| |||| ||||||||||| ||| |||| | || || |
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| T |
39509070 |
tggctcacttatctgttttgtccttgtttccttgtatttttacatccttagttattatcgttgctggtctattctaaattgtaaaattattattgatgat |
39508971 |
T |
|
| Q |
364 |
gatgatgtctatttctgatgattgcaataaactattggtaattaggtgcattatataca |
422 |
Q |
| |
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|||| ||| ||||| ||||| ||| |||||| | |||||||||| |||||||||||||| |
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| T |
39508970 |
gatgctgtatatttttgatgcttgaaataaattgttggtaattatgtgcattatataca |
39508912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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