View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2787_low_6 (Length: 436)
Name: NF2787_low_6
Description: NF2787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2787_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 110 - 421
Target Start/End: Original strand, 2101063 - 2101395
Alignment:
| Q |
110 |
atgtgtagaaggattagtctatactttagaatataatgtctgatacgt----------------cagtatactgaccatagtctatgctcatcagtcacc |
193 |
Q |
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| T |
2101063 |
atgtgtagaaggattggtctatactttagaatataatgtctgatacgttgtagactgttgtaaacagtatactgaccatagtctatgctcatcagtcacc |
2101162 |
T |
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| Q |
194 |
tttgtagtattttatatgaatgacaca--ttatcacacaggttcttt-acttaaaa--agcatctaaacggataagatttactgtagactgtaataaatc |
288 |
Q |
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| T |
2101163 |
tttgtagtatcttatatgaatgacacacattatcacacaacttcttttacttaaaaaaagcatctaaacggataagatttactgtagactgtaataaatc |
2101262 |
T |
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| Q |
289 |
tgtagtttgtggtaataaatctgtaaccgtggcagtttacttttcaatcttcttcaataagtctcttcattttacttttgcattaaaaacggaaaataag |
388 |
Q |
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| T |
2101263 |
tgtagtttgtggtaataaatctgtaaccgtggcagtttacttttcaatcttcttcgataagtctcttcattttacttttgcattaaaaacggaaaataag |
2101362 |
T |
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| Q |
389 |
agatattttcttgctaaaacgattctaatatct |
421 |
Q |
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| T |
2101363 |
acatattttcttgctaaaacgattctaatatct |
2101395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 2100895 - 2100997
Alignment:
| Q |
11 |
atatttgatttacgtacaaaaatattcaatgtctaatatcctgtaaattgtagcatacaatatacaaaccattcaatcattctagtcttcaatgattgaa |
110 |
Q |
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| T |
2100895 |
atatttggtttacatacaaaaatattgaacgtctgatatgctggaaattgtagcatacaatatacaaacgattcaatcattgttgtcttcaatgattgaa |
2100994 |
T |
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| Q |
111 |
tgt |
113 |
Q |
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||| |
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| T |
2100995 |
tgt |
2100997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 170 - 275
Target Start/End: Complemental strand, 39186883 - 39186777
Alignment:
| Q |
170 |
catagtctatgctcatcagtcacctttgtagtattttatatgaatgacacattatcacacaggttc-tttactt-aaaaagcatctaaacggataagatt |
267 |
Q |
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| T |
39186883 |
catagtctatgctcatgagtcacctttgcagtatcttat-tgaatgacacagtatcacacaagttcttttacttaaaaaagaatctaaacagataggatt |
39186785 |
T |
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| Q |
268 |
tactgtag |
275 |
Q |
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| T |
39186784 |
tactgtag |
39186777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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