View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2787_low_8 (Length: 394)
Name: NF2787_low_8
Description: NF2787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2787_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 11 - 377
Target Start/End: Original strand, 9658541 - 9658907
Alignment:
| Q |
11 |
gtgatatgaagaacctgaatcaagatactgagcatctgaattacctaattccgagcttgttgtcaccatcagcaactatacgagtctgaatcattttctt |
110 |
Q |
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| T |
9658541 |
gtgatatgaagaacctgagtcaagataccaagtatctgaattacctaattccgagcttgttgtcaccatcagcaactatacgagtctgaatcattttctt |
9658640 |
T |
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| Q |
111 |
gagccatatttgcttcattatttgatcacttttgaacattcttcttttgatagcattcactagcaaaatgacaaaacttattgcaattaaagcaatgtat |
210 |
Q |
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| T |
9658641 |
gagccatatttgcttcattatttgatcacttttgaacattcttcttttgatagaattcgctagcaaaatgacaaaacttattgcaattaaagcaatgtat |
9658740 |
T |
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| Q |
211 |
cttactcttatcccagttcttcttctttaaatggtaattcttgttggcttgtgataatgattcagcatgatcttgattcttgaaatttactgctccttca |
310 |
Q |
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| T |
9658741 |
cttactcttatcccagttcttcttctttgaatggtaattcttgttggcttgtgataatgattcagcatgatcttgattcttgaaatttactgctccttca |
9658840 |
T |
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| Q |
311 |
gtcttgttccgagacatttttcctttgtgtttcttgcctttccatttctcaccctttttcttcattg |
377 |
Q |
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| T |
9658841 |
gtcttgttccgagacatttttcctttgtgtttcttgcctttccatttctcaccctttttcttcattg |
9658907 |
T |
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