View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2788_high_1 (Length: 518)
Name: NF2788_high_1
Description: NF2788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2788_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 1 - 501
Target Start/End: Complemental strand, 36893126 - 36892625
Alignment:
| Q |
1 |
acaaggcttttgatgtactgctccaatttaacataaataaaaaataatcacatggatcaacttgtacaaacattttcacttggaagagataaagattata |
100 |
Q |
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| T |
36893126 |
acaaggcttttgatgtactgctccaatttaacataaataaaaaataatcacatggatcaacttgtacaaacattttcacttggaagagataaagattata |
36893027 |
T |
|
| Q |
101 |
ca-ttttatgtacctgaaaccattttatatcccacatcatttgcaaggcagaaccagcaatctgccaaggtttatcaccacctaatgcctctgctgccaa |
199 |
Q |
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| T |
36893026 |
caattttatgtacctgaaaccattttatatcccacatcatttgcaaggcagaaccagcaatctgccaaggtttatcaccacctaatgcctcggctgccaa |
36892927 |
T |
|
| Q |
200 |
atgcaatactgtattctcatcctcatccattgcaagaatcaaattattccaaagttctggttttgaatgcttaatcattctcaaggtctcaacaataaga |
299 |
Q |
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| T |
36892926 |
atgcaatactgtattctcatcctcatccattgcaagaatcaaattattccaaagttctggttttgaatgcttaatcattctcaaggtctcaacaataaga |
36892827 |
T |
|
| Q |
300 |
ggttgcctgtatttgactgcaacaagcaatacattttcttttcttgaggtagtgttatgaatggcacttggtatttttattagaatttcgttaaccattt |
399 |
Q |
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| T |
36892826 |
ggttgcctgtatttgactgcaacaagcaatacattttcttttcttgaggtagtgttatgaatggcacttggtacttttattagaatttcgttaaccattt |
36892727 |
T |
|
| Q |
400 |
caactattccattttttgctgcaaccaaaaatggtgtcatctttttcttgatttccttttcattgtccttctttatttcatttggacttgatgttatttc |
499 |
Q |
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| T |
36892726 |
caactattccattttttgctgcaaccaaaaatggtgtcatctttttcttgatttccttttcattttccttctttatttcatttggacttgatgttatttc |
36892627 |
T |
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| Q |
500 |
ct |
501 |
Q |
| |
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|| |
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| T |
36892626 |
ct |
36892625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 106 - 437
Target Start/End: Complemental strand, 36881936 - 36881599
Alignment:
| Q |
106 |
tatgtacctgaaaccattttatatcccacatcatttgcaaggcagaaccagcaatctgccaaggtttatcaccacctaatgcctctgctgccaaatgcaa |
205 |
Q |
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| T |
36881936 |
tatgtacctgaaaccattttatatcccacatcatttgtaaggcagaaccagcaatctgccaaggtttaccatcacctagtgcctttgctgccaaatgcaa |
36881837 |
T |
|
| Q |
206 |
tactgtattctcatcctcatccattgcaagaatcaaattattccaaagttctggttttgaatgcttaatcatt------ctcaaggtctcaacaataaga |
299 |
Q |
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| T |
36881836 |
tattgtattctcctccttatccattgcaagaattaagttattccaaagttctggttttgagtgcttaatcattctcattctcaatgtctcaacaataacg |
36881737 |
T |
|
| Q |
300 |
ggttgcctgtatttgactgcaacaagcaatacattttcttttcttgaggtagtgttatgaatggcacttggtatttttattagaatttcgttaaccattt |
399 |
Q |
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| T |
36881736 |
ggttgtcttgacttcactgcaacatgcaatacattttctttccttgagtttgtgtcatgaatggcacttggaattttgtctagaaattcgttaaccagtt |
36881637 |
T |
|
| Q |
400 |
caactattccattttttgctgcaaccaaaaatggtgtc |
437 |
Q |
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| T |
36881636 |
caactattccatttttcgctgcaaccaaaaatggtgtc |
36881599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 106 - 255
Target Start/End: Complemental strand, 36902141 - 36901989
Alignment:
| Q |
106 |
tatgtacctgaaaccattttatatcccacatcatttgcaaggcagaaccagcaat---ctgccaaggtttatcaccacctaatgcctctgctgccaaatg |
202 |
Q |
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| T |
36902141 |
tatgtacctgaaaccatttcatatcccacatcatttgtaatgcagacctagcaatattctgtccaggtttatcaacagcttgtgcctctgctgccaaatg |
36902042 |
T |
|
| Q |
203 |
caatactgtattctcatcctcatccattgcaagaatcaaattattccaaagtt |
255 |
Q |
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||||| |||||||| | |||||| ||||||||| ||| |||||||||||| |
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| T |
36902041 |
caatattgtattctgcttatcatcctttgcaagaaccaagctattccaaagtt |
36901989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 305 - 435
Target Start/End: Complemental strand, 36901846 - 36901716
Alignment:
| Q |
305 |
cctgtatttgactgcaacaagcaatacattttcttttcttgaggtagtgttatgaatggcacttggtatttttattagaatttcgttaaccatttcaact |
404 |
Q |
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|||||||| |||||||||||||||||||||| ||| |||||| |||| || | | |||| ||||| || ||||||||||| || ||||||||| | |
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| T |
36901846 |
cctgtattctactgcaacaagcaatacattttgtttgcttgagttagtactacggagggcagttggtgcttcgattagaatttctttcaccatttcatat |
36901747 |
T |
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| Q |
405 |
attccattttttgctgcaaccaaaaatggtg |
435 |
Q |
| |
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|| |||||| | ||||||||||||| ||||| |
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| T |
36901746 |
atgccatttctagctgcaaccaaaattggtg |
36901716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 23278879 - 23278833
Alignment:
| Q |
110 |
tacctgaaaccattttatatcccacatcatttgcaaggcagaaccag |
156 |
Q |
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| T |
23278879 |
tacctgaaaccattttatatgccacatcatttgcaaggcagcaccag |
23278833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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