View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2788_high_4 (Length: 357)

Name: NF2788_high_4
Description: NF2788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2788_high_4
NF2788_high_4
[»] chr3 (15 HSPs)
chr3 (16-215)||(8349969-8350169)
chr3 (16-164)||(8252867-8253015)
chr3 (77-179)||(8260574-8260676)
chr3 (81-153)||(8352758-8352830)
chr3 (279-324)||(8349624-8349669)
chr3 (77-168)||(8265551-8265642)
chr3 (93-167)||(8334018-8334093)
chr3 (77-139)||(8356339-8356401)
chr3 (77-168)||(8258478-8258569)
chr3 (18-77)||(8356419-8356478)
chr3 (16-70)||(8334134-8334188)
chr3 (26-72)||(8258592-8258638)
chr3 (27-77)||(8360592-8360642)
chr3 (18-77)||(8352852-8352911)
chr3 (77-136)||(8360515-8360574)
[»] chr1 (1 HSPs)
chr1 (289-357)||(44799682-44799750)


Alignment Details
Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 8350169 - 8349969
Alignment:
Q  16 gttttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcatgtcaagagaaatcaaagaggaaggaaaaatcaaagggagctcc 115  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8350169 gttttggtccttcttcaaactcatcttctcaagtttctgataatgctgaaaattcatgtcaagagaaatcaaagaggaaggaaaaatcaaagggagctcc 8350070  T
Q  116 gattgtagtttcttatttccctgttaactattatccctcgcgcttgtagtcatgtagtattaatttacatctgctactt-atcaagaagagtgtaatcaa 214  Q
     ||| |||||||||||||||||||||||||||||||||| |||||||||||||| | | |||||||||||||||||||| || |  ||||||||||||||    
T  8350069 aattatagtttcttatttccctgttaactattatccctcacgcttgtagtcatgcaatgttaatttacatctgctacttaattatcaagagtgtaatcaa 8349970  T
Q  215 c 215  Q
    |    
T  8349969 c 8349969  T

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Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 8253015 - 8252867
Alignment:
Q  16 gttttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcatgtcaagagaaatcaaagaggaaggaaaaatcaaagggagctcc 115  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8253015 gttttggtccttcttcaaactcatcttctcaagtttctgataatgctgaaaattcatgtcaagagaaaccaaagaggaaggaaaaatcaaagggagctcc 8252916  T
Q  116 gattgtagtttcttatttccctgttaactattatccctcgcgcttgtag 164  Q
     |||| ||||||||||||| |||||||| ||| || ||| |||||||||    
T  8252915 aattgcagtttcttatttctctgttaacaattgtctctcacgcttgtag 8252867  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 77 - 179
Target Start/End: Complemental strand, 8260676 - 8260574
Alignment:
Q  77 agagaaatcaaagaggaaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgcttgtagtcatgtagtatt 176  Q
    |||||||  |||||| || |||||||||||| ||||||| |||||||||||||||||||||||||||| ||||| ||| || ||||||||||| ||||||    
T  8260676 agagaaacaaaagagcaaagaaaaatcaaagagagctccaattgtagtttcttatttccctgttaactcttatctctcacgtttgtagtcatgcagtatt 8260577  T
Q  177 aat 179  Q
    |||    
T  8260576 aat 8260574  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 8352830 - 8352758
Alignment:
Q  81 aaatcaaagaggaaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccct 153  Q
    |||| |||||| ||||||||||| || |||||| | |||||||||||||||||||||||||||||||||||||    
T  8352830 aaattaaagagaaaggaaaaatctaatggagcttcaattgtagtttcttatttccctgttaactattatccct 8352758  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 8349669 - 8349624
Alignment:
Q  279 ttcaatgattggttgcttgcggcacaagaatctggttcagcttaaa 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8349669 ttcaatgattggttgcttgcggcacaagaatctggttcagcttaaa 8349624  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 77 - 168
Target Start/End: Complemental strand, 8265642 - 8265551
Alignment:
Q  77 agagaaatcaaagaggaaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgcttgtagtcat 168  Q
    |||||||  |||||| ||||||||||||||||||||||| |||||||| | | ||||||||| ||||| ||||| ||| || ||||||||||    
T  8265642 agagaaacaaaagagtaaggaaaaatcaaagggagctccaattgtagtatatcatttccctgctaactcttatctctctcgtttgtagtcat 8265551  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 8334093 - 8334018
Alignment:
Q  93 aaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattat-ccctcgcgcttgtagtca 167  Q
    |||||||||||||| |||| ||| |||||||||||||||||||  |||||||||||| ||||| ||||||||||||    
T  8334093 aaggaaaaatcaaaaggagttccaattgtagtttcttatttcctcgttaactattatcccctcacgcttgtagtca 8334018  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 8356401 - 8356339
Alignment:
Q  77 agagaaatcaaagaggaaggaaaaatcaaagggagctccgattgtagtttcttatttccctgt 139  Q
    ||||||| ||||||| ||||||||||||| ||||||||| ||||||||| |||||||||||||    
T  8356401 agagaaaccaaagagcaaggaaaaatcaatgggagctccaattgtagttccttatttccctgt 8356339  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 168
Target Start/End: Complemental strand, 8258569 - 8258478
Alignment:
Q  77 agagaaatcaaagaggaaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgcttgtagtcat 168  Q
    |||||||  |||||| ||||||||||||||||||||||| |||||||| | | ||||||||  ||||| ||||| ||| || ||||||||||    
T  8258569 agagaaacaaaagagtaaggaaaaatcaaagggagctccaattgtagtatatcatttccctactaactcttatctctcacgtttgtagtcat 8258478  T

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Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 8356478 - 8356419
Alignment:
Q  18 tttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcatgtcaa 77  Q
    |||||||  |||||||||||||||||||||||||||||| ||||| ||||||||| ||||    
T  8356478 tttggtctctcttcaaactcatcatctcaagtttctgattatgctcaaaattcatctcaa 8356419  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 8334188 - 8334134
Alignment:
Q  16 gttttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattc 70  Q
    ||||||||||||||||||||||||| || ||||||| ||| ||||||||||||||    
T  8334188 gttttggtccttcttcaaactcatcttcacaagtttatgagaatgctgaaaattc 8334134  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 8258638 - 8258592
Alignment:
Q  26 ttcttcaaactcatcatctcaagtttctgataatgctgaaaattcat 72  Q
    ||||||||||||||||||||||||||||||| ||| |||||| ||||    
T  8258638 ttcttcaaactcatcatctcaagtttctgattatgatgaaaaatcat 8258592  T

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Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 8360642 - 8360592
Alignment:
Q  27 tcttcaaactcatcatctcaagtttctgataatgctgaaaattcatgtcaa 77  Q
    |||||||||| ||||||||||||||||||| ||| ||||||||||| ||||    
T  8360642 tcttcaaacttatcatctcaagtttctgattatgttgaaaattcatctcaa 8360592  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 8352911 - 8352852
Alignment:
Q  18 tttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcatgtcaa 77  Q
    |||||||||||||| |||||||| |||||||||| |||| ||| |||||| |||| ||||    
T  8352911 tttggtccttcttcgaactcatcttctcaagtttatgattatgatgaaaaatcatctcaa 8352852  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 8360574 - 8360515
Alignment:
Q  77 agagaaatcaaagaggaaggaaaaatcaaagggagctccgattgtagtttcttatttccc 136  Q
    ||||||| ||||||  |||||||||||||  |||||||| ||||||||| ||||||||||    
T  8360574 agagaaaccaaagatcaaggaaaaatcaataggagctccaattgtagttacttatttccc 8360515  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 289 - 357
Target Start/End: Original strand, 44799682 - 44799750
Alignment:
Q  289 ggttgcttgcggcacaagaatctggttcagcttaaaggacagtgttgtgaagggaatgaactggttttg 357  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||    
T  44799682 ggttgcttgcggcacaagaatctggttcagcttaaagggtggtgttgtgaagggaatgaattggttttg 44799750  T

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