View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2788_high_6 (Length: 310)
Name: NF2788_high_6
Description: NF2788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2788_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 8 - 305
Target Start/End: Complemental strand, 36893400 - 36893103
Alignment:
| Q |
8 |
ggaggagcagagaccaataagtgaagaaatggcaaagacatcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtaca |
107 |
Q |
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| T |
36893400 |
ggagaagcagagaccgataagtgaagaaatggcaaagacatcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtaca |
36893301 |
T |
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| Q |
108 |
gcgcttgctgtggcaaaggaaacaccagctacaagggcagatacaacagagcaggattccgatgtgtcttttagccattcgctactgtcttttataagac |
207 |
Q |
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| T |
36893300 |
gcgcttgctgtggcaaaggaaacaccagctacaagggcagatacaacagagcaggattccgatgtgtcttttagccattcgctactgtcttttataagac |
36893201 |
T |
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| Q |
208 |
ctttgtgtgttttcttgaaaatttctcttgatgttttgccactgctgttgtttctgaaaatgaagtgttgtggcacaaggcttttgatgtactgctcc |
305 |
Q |
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| T |
36893200 |
ctttgtgtgttttcttgaaaatttctcttgatgttttgccactgctgttgtttctgaaaatgaagtgttgtggcacaaggcttttgatgtactgctcc |
36893103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 13 - 305
Target Start/End: Complemental strand, 36883392 - 36883100
Alignment:
| Q |
13 |
agcagagaccaataagtgaagaaatggcaaagacatcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtacagcgct |
112 |
Q |
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| T |
36883392 |
agcaaagaccgataagtgaagaaatggcaaaggcgtcaaatgcaggcttgccttctaatactggactgccttcatcggttgtgccgccaggtacttggct |
36883293 |
T |
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| Q |
113 |
tgctgtggcaaaggaaacaccagctacaagggcagatacaacagagcaggattccgatgtgtcttttagccattcgctactgtcttttataagacctttg |
212 |
Q |
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| T |
36883292 |
tgctgtggcaaaggaaacaccggctacaaggccagatacgacggagcaggattctgacgtgtcttttagccaactgctgctctcttgtataagattttcg |
36883193 |
T |
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| Q |
213 |
tgtgttttcttgaaaatttctcttgatgttttgccactgctgttgtttctgaaaatgaagtgttgtggcacaaggcttttgatgtactgctcc |
305 |
Q |
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|||||| ||||||||||||| |||||||||||||| || ||||| |||| || |||||||||||| |||||||||||||| ||||||||| |
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| T |
36883192 |
tgtgttgtcttgaaaatttcacttgatgttttgcccttgttgttgcttctaaagtagaagtgttgtggtacaaggcttttgatatactgctcc |
36883100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 305
Target Start/End: Complemental strand, 36903168 - 36902908
Alignment:
| Q |
42 |
aagacatcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtacagcgcttgctgtggcaaaggaaacaccagctacaa |
141 |
Q |
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||||||| ||||||||| |||||||||||||| |||||||| | ||||||| ||||||||||| || |||| ||||| |||||| ||||||| |||| |
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| T |
36903168 |
aagacattgaatgcaggattgccttctaatactggtctaccct---cagttgttccgccaggtactgcacttgttgtggtgaaggaagcaccagcgacaa |
36903072 |
T |
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| Q |
142 |
gggcagatacaacagagcaggattccgatgtgtcttttagccattcgctactgtcttttataagacctttgtgtgttttcttgaaaatttctcttgatgt |
241 |
Q |
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| || | |||||| |||||||| || | ||||| |||||||||||| | ||||||||||||||||||| |||| || |||||| || | | | ||| |
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| T |
36903071 |
gcgcggctacaaccgagcaggaatctgctgtgttttttagccattcattgctgtcttttataagaccttcatgtgattccttgaagatattttcagctgt |
36902972 |
T |
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| Q |
242 |
tttgccactgctgttgtttctgaaaatgaagtgttgtggcacaaggcttttgatgtactgctcc |
305 |
Q |
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|||||| || ||||| || | ||| ||||||| |||||||||||||||||| ||||||||| |
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| T |
36902971 |
tttgcctttgttgttgcttgtcaaatgtaagtgttctggcacaaggcttttgatatactgctcc |
36902908 |
T |
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