View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2788_low_6 (Length: 331)
Name: NF2788_low_6
Description: NF2788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2788_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 311
Target Start/End: Complemental strand, 8944911 - 8944611
Alignment:
| Q |
11 |
cacagattaaaaatagagacggaaaaattgaaattgatggaactagagatgaaagaaaacctcaacttcaatgcaaacagattctagttagacttttcat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8944911 |
cacagattaaaaatagagacggaaaaattgaaattgatggaactagagatgaaagaaaacctcaacttcaatgcaaacagattctagttagactcttcat |
8944812 |
T |
|
| Q |
111 |
ttctgcatcttcaaaaacataaactcaattagatataatcaaaggaaaccaccaaatttatccatgtaatttattgcgctttcaaatggtccatgagatt |
210 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8944811 |
ttctgcatcgtcaaaaacataaactcaattagatacaatgaaaggaaaccaccaaatgtatccatgtaatttattgcgctttcaaatggtccatgagatt |
8944712 |
T |
|
| Q |
211 |
atgaatatttcaaatacgcctcttactcggtgaaacattactcatatctatatttctgtcaaactttcatgttatcacgtttcgtttacatccttatatt |
310 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||| |||||||||| ||||||||||||||| |||| ||||||||| ||||||||||||||| |
|
|
| T |
8944711 |
atgaatattttaaatacgtctcttactcggtgaaacattgatcatatctatctttctgtcaaactttatcgttaacacgtttcgcttacatccttatatt |
8944612 |
T |
|
| Q |
311 |
t |
311 |
Q |
| |
|
| |
|
|
| T |
8944611 |
t |
8944611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 21685579 - 21685541
Alignment:
| Q |
27 |
agacggaaaaattgaaattgatggaactagagatgaaag |
65 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
21685579 |
agacagaaaaagtgaaattgatggaactagagatgaaag |
21685541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University