View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2788_low_8 (Length: 224)

Name: NF2788_low_8
Description: NF2788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2788_low_8
NF2788_low_8
[»] chr8 (5 HSPs)
chr8 (7-112)||(27789772-27789882)
chr8 (163-224)||(26951389-26951450)
chr8 (168-224)||(21276379-21276435)
chr8 (163-211)||(18150956-18151004)
chr8 (171-224)||(33324806-33324859)
[»] chr7 (5 HSPs)
chr7 (163-224)||(17852445-17852506)
chr7 (163-224)||(12129592-12129653)
chr7 (163-224)||(9451561-9451622)
chr7 (171-222)||(34881071-34881122)
chr7 (164-221)||(20528973-20529030)
[»] chr5 (4 HSPs)
chr5 (163-224)||(24275343-24275404)
chr5 (163-224)||(24386809-24386870)
chr5 (168-224)||(30304922-30304978)
chr5 (163-224)||(24870531-24870592)
[»] chr4 (6 HSPs)
chr4 (163-224)||(16889242-16889303)
chr4 (166-221)||(35097012-35097067)
chr4 (163-201)||(32881904-32881942)
chr4 (171-224)||(37856927-37856980)
chr4 (163-207)||(5124529-5124573)
chr4 (192-224)||(23059319-23059351)
[»] chr3 (7 HSPs)
chr3 (163-224)||(1017575-1017636)
chr3 (163-224)||(26730820-26730881)
chr3 (178-224)||(47703699-47703745)
chr3 (163-207)||(7579623-7579667)
chr3 (171-220)||(4525394-4525443)
chr3 (180-224)||(20223252-20223296)
chr3 (163-221)||(10346433-10346491)
[»] chr1 (8 HSPs)
chr1 (163-224)||(10395307-10395368)
chr1 (163-224)||(27877802-27877863)
chr1 (163-224)||(12539217-12539278)
chr1 (163-224)||(40610028-40610089)
chr1 (163-222)||(3601167-3601226)
chr1 (163-218)||(32544293-32544348)
chr1 (163-221)||(2114460-2114518)
chr1 (178-222)||(30652250-30652294)
[»] chr6 (4 HSPs)
chr6 (163-224)||(11657735-11657796)
chr6 (178-224)||(27862053-27862099)
chr6 (165-224)||(13104321-13104379)
chr6 (163-217)||(29021910-29021964)
[»] scaffold0010 (1 HSPs)
scaffold0010 (163-224)||(255315-255376)
[»] chr2 (3 HSPs)
chr2 (163-224)||(41315814-41315875)
chr2 (173-224)||(10977858-10977909)
chr2 (178-224)||(28589916-28589962)
[»] scaffold0445 (1 HSPs)
scaffold0445 (163-207)||(12650-12694)
[»] scaffold0151 (1 HSPs)
scaffold0151 (163-224)||(21300-21361)


Alignment Details
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 27789772 - 27789882
Alignment:
Q  7 cttttcttag-tttttatgaggtgtttgtttttgcggtagaattggctcaaacgtactatt----ggattaaagcaacaaaatgtagcttcttaatatca 101  Q
    |||||||||| ||||||||| ||| ||||||||| ||||||||||||| ||||||||||||    |||||||||||||||||||||||||||||||||||    
T  27789772 cttttcttagatttttatgatgtggttgtttttgtggtagaattggctgaaacgtactattaataggattaaagcaacaaaatgtagcttcttaatatca 27789871  T
Q  102 tgtagctactt 112  Q
    |||||||||||    
T  27789872 tgtagctactt 27789882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 26951389 - 26951450
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  26951389 gaaggaaatcattgcatttcattagataaaatatgccaaatacatgtaggtatatcatcaat 26951450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 21276379 - 21276435
Alignment:
Q  168 aaatcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    ||||||||| |||||||||| ||||||||||||||||| ||||| ||||||||||||    
T  21276379 aaatcattgcatttcattagctaaaatatgccaaatacgtgtagatacatcatcaat 21276435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 18150956 - 18151004
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaaatacatgtag 211  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||||||    
T  18150956 gaaggaaatcattgcatttcattagataaaatatgctaaatacatgtag 18151004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 33324859 - 33324806
Alignment:
Q  171 tcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    |||||| |||| ||||  ||||||||| ||||||||| ||||||||||||||||    
T  33324859 tcattgcattttattaactaaaatatgtcaaatacatataggtacatcatcaat 33324806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 17852506 - 17852445
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17852506 gaagaaaatcattgcatttcattagataaaatatgccaaatacatgtaggtacatcatcaat 17852445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 12129653 - 12129592
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  12129653 gaagaaaatcattgcatttcattagataaaatatgtcaaatacatgtaggtacatcatcaat 12129592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 9451622 - 9451561
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    ||||||| | |||| |||||||||| ||||||||| ||||||||||||||||||||||||||    
T  9451622 gaagaaattaattgcatttcattaggtaaaatatgtcaaatacatgtaggtacatcatcaat 9451561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 34881122 - 34881071
Alignment:
Q  171 tcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatca 222  Q
    |||||| ||||||||||  |||||||||||||||||||||| ||||||||||    
T  34881122 tcattgcatttcattagcaaaaatatgccaaatacatgtagatacatcatca 34881071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 20528973 - 20529030
Alignment:
Q  164 aagaaaatcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatc 221  Q
    |||||| || |||||||||||||| |||||||| | ||||||||| ||||||||||||    
T  20528973 aagaaagtcgttgtatttcattagttaaaatattctaaatacatgaaggtacatcatc 20529030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 24275404 - 24275343
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  24275404 gaagaaaatcattgtatttcattagttaaaatatgccaaatacatgtaagtacatcatcaat 24275343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 24386809 - 24386870
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  24386809 gaagaaaatcattgtatttcattagttaaaatatgccaaatacatgtaagtacatcatcaat 24386870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 30304978 - 30304922
Alignment:
Q  168 aaatcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||    
T  30304978 aaatcattgcacttcattagataaaatatgccaaatacatgtaggtatatcatcaat 30304922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 24870592 - 24870531
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    |||||||||||||| |||||||||| ||||||||  |||||| |||||||||||||||||||    
T  24870592 gaagaaaatcattgcatttcattagctaaaatatatcaaatatatgtaggtacatcatcaat 24870531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 16889303 - 16889242
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  16889303 gaagaaaatcattgcatttcgttagataaaatatgccaaatacatgtaggtacatcatcaat 16889242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 35097067 - 35097012
Alignment:
Q  166 gaaaatcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatc 221  Q
    |||| |||||| |||||||||| |||||| ||||||||||||| ||||||||||||    
T  35097067 gaaattcattgcatttcattagctaaaatgtgccaaatacatgaaggtacatcatc 35097012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 32881942 - 32881904
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaa 201  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  32881942 gaagaaaatcattgcatttcattagataaaatatgccaa 32881904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 37856927 - 37856980
Alignment:
Q  171 tcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    |||||| |||||||||| ||||||||  |||||||||||||||| |||||||||    
T  37856927 tcattgcatttcattaggtaaaatatttcaaatacatgtaggtatatcatcaat 37856980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 5124529 - 5124573
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaaatacat 207  Q
    |||| |||||||||||||||||||| |||||| || |||||||||    
T  5124529 gaagcaaatcattgtatttcattagttaaaatgtgtcaaatacat 5124573  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 23059319 - 23059351
Alignment:
Q  192 aatatgccaaatacatgtaggtacatcatcaat 224  Q
    |||||||||||||||||||| ||||||||||||    
T  23059319 aatatgccaaatacatgtagatacatcatcaat 23059351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 1017575 - 1017636
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1017575 gaagaaaattattgcatttcattagataaaatatgccaaatacatgtaggtacatcatcaat 1017636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 26730820 - 26730881
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  26730820 gaagaaaatcattgcatttcattagataaaatatgccaaatacatgtaggtatatcatcaat 26730881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 47703699 - 47703745
Alignment:
Q  178 atttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  47703699 atttcattagataaaatatgccaaatacatgtaggtatatcatcaat 47703745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 7579667 - 7579623
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaaatacat 207  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  7579667 gaagaaaatcattgcatttcattagataaaatatgccaaatacat 7579623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 4525394 - 4525443
Alignment:
Q  171 tcattgtatttcattagataaaatatgccaaatacatgtaggtacatcat 220  Q
    |||||| |||||||||| |||||||||||||||||||||| |||||||||    
T  4525394 tcattgcatttcattagctaaaatatgccaaatacatgtacgtacatcat 4525443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 20223296 - 20223252
Alignment:
Q  180 ttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    |||||||  ||||||||||||||||||||||||||||||||||||    
T  20223296 ttcattaactaaaatatgccaaatacatgtaggtacatcatcaat 20223252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 10346433 - 10346491
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatc 221  Q
    ||||||| |||||| |||||||||| |||||| || ||||||||||  |||||||||||    
T  10346433 gaagaaattcattgcatttcattagctaaaatgtgtcaaatacatgagggtacatcatc 10346491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 10395307 - 10395368
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  10395307 gaagaaaatcattgtatttcattaactaaaatatgccaaatacatgtaggtacatcatcaat 10395368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 27877863 - 27877802
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    |||| ||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||    
T  27877863 gaaggaaatcattgcatttcattagctaaaatatgtcaaatacatgtaggtacatcatcaat 27877802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 12539278 - 12539217
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    ||||||| |||||| |||||||||| ||||||||| |||||| |||||||||||||||||||    
T  12539278 gaagaaattcattgcatttcattagctaaaatatgtcaaataaatgtaggtacatcatcaat 12539217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 40610089 - 40610028
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    |||||||||||||  |||||||||| ||||||||| |||||||||||| |||||||||||||    
T  40610089 gaagaaaatcattacatttcattagctaaaatatgtcaaatacatgtatgtacatcatcaat 40610028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 3601167 - 3601226
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatca 222  Q
    ||||||| |||||| ||| |||||| ||||||||| |||||||||| |||||||||||||    
T  3601167 gaagaaattcattgcattccattagctaaaatatgtcaaatacatgaaggtacatcatca 3601226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 32544293 - 32544348
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaaatacatgtaggtacatc 218  Q
    ||||||| |||||| |||||||||| |||||| ||||||||||||  |||||||||    
T  32544293 gaagaaattcattgcatttcattagttaaaatgtgccaaatacattaaggtacatc 32544348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 2114518 - 2114460
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatc 221  Q
    ||||||| |||||| |||||||||| |||||| ||||||||||||  ||||| ||||||    
T  2114518 gaagaaattcattgcatttcattagttaaaatgtgccaaatacataaaggtagatcatc 2114460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 30652250 - 30652294
Alignment:
Q  178 atttcattagataaaatatgccaaatacatgtaggtacatcatca 222  Q
    |||||| ||||||||||||| ||||||||||  ||||||||||||    
T  30652250 atttcaatagataaaatatgtcaaatacatgacggtacatcatca 30652294  T

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Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 11657796 - 11657735
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    |||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||    
T  11657796 gaagaaaatcattgcatttcattagctaaaatatgccaaatatatgtaggtacatcatcaat 11657735  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 27862053 - 27862099
Alignment:
Q  178 atttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||    
T  27862053 atttcattagctaaaatatgtcaaatacatgtaggtacatcatcaat 27862099  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 13104321 - 13104379
Alignment:
Q  165 agaaaatcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    |||||||||||| |||||||||| |||| |||||||||||||| |||||||||| |||||    
T  13104321 agaaaatcattgcatttcattagttaaa-tatgccaaatacatataggtacatcgtcaat 13104379  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 29021964 - 29021910
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaaatacatgtaggtacat 217  Q
    ||||||| |||||| |||| ||||| ||||||||| |||||| ||||||||||||    
T  29021964 gaagaaattcattgcatttaattagctaaaatatgtcaaatatatgtaggtacat 29021910  T

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Target: scaffold0010 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 255315 - 255376
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||    
T  255315 gaaggaaatcattgcatttcattagataaagtatgccaaatacatgtaggtatatcatcaat 255376  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 41315814 - 41315875
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    |||| ||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||    
T  41315814 gaaggaaatcattgcatttcattagataaaatatgccaaatatatgtaggtatatcatcaat 41315875  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 10977909 - 10977858
Alignment:
Q  173 attgtatttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    ||||||||||||||| ||||||||| |||||||||||||||| |||||||||    
T  10977909 attgtatttcattagctaaaatatgtcaaatacatgtaggtatatcatcaat 10977858  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 28589916 - 28589962
Alignment:
Q  178 atttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||    
T  28589916 atttcattagataaaatatgccaaatacatttaggtatatcatcaat 28589962  T

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Target: scaffold0445 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 12694 - 12650
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaaatacat 207  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  12694 gaagaaaatcattgcatttcattagataaaatatgccaaatacat 12650  T

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Target: scaffold0151 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 21300 - 21361
Alignment:
Q  163 gaagaaaatcattgtatttcattagataaaatatgccaaatacatgtaggtacatcatcaat 224  Q
    ||||||| |||||| |||||||||| |||||| || ||||||||||| ||||||||||||||    
T  21300 gaagaaattcattgcatttcattagctaaaatgtgtcaaatacatgtgggtacatcatcaat 21361  T

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