View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2788_low_9 (Length: 216)

Name: NF2788_low_9
Description: NF2788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2788_low_9
NF2788_low_9
[»] scaffold0010 (1 HSPs)
scaffold0010 (1-165)||(255622-255789)
[»] chr7 (3 HSPs)
chr7 (1-165)||(12129196-12129363)
chr7 (2-70)||(9451244-9451313)
chr7 (82-163)||(10325407-10325488)
[»] chr8 (5 HSPs)
chr8 (2-165)||(26951698-26951864)
chr8 (2-165)||(21276645-21276811)
chr8 (3-165)||(18178810-18178974)
chr8 (166-205)||(27789913-27789952)
chr8 (10-142)||(33324420-33324554)
[»] chr4 (4 HSPs)
chr4 (1-165)||(23059598-23059765)
chr4 (14-157)||(37836680-37836826)
chr4 (81-164)||(9631963-9632046)
chr4 (20-124)||(35096687-35096794)
[»] chr3 (4 HSPs)
chr3 (1-165)||(26731128-26731295)
chr3 (1-165)||(47703992-47704159)
chr3 (1-156)||(1017883-1018041)
chr3 (14-162)||(10346753-10346904)
[»] chr2 (3 HSPs)
chr2 (1-165)||(28590209-28590376)
chr2 (1-109)||(41316122-41316233)
chr2 (10-164)||(10977445-10977602)
[»] chr5 (5 HSPs)
chr5 (1-164)||(24274930-24275096)
chr5 (1-164)||(24387117-24387283)
chr5 (1-140)||(30304533-30304675)
chr5 (2-163)||(24870119-24870283)
chr5 (83-165)||(8703824-8703906)
[»] chr1 (5 HSPs)
chr1 (5-158)||(10395618-10395776)
chr1 (2-165)||(27877388-27877554)
chr1 (26-163)||(17321564-17321704)
chr1 (15-159)||(12538790-12538937)
chr1 (91-160)||(39287359-39287428)
[»] chr6 (3 HSPs)
chr6 (3-161)||(13104627-13104788)
chr6 (26-165)||(32895706-32895846)
chr6 (23-165)||(27862351-27862495)
[»] scaffold0151 (1 HSPs)
scaffold0151 (11-165)||(21557-21714)


Alignment Details
Target: scaffold0010 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 255622 - 255789
Alignment:
Q  1 cgtgtgtagtccaacagcttcccccacatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaaagcac---catcatccctaagatac 97  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||   |||||||||||||| ||    
T  255622 cgtgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattacgttcttgcaagtacaaaagcaccatcatcatccctaagacac 255721  T
Q  98 atgcccaaaccaaccctgttaagagaagtataaaaggatgcataaatgttgcatttatacctgccagg 165  Q
    |||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||    
T  255722 atgcccaaaccaaccctgttaaaagaagtagaaaaggatgcatcaatgttgcatttatacctgccagg 255789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 12129363 - 12129196
Alignment:
Q  1 cgtgtgtagtccaacagcttcccccacatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaaagcaccatcatc---cctaagatac 97  Q
    |||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| ||||||||||||||||||||||||||||||   ||||||| ||    
T  12129363 cgtgtgtagtccaacagcttcccccacatctataacacaaatagggacaaaccattatgttcttgcaagtacaaaagcaccatcatcatccctaagacac 12129264  T
Q  98 atgcccaaaccaaccctgttaagagaagtataaaaggatgcataaatgttgcatttatacctgccagg 165  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  12129263 atgcccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccagg 12129196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 9451313 - 9451244
Alignment:
Q  2 gtgtgtagtccaacagcttccc-ccacatctatatcacaaacaggggcaaaccattttgttcttgcaagt 70  Q
    ||||||| || |||||| |||| |||||||||||||| ||| ||||||||||||||| ||||||||||||    
T  9451313 gtgtgtaatcgaacagcctccctccacatctatatcataaagaggggcaaaccatttcgttcttgcaagt 9451244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 10325407 - 10325488
Alignment:
Q  82 atcatccctaagatacatgcccaaaccaaccctgttaagagaagtataaaaggatgcataaatgttgcatttatacctgcca 163  Q
    |||||| |||||  |||| ||||||| |||||| |||||||| ||  |||||||||||| |||||| ||||| |||||||||    
T  10325407 atcatctctaaggcacattcccaaacgaaccctattaagagaggtggaaaaggatgcatcaatgttacatttgtacctgcca 10325488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 1e-64; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 2 - 165
Target Start/End: Original strand, 26951698 - 26951864
Alignment:
Q  2 gtgtgtagtccaacagcttcccccacatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaaagcac---catcatccctaagataca 98  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||   |||||||||||||| |||    
T  26951698 gtgtgtagtccaacagcttcccccacctctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacaca 26951797  T
Q  99 tgcccaaaccaaccctgttaagagaagtataaaaggatgcataaatgttgcatttatacctgccagg 165  Q
    ||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  26951798 tgcccaacccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccagg 26951864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 2 - 165
Target Start/End: Original strand, 21276645 - 21276811
Alignment:
Q  2 gtgtgtagtccaacagcttcccccacatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaaagcaccatc---atccctaagataca 98  Q
    |||||||  |||||| | |||||||||||||||||||||| |||| ||||||||| |||||||||||| |||||| |||||||   ||||||||||||||    
T  21276645 gtgtgtaaaccaacaacctcccccacatctatatcacaaagagggtcaaaccattctgttcttgcaagaacaaaaccaccatcctcatccctaagataca 21276744  T
Q  99 tgcccaaaccaaccctgttaagagaagtataaaaggatgcataaatgttgcatttatacctgccagg 165  Q
    ||||||| ||||||| ||||||||||||  |||||||||||| ||| |||||||| |||||||||||    
T  21276745 tgcccaagccaacccagttaagagaagtggaaaaggatgcatcaatattgcatttgtacctgccagg 21276811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 3 - 165
Target Start/End: Complemental strand, 18178974 - 18178810
Alignment:
Q  3 tgtgtagtccaacagcttcccccacatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaaagcaccat---catccctaagatacat 99  Q
    |||| ||||||||||| ||||| ||||||||||||||||  || ||||||||||||||||||||||| |||||||||||||   ||||||||||| ||||    
T  18178974 tgtgcagtccaacagcctcccc-acatctatatcacaaagtggagcaaaccattttgttcttgcaagaacaaaagcaccatcaacatccctaagacacat 18178876  T
Q  100 gcccaaaccaaccctgttaagagaagtataaaaggatgcataaatgttgcatttatacctgccagg 165  Q
    ||| |||||||||||||||||| ||||  |||||||||||| ||| |||||||| ||||| |||||    
T  18178875 gcctaaaccaaccctgttaagaaaagtggaaaaggatgcatcaatattgcatttgtaccttccagg 18178810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 166 - 205
Target Start/End: Original strand, 27789913 - 27789952
Alignment:
Q  166 accctttaccatgtttaggtgttttattgtagcttggttc 205  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27789913 accctttaccatgtttaggtgttttattgtagcttggttc 27789952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 142
Target Start/End: Complemental strand, 33324554 - 33324420
Alignment:
Q  10 tccaacagcttcccccacatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaaagcaccatcatc---cctaagatacatgcccaaa 106  Q
    |||||| || || ||||| |||| |||||||| ||||  ||||||||  ||||||||||| ||||| |||||||||||   ||||||| |||| || |      
T  33324554 tccaaccgcctctcccacctctacatcacaaagagggt-aaaccattccgttcttgcaagaacaaatgcaccatcatcatccctaagacacataccgagt 33324456  T
Q  107 ccaaccctgttaagagaagtataaaaggatgcataa 142  Q
    |||||||||||| |||||||  ||||||||||||||    
T  33324455 ccaaccctgttatgagaagtggaaaaggatgcataa 33324420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 9e-63; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 23059598 - 23059765
Alignment:
Q  1 cgtgtgtagtccaacagcttcccccacatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaaagcac---catcatccctaagatac 97  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||   |||||||||||||| ||    
T  23059598 cgtgtgtagcccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacac 23059697  T
Q  98 atgcccaaaccaaccctgttaagagaagtataaaaggatgcataaatgttgcatttatacctgccagg 165  Q
    |||||||| |||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  23059698 atgcccaacccaaccttgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccagg 23059765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 37836680 - 37836826
Alignment:
Q  14 acagcttcccccacatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaa---agcaccatcatccctaagatacatgcccaaaccaa 110  Q
    ||||| |||||| |||||||||||||   ||| ||||||||  ||||| ||||||| |||||   | || ||||||| | |||| |||| |||||||| |    
T  37836680 acagcctcccccgcatctatatcacacgaaggagcaaaccagattgtttttgcaagaacaaaatcatcagcatcatctccaagacacattcccaaaccga 37836779  T
Q  111 ccctgttaagagaagtataaaaggatgcataaatgttgcatttatac 157  Q
    || | |||||||| ||  |||||||||| | |||||| |||||||||    
T  37836780 ccttattaagagatgtgaaaaaggatgcgtcaatgttacatttatac 37836826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 164
Target Start/End: Original strand, 9631963 - 9632046
Alignment:
Q  81 catcatccctaagatacatgcccaaaccaaccctgttaagagaagtataaaaggatgcataaatgttgcatttatacctgccag 164  Q
    ||||||| |||||| |||| || ||||  ||||| |||||||| ||| |||||||||||| ||| || ||||||||||| ||||    
T  9631963 catcatctctaagacacattccaaaacataccctattaagagaggtagaaaaggatgcatcaatattacatttataccttccag 9632046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 35096794 - 35096687
Alignment:
Q  20 tcccccacatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaaagcac---catcatccctaagatacatgcccaaaccaaccctgt 116  Q
    ||||| |||||||||||||| | ||| ||||||||||  ||  ||||||| |||||| |||   ||||||| |||||| |||| ||||| ||||| || |    
T  35096794 tcccctacatctatatcacacaaaggagcaaaccattccgtctttgcaagaacaaaaacaccaacatcatctctaagacacatacccaatccaactctat 35096695  T
Q  117 taagagaa 124  Q
    ||||||||    
T  35096694 taagagaa 35096687  T

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Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 26731128 - 26731295
Alignment:
Q  1 cgtgtgtagtccaacagcttcccccacatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaaagcac---catcatccctaagatac 97  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||   |||||||||||||| ||    
T  26731128 cgtgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattatgttcttgcaagtacaaaaacaccatcatcatccctaagacac 26731227  T
Q  98 atgcccaaaccaaccctgttaagagaagtataaaaggatgcataaatgttgcatttatacctgccagg 165  Q
    ||||||||||||||||||||| ||||| || |||| ||||||| ||||||||||||||||||||||||    
T  26731228 atgcccaaaccaaccctgttaggagaaatagaaaatgatgcatcaatgttgcatttatacctgccagg 26731295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 47703992 - 47704159
Alignment:
Q  1 cgtgtgtagtccaacagcttcccccacatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaaagcacc---atcatccctaagatac 97  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||   ||||||||||||| ||    
T  47703992 cgtgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattctgctcttgcaagtacaaaagcaccattatcatccctaagacac 47704091  T
Q  98 atgcccaaaccaaccctgttaagagaagtataaaaggatgcataaatgttgcatttatacctgccagg 165  Q
    |||||||| |||||| |||||||||||||| | ||||||||||  |||||||||||||||||||||||    
T  47704092 atgcccaacccaaccatgttaagagaagtaaagaaggatgcatctatgttgcatttatacctgccagg 47704159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 1017883 - 1018041
Alignment:
Q  1 cgtgtgtagtccaacagcttcccccacatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaaagcac---catcatccctaagatac 97  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||   ||||||||||||||  |    
T  1017883 cgtgtgtagtcccacagcttcccccacatctatatcacaaataggggcaaactattttgttcttgcaagtacaaaagcaccatcatcatccctaagacgc 1017982  T
Q  98 atgcccaaaccaaccctgttaagagaagtataaaaggatgcataaatgttgcatttata 156  Q
    ||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||    
T  1017983 atgcccaaaccaaccttgttaagagaagtagaaaaggatgcatcaatgttgcatttata 1018041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 14 - 162
Target Start/End: Original strand, 10346753 - 10346904
Alignment:
Q  14 acagcttcccccacatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaaagcacca---tcatccctaagatacatgcccaaaccaa 110  Q
    ||||| ||||| |||||||||||||| | ||| ||||||||||  ||  ||||||| |||||| |||||   ||||| |||||| ||||||||||||||     
T  10346753 acagcctcccctacatctatatcacagagaggagcaaaccattccgtctttgcaagaacaaaaacaccaacatcatctctaagacacatgcccaaaccag 10346852  T
Q  111 ccctgttaagagaagtataaaaggatgcataaatgttgcatttatacctgcc 162  Q
    || | |||||| ||||  |||| |||||||  ||||||||||||||||||||    
T  10346853 ccatattaagataagtggaaaaagatgcatctatgttgcatttatacctgcc 10346904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 28590209 - 28590376
Alignment:
Q  1 cgtgtgtagtccaacagcttcccccacatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaaagcac---catcatccctaagatac 97  Q
    ||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||   |||||||||||||| ||    
T  28590209 cgtgtgtagtccaacagcttcccccgcatctatatcacaaatatgggcaaaccattttgttcttgcaagtacaaaagcaccatcatcatccctaagacac 28590308  T
Q  98 atgcccaaaccaaccctgttaagagaagtataaaaggatgcataaatgttgcatttatacctgccagg 165  Q
    |||||||| ||||||||||||||||||||| | ||||||||||  |||||||||||||||||||||||    
T  28590309 atgcccaacccaaccctgttaagagaagtagagaaggatgcatctatgttgcatttatacctgccagg 28590376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 41316122 - 41316233
Alignment:
Q  1 cgtgtgtagtccaacagcttcccccacatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaaagcac---catcatccctaagatac 97  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||   |||||||||||||| ||    
T  41316122 cgtgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacac 41316221  T
Q  98 atgcccaaacca 109  Q
    ||||||||||||    
T  41316222 atgcccaaacca 41316233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 164
Target Start/End: Complemental strand, 10977602 - 10977445
Alignment:
Q  10 tccaacagcttcccccacatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaaagcaccatcatc---cctaagatacatgcccaaa 106  Q
    |||||| || || |||||||||| |||||||| ||||| |||||||  |||||||||||| ||||| |||||||||||   ||||||| |||| || |      
T  10977602 tccaaccgcctctcccacatctacatcacaaagaggggaaaaccatcatgttcttgcaagaacaaacgcaccatcatcatccctaagacacataccgagt 10977503  T
Q  107 ccaaccctgttaagagaagtataaaaggatgcataaatgttgcatttatacctgccag 164  Q
    ||||||||||||||||||||  |||| ||||||| |||||||||||||||||||||||    
T  10977502 ccaaccctgttaagagaagtggaaaatgatgcatcaatgttgcatttatacctgccag 10977445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 24275096 - 24274930
Alignment:
Q  1 cgtgtgtagtccaacagcttcccccacatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaaagcaccat---catccctaagatac 97  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||||   ||||||||||| ||    
T  24275096 cgtgtgtagtccaacagcttcccccacacctatatcacaaataggggcaaaccattatgttcttgcaagtacagaagcaccatcatcatccctaagacac 24274997  T
Q  98 atgcccaaaccaaccctgttaagagaagtataaaaggatgcataaatgttgcatttatacctgccag 164  Q
    ||| |||||||||||||||||||||||||| |||||||||||| |||| |||||||||| |||||||    
T  24274996 atgtccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgctgcatttatatctgccag 24274930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 24387117 - 24387283
Alignment:
Q  1 cgtgtgtagtccaacagcttcccccacatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaaagcac---catcatccctaagatac 97  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||| ||||||   |||||||||||||| ||    
T  24387117 cgtgtgtagtccaacagcttcccccacacctatatcacaaataggggcaaaccattatgttcttgcaagtacagaagcaccatcatcatccctaagacac 24387216  T
Q  98 atgcccaaaccaaccctgttaagagaagtataaaaggatgcataaatgttgcatttatacctgccag 164  Q
    ||| |||||||||||||||||||||||||| |||||||||||| |||| |||||||||| |||||||    
T  24387217 atgtccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgctgcatttatatctgccag 24387283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 30304675 - 30304533
Alignment:
Q  1 cgtgtgtagtccaacagcttcccccacatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaaag---caccatcatccctaagatac 97  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||   || |||||||||||||| ||    
T  30304675 cgtgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcgccatcatcatccctaagacac 30304576  T
Q  98 atgcccaaaccaaccctgttaagagaagtataaaaggatgcat 140  Q
    |||||||| ||||||||||||||||||||| ||||||||||||    
T  30304575 atgcccaacccaaccctgttaagagaagtagaaaaggatgcat 30304533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 2 - 163
Target Start/End: Complemental strand, 24870283 - 24870119
Alignment:
Q  2 gtgtgtagtccaacagcttcccccacatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaa---agcaccatcatccctaagataca 98  Q
    ||||||||||||||||| ||||||| |||||||||||||| |||||||||||||| ||||||| |||| |||||   | || |||||||||||  | |||    
T  24870283 gtgtgtagtccaacagcctcccccaaatctatatcacaaagaggggcaaaccattctgttcttacaagaacaaaaataccatcatcatccctataacaca 24870184  T
Q  99 tgcccaaaccaaccctgttaagagaagtataaaaggatgcataaatgttgcatttatacctgcca 163  Q
    |||||||||||||| |||||||||||||  |||| ||||||| ||||||||||||||||||||||    
T  24870183 tgcccaaaccaaccttgttaagagaagtggaaaatgatgcatcaatgttgcatttatacctgcca 24870119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 83 - 165
Target Start/End: Original strand, 8703824 - 8703906
Alignment:
Q  83 tcatccctaagatacatgcccaaaccaaccctgttaagagaagtataaaaggatgcataaatgttgcatttatacctgccagg 165  Q
    |||||||||||  ||||||||| ||||||||| | |||||||| | |||| ||||||| ||||||||||||||||||||||||    
T  8703824 tcatccctaaggcacatgcccagaccaaccctctgaagagaagcagaaaaagatgcatcaatgttgcatttatacctgccagg 8703906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 158
Target Start/End: Original strand, 10395618 - 10395776
Alignment:
Q  5 tgtagtccaacagcttcccccacatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaaagcac---catcatccctaagatacatgc 101  Q
    ||||| ||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| |||| ||||||||||   |||||||||||||| ||||||    
T  10395618 tgtagcccaacagtttcccccacatctatatcacaaagaggggcaaactattttgttcttacaagaacaaaagcaccatcatcatccctaagacacatgc 10395717  T
Q  102 ccaaacc--aaccctgttaagagaagtataaaaggatgcataaatgttgcatttatacc 158  Q
    ||||| |  ||||||||||||||||||  ||||||| |||| |||||||||||||||||    
T  10395718 ccaaagcaaaaccctgttaagagaagtggaaaaggaagcatcaatgttgcatttatacc 10395776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 165
Target Start/End: Complemental strand, 27877554 - 27877388
Alignment:
Q  2 gtgtgtagtccaacagcttcccccacatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaaagcacca---tcatccctaagataca 98  Q
    |||||||| |||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||| ||   |||||||||||| |||    
T  27877554 gtgtgtagaccaacagcctcccccacatctatatcacaaagaggggcaaaccattctgttcttgcaagcacaaaagcatcatcctcatccctaagacaca 27877455  T
Q  99 tgcccaaaccaaccctgttaagagaagtataaaaggatgcataaatgttgcatttatacctgccagg 165  Q
    ||||||| |||||  |||||| ||||||  |||||||||||| ||| |||||||| || ||||||||    
T  27877454 tgcccaagccaactatgttaaaagaagttgaaaaggatgcatcaatattgcatttgtatctgccagg 27877388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 163
Target Start/End: Complemental strand, 17321704 - 17321564
Alignment:
Q  26 acatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaaagcaccatcatc---cctaagatacatgcccaaaccaaccctgttaagag 122  Q
    |||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||   ||||||| ||||||||| ||||||||| |||||||    
T  17321704 acatctatatcacaaagaggggcaaaccattttgttcttgtaagaacaaaagcaccatcatcatccctaagacacatgcccagaccaaccctattaagag 17321605  T
Q  123 aagtataaaaggatgcataaatgttgcatttatacctgcca 163  Q
    |||   |||| ||||||| ||||||||||||||||||||||    
T  17321604 aagcggaaaatgatgcatcaatgttgcatttatacctgcca 17321564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 15 - 159
Target Start/End: Complemental strand, 12538937 - 12538790
Alignment:
Q  15 cagcttcccccacatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaaagcaccatc---atccctaagatacatgcccaaaccaac 111  Q
    |||| |||||||| |||||||  |||| ||| |||||| |||| |||||| |||| |||||||||| |||   |||||||||  ||||||||| ||||||    
T  12538937 cagcctcccccacgtctatattgcaaagaggagcaaacaatttcgttcttacaagaacaaaagcacaatcgtcatccctaaggcacatgcccagaccaac 12538838  T
Q  112 cctgttaagagaagtataaaaggatgcataaatgttgcatttatacct 159  Q
    || |||||||||||   |||| ||||||| | ||||||||||||||||    
T  12538837 ccagttaagagaagaggaaaatgatgcatcagtgttgcatttatacct 12538790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 160
Target Start/End: Complemental strand, 39287428 - 39287359
Alignment:
Q  91 aagatacatgcccaaaccaaccctgttaagagaagtataaaaggatgcataaatgttgcatttatacctg 160  Q
    |||| |||| |||||||||||||| |||||||| ||  |||||||||||||||| || ||||| ||||||    
T  39287428 aagacacattcccaaaccaaccctattaagagaggtggaaaaggatgcataaattttacatttgtacctg 39287359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 13104627 - 13104788
Alignment:
Q  3 tgtgtagtccaacagcttcccccacatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaaagcaccatcatc---cctaagatacat 99  Q
    ||||||||||| || | ||||| |||||||||||||||| | ||| ||| |||| |||||||||||| |||||||||||||||||   | ||| | ||||    
T  13104627 tgtgtagtccatcaacgtccccgacatctatatcacaaagacgggtaaatcattatgttcttgcaagaacaaaagcaccatcatcttccgtaatacacat 13104726  T
Q  100 gcccaaaccaaccctgttaagagaagtataaaaggatgcataaatgttgcatttatacctgc 161  Q
    ||||||||||||| |||||||||||||  |||||||||||| ||||||||||||||||||||    
T  13104727 gcccaaaccaaccttgttaagagaagtgaaaaaggatgcatcaatgttgcatttatacctgc 13104788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 165
Target Start/End: Complemental strand, 32895846 - 32895706
Alignment:
Q  26 acatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaaagcaccatc---atccctaagatacatgcccaaaccaaccctgttaagag 122  Q
    |||||||||||||| |  ||| ||||||||| |||| ||||||| ||||||||||||||   |||||||||| |||||||||| ||||| ||||||||||    
T  32895846 acatctatatcacaga--gggacaaaccattatgttattgcaagcacaaaagcaccatcctcatccctaagacacatgcccaagccaactctgttaagag 32895749  T
Q  123 aagtataaaaggatgcataaatgttgcatttatacctgccagg 165  Q
    ||||  |||||||||||| ||| |||||||| || ||||||||    
T  32895748 aagttgaaaaggatgcatcaatattgcatttgtaactgccagg 32895706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 27862351 - 27862495
Alignment:
Q  23 cccacatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaaag---caccatcatccctaagatacatgcccaaaccaaccctgttaa 119  Q
    ||||| |||| ||| |||| |||||||||| |||  ||||||||||| ||||| |   |||||||||||||| |  |||| ||||  |||||| || |||    
T  27862351 cccacctctacatcgcaaagaggggcaaactattccgttcttgcaagaacaaatgtaccaccatcatccctaggc-acatacccagtccaaccatgctaa 27862449  T
Q  120 gagaagtataaaaggatgcataaatgttgcatttatacctgccagg 165  Q
    |||||||  |||| ||||||| ||||||||||||||||||||||||    
T  27862450 gagaagtggaaaaagatgcatcaatgttgcatttatacctgccagg 27862495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 21557 - 21714
Alignment:
Q  11 ccaacagcttcccccacatctatatcacaaacaggggcaaaccattttgttcttgcaagtacaaaagcacca---tcatccctaagatacatgcccaaac 107  Q
    |||||||| ||||| || ||||| ||||||| |||||| |||||||  ||| ||||||| |||||  |||||   ||||| | |||| |||| |||||||    
T  21557 ccaacagcctcccctacgtctatgtcacaaagaggggcgaaccattccgtttttgcaagaacaaagacaccagcatcatctcgaagacacatacccaaac 21656  T
Q  108 caaccctgttaagagaagtataaaaggatgcataaatgttgcatttatacctgccagg 165  Q
    || |||||||||||  |||  |||| ||||||| ||||||||||||||||||| ||||    
T  21657 cacccctgttaagattagtggaaaaagatgcatcaatgttgcatttatacctgtcagg 21714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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