View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2789_high_1 (Length: 679)
Name: NF2789_high_1
Description: NF2789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2789_high_1 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 608; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 11 - 679
Target Start/End: Original strand, 21179035 - 21179703
Alignment:
| Q |
11 |
atggacatcatctaatctcatcacatatctacattctaatccaaacaatgtagtacaatactattacattcatacaacttgattctatctcaataccact |
110 |
Q |
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| T |
21179035 |
atggatatcatctaatctcatcacatatctacattctaatccaaacaatgtagtacaatactattacattcatacaacttgattctatctcaataccact |
21179134 |
T |
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| Q |
111 |
aatcctttcaattagcgattggaataaactcattctttattaactcaatttgacgactaaaacacccaagaacacttggatgggatgataagatatttct |
210 |
Q |
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| T |
21179135 |
aatcctttcaattagcgattggaataaactcattctttcttaactcaatttgacgactaaaacactcaagagcacttggatgggatgataagatatttct |
21179234 |
T |
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| Q |
211 |
tctaacttaaccagaggtcatgggttctaatccatccatttaaatgtagcagttgccttaaatctcttgaaggagagctttgtcattcactacctgactt |
310 |
Q |
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| T |
21179235 |
tctaacttaaccagaggtcatgggttctaatccatccctttaaatgtagcagttgccttaaatctcttgaaggagagctttgtcatccactacctgactt |
21179334 |
T |
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| Q |
311 |
gagtgattagtctatgcagttgtgtggagatcatatccgattcacacnnnnnnntcgatgactaaaacacaacattggaagataataaaagaaagaaaaa |
410 |
Q |
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| T |
21179335 |
gagtgattagtctatgcagttgtgtggagatcatatccgattcacacaaaaaaatcgatgactaaaacacaacattggaagataaaaaaagaaagaaaaa |
21179434 |
T |
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| Q |
411 |
tatagtagcatggacataacaagtttttcaaattactcaaacaagtaagttattttaattttcaaaactagtgaagtcactctaaactcatcttgcttca |
510 |
Q |
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| T |
21179435 |
tatagtagcatggacataacaagtttttcaaattactcaaacaagtaagttattttaattctcaaaactagtgaagtcactctaaactcatcttgcttca |
21179534 |
T |
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| Q |
511 |
actagtgaatttgtgacaacattcacagaaacgttttcttctatgcttctagaaagtcttgaattttcaatacctctcacattttgaaatgccggtggct |
610 |
Q |
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| T |
21179535 |
actagtgaatttgtgacaacattcacagaaacgttttcttctatgcttctagagagtcttgaattttcaatacctctcacattttgaaatgccggtggct |
21179634 |
T |
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| Q |
611 |
ttggactaggaagggatgtagtgtcattcccaatcattgttacaacatcagacatggttggtctatctt |
679 |
Q |
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| T |
21179635 |
ttggactaagaagggatgtagtgtcattcccaatcattgttacaacatcagacatggttggtctatctt |
21179703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 476 - 679
Target Start/End: Complemental strand, 23190528 - 23190324
Alignment:
| Q |
476 |
aactagtgaagtcactctaaa-ctcatcttgcttcaactagtgaatttgtgacaacattcacagaaacgttttcttctatgcttctagaaagtcttgaat |
574 |
Q |
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| T |
23190528 |
aactagcgaagtcactctaaaactcatcttgcttcaatgagtgaatctgtgatgccattcagagaaatgtttccttctatgctttttgagagtcttgaat |
23190429 |
T |
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| Q |
575 |
tttcaatacctctcacattttgaaatgccggtggctttggactaggaagggatgtagtgtcattcccaatcattgttacaacatcagacatggttggtct |
674 |
Q |
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| T |
23190428 |
attcaatacctctcacgttttgaaatgctggtggctttggaatcggaagggatgcagtgtcattaccaatcattgatacaacatcagacatggttggcct |
23190329 |
T |
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| Q |
675 |
atctt |
679 |
Q |
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| T |
23190328 |
atctt |
23190324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 486 - 677
Target Start/End: Complemental strand, 23183142 - 23182950
Alignment:
| Q |
486 |
gtcactctaaa-ctcatcttgcttcaactagtgaatttgtgacaacattcacagaaacgttttcttctatgcttctagaaagtcttgaattttcaatacc |
584 |
Q |
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||||||||||| ||||||||||||||| | ||||| ||||| |||||||||||| |||| ||||||||||| | || ||||||||| ||| ||| || |
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| T |
23183142 |
gtcactctaaaactcatcttgcttcaatgactgaatctgtgatgccattcacagaaatgtttccttctatgctttttgagagtcttgaacttttaatgcc |
23183043 |
T |
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| Q |
585 |
tctcacattttgaaatgccggtggctttggactaggaagggatgtagtgtcattcccaatcattgttacaacatcagacatggttggtctatc |
677 |
Q |
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|||||||||||||||||| |||||||||||| | ||||| |||| ||||||||| |||| ||||| ||||||||||||||||||||| ||||| |
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| T |
23183042 |
tctcacattttgaaatgctggtggctttggaatcggaagcgatgcagtgtcattaccaaacattgatacaacatcagacatggttggcctatc |
23182950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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