View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2789_high_2 (Length: 523)

Name: NF2789_high_2
Description: NF2789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2789_high_2
NF2789_high_2
[»] chr4 (24 HSPs)
chr4 (15-227)||(4899969-4900180)
chr4 (183-231)||(45919513-45919561)
chr4 (137-231)||(13387730-13387823)
chr4 (183-231)||(4158617-4158665)
chr4 (183-231)||(41695386-41695434)
chr4 (169-241)||(42419701-42419773)
chr4 (201-241)||(42883472-42883512)
chr4 (177-230)||(4899415-4899469)
chr4 (175-231)||(550316-550373)
chr4 (184-241)||(21824549-21824606)
chr4 (184-241)||(21825154-21825210)
chr4 (190-231)||(29212010-29212051)
chr4 (182-231)||(41696125-41696174)
chr4 (183-231)||(46619633-46619681)
chr4 (182-241)||(36855670-36855729)
chr4 (169-231)||(6784843-6784905)
chr4 (184-230)||(31915167-31915212)
chr4 (180-230)||(36854912-36854962)
chr4 (180-241)||(12835178-12835239)
chr4 (169-238)||(19550217-19550286)
chr4 (182-239)||(24377954-24378011)
chr4 (169-229)||(19549466-19549526)
chr4 (169-241)||(25478068-25478140)
chr4 (174-226)||(52362745-52362797)
[»] scaffold0093 (2 HSPs)
scaffold0093 (57-231)||(22849-23022)
scaffold0093 (174-241)||(22764-22831)
[»] chr3 (31 HSPs)
chr3 (59-226)||(22258853-22259019)
chr3 (174-237)||(28907882-28907945)
chr3 (184-241)||(11238854-11238911)
chr3 (174-241)||(11238508-11238575)
chr3 (184-230)||(20199870-20199916)
chr3 (175-241)||(54584877-54584943)
chr3 (184-241)||(38798245-38798301)
chr3 (174-231)||(53949310-53949367)
chr3 (183-231)||(20200614-20200662)
chr3 (183-231)||(20202798-20202846)
chr3 (169-241)||(46914963-46915035)
chr3 (183-231)||(47167889-47167937)
chr3 (183-231)||(53950083-53950131)
chr3 (190-237)||(28908663-28908710)
chr3 (183-241)||(47169163-47169221)
chr3 (180-240)||(5531949-5532010)
chr3 (174-231)||(53948662-53948719)
chr3 (174-226)||(30833688-30833740)
chr3 (174-230)||(43400765-43400821)
chr3 (169-241)||(46915717-46915789)
chr3 (169-241)||(50802580-50802652)
chr3 (169-241)||(50873225-50873297)
chr3 (174-229)||(11239884-11239939)
chr3 (174-241)||(30834428-30834495)
chr3 (174-241)||(51827555-51827621)
chr3 (177-230)||(22259563-22259617)
chr3 (184-241)||(16302625-16302682)
chr3 (169-233)||(46888476-46888540)
chr3 (169-229)||(46889257-46889317)
chr3 (174-234)||(53948569-53948629)
chr3 (175-231)||(54584231-54584287)
[»] scaffold0009 (2 HSPs)
scaffold0009 (174-241)||(105502-105569)
scaffold0009 (174-231)||(106286-106343)
[»] chr5 (14 HSPs)
chr5 (183-241)||(21148103-21148161)
chr5 (473-523)||(33626374-33626424)
chr5 (183-241)||(42521697-42521755)
chr5 (183-243)||(21145925-21145986)
chr5 (183-231)||(23206200-23206248)
chr5 (169-241)||(492127-492199)
chr5 (169-241)||(3259064-3259136)
chr5 (169-241)||(3259799-3259871)
chr5 (169-241)||(4737038-4737109)
chr5 (169-241)||(14481451-14481523)
chr5 (169-229)||(25836601-25836661)
chr5 (174-226)||(42519647-42519699)
chr5 (184-231)||(42520438-42520485)
chr5 (183-231)||(42520619-42520667)
[»] scaffold0301 (1 HSPs)
scaffold0301 (190-241)||(20722-20773)
[»] chr8 (18 HSPs)
chr8 (174-241)||(39861648-39861715)
chr8 (174-230)||(25129352-25129408)
chr8 (184-231)||(5881145-5881192)
chr8 (174-241)||(29267936-29268003)
chr8 (183-225)||(29266170-29266212)
chr8 (183-228)||(5332179-5332224)
chr8 (180-241)||(16847675-16847736)
chr8 (174-231)||(25128588-25128645)
chr8 (169-241)||(24023013-24023085)
chr8 (174-241)||(29268811-29268879)
chr8 (183-231)||(42986648-42986696)
chr8 (174-224)||(36732081-36732131)
chr8 (174-236)||(39131025-39131087)
chr8 (174-231)||(3583287-3583344)
chr8 (174-231)||(3583638-3583695)
chr8 (174-231)||(17450528-17450585)
chr8 (200-241)||(34654941-34654982)
chr8 (175-231)||(10092921-10092977)
[»] chr7 (30 HSPs)
chr7 (174-241)||(30469504-30469571)
chr7 (174-241)||(43334123-43334189)
chr7 (183-241)||(8487021-8487079)
chr7 (183-241)||(8512696-8512754)
chr7 (174-231)||(31179915-31179972)
chr7 (174-241)||(3163494-3163561)
chr7 (174-231)||(3162871-3162928)
chr7 (168-241)||(37706312-37706385)
chr7 (183-231)||(8487814-8487862)
chr7 (183-231)||(8513469-8513517)
chr7 (169-241)||(30001795-30001867)
chr7 (169-241)||(30469429-30469501)
chr7 (183-231)||(38059849-38059897)
chr7 (174-241)||(3219296-3219363)
chr7 (174-229)||(21415391-21415446)
chr7 (174-241)||(30471002-30471069)
chr7 (174-241)||(43334723-43334790)
chr7 (177-226)||(4962374-4962424)
chr7 (180-242)||(30468684-30468746)
chr7 (174-231)||(3474904-3474961)
chr7 (174-231)||(30659857-30659914)
chr7 (174-231)||(37422561-37422618)
chr7 (169-229)||(30002549-30002609)
chr7 (169-241)||(32021214-32021286)
chr7 (184-231)||(46428125-46428172)
chr7 (169-231)||(24307098-24307160)
chr7 (183-241)||(31178632-31178690)
chr7 (169-231)||(42489963-42490025)
chr7 (174-231)||(3475567-3475624)
chr7 (184-229)||(43742724-43742769)
[»] chr6 (15 HSPs)
chr6 (174-241)||(19653861-19653928)
chr6 (174-241)||(8993581-8993648)
chr6 (174-241)||(9018028-9018095)
chr6 (183-231)||(19651073-19651121)
chr6 (174-241)||(1370151-1370218)
chr6 (174-240)||(14537998-14538064)
chr6 (183-236)||(9280898-9280951)
chr6 (174-231)||(18153260-18153317)
chr6 (174-231)||(18649895-18649952)
chr6 (174-231)||(32907429-32907486)
chr6 (174-241)||(1371049-1371115)
chr6 (175-241)||(19820864-19820930)
chr6 (190-231)||(8992909-8992950)
chr6 (190-231)||(9017356-9017397)
chr6 (180-241)||(18969852-18969913)
[»] chr1 (32 HSPs)
chr1 (174-241)||(21791478-21791545)
chr1 (182-241)||(26212910-26212969)
chr1 (174-241)||(46284746-46284813)
chr1 (183-241)||(5497293-5497351)
chr1 (174-231)||(21790752-21790809)
chr1 (183-231)||(7013041-7013089)
chr1 (189-241)||(10716944-10716996)
chr1 (183-231)||(39848883-39848931)
chr1 (183-231)||(47374849-47374897)
chr1 (184-231)||(5496547-5496594)
chr1 (174-241)||(16960123-16960190)
chr1 (174-241)||(29858915-29858981)
chr1 (182-241)||(39870815-39870874)
chr1 (182-241)||(42986748-42986807)
chr1 (174-231)||(5216563-5216620)
chr1 (174-231)||(14886826-14886883)
chr1 (174-239)||(40959768-40959833)
chr1 (174-231)||(42987079-42987136)
chr1 (174-231)||(46285543-46285600)
chr1 (190-241)||(27651324-27651375)
chr1 (182-241)||(48577560-48577619)
chr1 (174-240)||(4594699-4594765)
chr1 (169-231)||(24081456-24081518)
chr1 (183-241)||(39847800-39847857)
chr1 (174-231)||(4595572-4595629)
chr1 (174-231)||(14886154-14886211)
chr1 (190-231)||(16959505-16959546)
chr1 (198-231)||(17606265-17606298)
chr1 (174-227)||(27652097-27652150)
chr1 (183-231)||(7011966-7012014)
chr1 (174-226)||(47052351-47052403)
chr1 (169-229)||(51661348-51661408)
[»] chr2 (21 HSPs)
chr2 (183-241)||(42848709-42848767)
chr2 (174-241)||(8911158-8911225)
chr2 (190-246)||(121291-121347)
chr2 (169-241)||(863198-863270)
chr2 (183-231)||(42849504-42849552)
chr2 (184-231)||(122961-123008)
chr2 (174-241)||(19386287-19386354)
chr2 (184-230)||(13328818-13328864)
chr2 (174-240)||(20202643-20202709)
chr2 (184-246)||(39629521-39629583)
chr2 (190-231)||(4776989-4777030)
chr2 (174-231)||(8911833-8911890)
chr2 (174-239)||(13327738-13327803)
chr2 (174-241)||(24429610-24429677)
chr2 (174-241)||(27059168-27059235)
chr2 (190-231)||(4776249-4776290)
chr2 (184-241)||(34453012-34453069)
chr2 (182-231)||(38273553-38273602)
chr2 (182-231)||(38985992-38986041)
chr2 (169-241)||(2054347-2054419)
chr2 (183-231)||(44926643-44926691)
[»] scaffold0155 (1 HSPs)
scaffold0155 (174-241)||(990-1057)
[»] scaffold0853 (1 HSPs)
scaffold0853 (190-241)||(607-658)
[»] scaffold0188 (1 HSPs)
scaffold0188 (174-231)||(25616-25673)
[»] scaffold0050 (1 HSPs)
scaffold0050 (169-241)||(8403-8475)
[»] scaffold1339 (1 HSPs)
scaffold1339 (169-241)||(1908-1980)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 3e-80; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 4899969 - 4900180
Alignment:
Q  15 caaaggaagtggttattaattactcatcatgaagannnnnnnagaatagacatgaattaggaaaaccttaaggttgaagaagacgcaaaattggaaataa 114  Q
    ||||||||||||| ||||||||||||| ||||||        ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  4899969 caaaggaagtggtcattaattactcattatgaaggtttttttagaatagacatgaattaggaaaaccttaaagttgaagaagacacaaaattggaaataa 4900068  T
Q  115 taatagtcacatgaactacattaatgatttaatatgagcctttgatcaaatactaaatcaatggttgagatttgatgtcaaaattaatttgacaccttag 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||| |    
T  4900069 taatagtcacatgaactacattaatgatttaatatgagcctttgatcaaatact-aatcaatggttgagatttggtgtcaagattaatttgacaccttgg 4900167  T
Q  215 tgtcatttgatcc 227  Q
    |||||||||||||    
T  4900168 tgtcatttgatcc 4900180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 45919561 - 45919513
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  45919561 gatttgatgtcaaatttaatttgacaccttggtgtcatttgatcctatc 45919513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 137 - 231
Target Start/End: Original strand, 13387730 - 13387823
Alignment:
Q  137 aatgatttaatatgagcctttgatcaaatactaaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    ||||| ||| |||||| | ||||||||||| ||||| || |||||||||||| ||| ||||||||||||||| ||| |||||| |||||| ||||    
T  13387730 aatgaattattatgagtcattgatcaaata-taaataaagggttgagatttggtgttaaaattaatttgacatcttggtgtcaattgatcatatc 13387823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 4158617 - 4158665
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||| ||||||| |||||||||||||| |||||||||||||||||||    
T  4158617 gatttggtgtcaaatttaatttgacacctaagtgtcatttgatcctatc 4158665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 41695434 - 41695386
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  41695434 gatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatc 41695386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 42419701 - 42419773
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||| ||||| ||||||||| ||||||| | | ||||||||| | |||||||||||||||||| |||||||||    
T  42419701 aaatgaatggatgagatttggtgtcaaactaattttgacaccatggtgtcatttgatcctatcccatatatat 42419773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 42883472 - 42883512
Alignment:
Q  201 atttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  42883472 atttgacaccttagtgtcatttgatcctatcccatatatat 42883512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 4899469 - 4899415
Alignment:
Q  177 ggttgagatttgatgtcaaaatt-aatttgacaccttagtgtcatttgatcctat 230  Q
    |||||||||||| |||||||||| ||||||||||||| ||| |||||||||||||    
T  4899469 ggttgagatttggtgtcaaaatttaatttgacaccttggtggcatttgatcctat 4899415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 550316 - 550373
Alignment:
Q  175 atggttgagatttgatgtcaaaattaa-tttgacaccttagtgtcatttgatcctatc 231  Q
    |||||| |||||||||||||||||| | ||||||||| | ||||||||||||||||||    
T  550316 atggttaagatttgatgtcaaaatttagtttgacaccatggtgtcatttgatcctatc 550373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 21824606 - 21824549
Alignment:
Q  184 atttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||| ||||||| |||||||||||||||  |||||||||||| |||| |||||||||    
T  21824606 atttggtgtcaaatttaatttgacaccttgatgtcatttgatcatatcccatatatat 21824549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 21825154 - 21825210
Alignment:
Q  184 atttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||| ||||||| ||||||||||||| | |||||||||||||||||| |||||||||    
T  21825154 atttggtgtcaaatttaatttgacaccatggtgtcatttgatcctatc-catatatat 21825210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 29212051 - 29212010
Alignment:
Q  190 tgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    ||||||| ||||||||||||||| ||||||||||||||||||    
T  29212051 tgtcaaatttaatttgacaccttggtgtcatttgatcctatc 29212010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 41696125 - 41696174
Alignment:
Q  182 agatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    ||||||| ||||||| ||||||||||||||| || |||||||||||||||    
T  41696125 agatttggtgtcaaatttaatttgacaccttggtatcatttgatcctatc 41696174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 46619633 - 46619681
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||| ||||||| ||||||||||||||| ||||||||||||| ||||    
T  46619633 gatttggtgtcaaatttaatttgacaccttggtgtcatttgatcatatc 46619681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 36855670 - 36855729
Alignment:
Q  182 agatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||||| ||||||| | | ||||||||| | |||||||||||||||||| |||||||||    
T  36855670 agatttggtgtcaaactaattttgacaccatggtgtcatttgatcctatcccatatatat 36855729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 6784905 - 6784843
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||| ||||| ||||||||| ||||||| | | ||||||||| | ||||||||||||||||||    
T  6784905 aaatgaatggatgagatttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 6784843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 31915212 - 31915167
Alignment:
Q  184 atttgatgtcaaaattaatttgacaccttagtgtcatttgatcctat 230  Q
    ||||| ||||||| ||||||||||||||| |||||||||||||||||    
T  31915212 atttggtgtcaaatttaatttgacacctt-gtgtcatttgatcctat 31915167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 36854962 - 36854912
Alignment:
Q  180 tgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctat 230  Q
    ||||||||||||||||| | | ||||||||| | |||||||||||||||||    
T  36854962 tgagatttgatgtcaaactaattttgacaccatggtgtcatttgatcctat 36854912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 12835178 - 12835239
Alignment:
Q  180 tgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||||||| ||||||| | | ||||||||| | |||||||||||||||| | |||||||||    
T  12835178 tgagatttggtgtcaaactaattttgacaccatggtgtcatttgatcctaacccatatatat 12835239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 19550217 - 19550286
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatata 238  Q
    |||| ||||| | ||||||| ||||||| | | ||||||||| | |||||||||||||||||| ||||||    
T  19550217 aaatgaatggataagatttggtgtcaaactaattttgacaccatggtgtcatttgatcctatcccatata 19550286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 24377954 - 24378011
Alignment:
Q  182 agatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatat 239  Q
    ||||||||||| ||| || ||||||||||||| |||||| |||||||||  |||||||    
T  24377954 agatttgatgttaaattttatttgacaccttaatgtcatctgatcctattccatatat 24378011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 19549526 - 19549466
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatccta 229  Q
    |||| ||||| ||||||||| ||||||| | | ||||||||| | ||||||||||||||||    
T  19549526 aaatgaatggatgagatttggtgtcaaactaattttgacaccatggtgtcatttgatccta 19549466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 25478140 - 25478068
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||| ||||| | ||||||| ||||||| | | ||||||||| | |||||||||||||||| | |||||||||    
T  25478140 aaatgaatggataagatttggtgtcaaactaattttgacaccatggtgtcatttgatcctaacccatatatat 25478068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 52362797 - 52362745
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatc 226  Q
    ||||||| | ||||||||||||| ||||||| |||||||  ||||||||||||    
T  52362797 aatggttaaaatttgatgtcaaatttaatttaacaccttgatgtcatttgatc 52362745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 57 - 231
Target Start/End: Complemental strand, 23022 - 22849
Alignment:
Q  57 agaatagacatgaattaggaaaaccttaaggttgaagaagacgcaaaattggaaataataatagtcacatgaactacattaatgatttaatatgagcctt 156  Q
    |||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||  ||||||||||| ||||||||||||||    
T  23022 agaatatacatgaattaggaaaacctaaaggttgaagaagacacaaaattggaaataataatagtcacgtgagttacattaatgaattaatatgagcctt 22923  T
Q  157 tgatcaaatactaaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||||||| ||||  ||||||||||||||| |||||| |||||||||||| |||||||| |||||||||||||    
T  22922 tgatcaaatattaaa-gaatggttgagatttggtgtcaagattaatttgacatcttagtgttatttgatcctatc 22849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 22764 - 22831
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||| ||| ||||| ||||||| | | ||||||||| | ||||||||||||||||||||||||||||    
T  22764 aatggatgaaatttggtgtcaaactaattttgacaccatggtgtcatttgatcctatctcatatatat 22831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 59 - 226
Target Start/End: Complemental strand, 22259019 - 22258853
Alignment:
Q  59 aatagacatgaattaggaaaaccttaaggttgaagaagacgcaaaattggaaataataatagtcacatgaactacattaatgatttaatatgagcctttg 158  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||| ||| |||||| ||||| ||||||| || | |||    
T  22259019 aatagacatgaattaggaaaacctgaaggttgaagaagacacaaaattggaaataataataatcacgtgagctacataaatgaattaatataagtcattg 22258920  T
Q  159 atcaaatactaaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatc 226  Q
     ||||||||| ||| |||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  22258919 ttcaaatact-aataaatggttgagatttgatgtcaagattaatttgacacattggtgtcatttgatc 22258853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 28907945 - 28907882
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatat 237  Q
    |||||||  |||||||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  28907945 aatggttaggatttgatgtcaaatttaatttgacaccttagtgtcatttgatcccgtctcatat 28907882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 11238911 - 11238854
Alignment:
Q  184 atttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||| ||||| | ||||||||||||||||||||||||||||| ||||||||||||||    
T  11238911 atttggtgtcacatttaatttgacaccttagtgtcatttgatcttatctcatatatat 11238854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 11238575 - 11238508
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||||  |||||| ||||||| |||||||||||||||  ||||||||||||||||| |||||||||    
T  11238575 aatggttaggatttggtgtcaaatttaatttgacaccttgatgtcatttgatcctatcccatatatat 11238508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 20199916 - 20199870
Alignment:
Q  184 atttgatgtcaaaattaatttgacaccttagtgtcatttgatcctat 230  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||    
T  20199916 atttgatgtcaaatttaatttgacaccttggtgtcatttgatcctat 20199870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 54584877 - 54584943
Alignment:
Q  175 atggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||| ||||||||||| ||| ||| ||||||||| | |||||||||||||||||| |||||||||    
T  54584877 atggttaagatttgatgttaaatttagtttgacaccatggtgtcatttgatcctatcccatatatat 54584943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 38798301 - 38798245
Alignment:
Q  184 atttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||| ||||||| ||||||||||||| |||||||||||||||||||| |||||||||    
T  38798301 atttggtgtcaaatttaatttgacaccatagtgtcatttgatcctatc-catatatat 38798245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 53949310 - 53949367
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||||  |||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  53949310 aatggttatgatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatc 53949367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 20200614 - 20200662
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  20200614 gatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatc 20200662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 20202798 - 20202846
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  20202798 gatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatc 20202846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 46915035 - 46914963
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||| ||||| ||||||||| ||||||| | | ||||||||| | |||||||||||||||||| |||||||||    
T  46915035 aaatgaatggatgagatttggtgtcaaactaattttgacaccatggtgtcatttgatcctatcccatatatat 46914963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 47167937 - 47167889
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  47167937 gatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatc 47167889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 53950083 - 53950131
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  53950083 gatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatc 53950131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 28908663 - 28908710
Alignment:
Q  190 tgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatat 237  Q
    ||||||| |||||||||||||||||||| ||||||||||||| |||||    
T  28908663 tgtcaaatttaatttgacaccttagtgttatttgatcctatcccatat 28908710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 47169163 - 47169221
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||| ||||||| ||||||||||||||| ||||||||||||| ||||  ||||||||    
T  47169163 gatttggtgtcaaatttaatttgacaccttggtgtcatttgatcttatcctatatatat 47169221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 5531949 - 5532010
Alignment:
Q  180 tgagatttgatgtcaaaatt-aatttgacaccttagtgtcatttgatcctatctcatatata 240  Q
    ||||||||| |||||||||| |||| |||| ||||||||||||||||||||||  |||||||    
T  5531949 tgagatttggtgtcaaaatttaattcgacatcttagtgtcatttgatcctatcctatatata 5532010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 53948719 - 53948662
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||||  |||||| ||||||| ||||||||||||| | ||||||||||||||||||    
T  53948719 aatggttatgatttggtgtcaaatttaatttgacaccatggtgtcatttgatcctatc 53948662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 30833740 - 30833688
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatc 226  Q
    |||||||  |||||| ||||||| ||||||||||||||| |||||||||||||    
T  30833740 aatggttaggatttggtgtcaaatttaatttgacaccttggtgtcatttgatc 30833688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 43400765 - 43400821
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctat 230  Q
    |||||||  |||||| ||||||| ||||||||||||| | |||||||||||||||||    
T  43400765 aatggttatgatttggtgtcaaatttaatttgacaccatggtgtcatttgatcctat 43400821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 46915717 - 46915789
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||| ||||| | ||||||| ||||||| | | ||||||||| | |||||||||||||||||| |||||||||    
T  46915717 aaatgaatggataagatttggtgtcaaactaattttgacaccatggtgtcatttgatcctatcccatatatat 46915789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 50802580 - 50802652
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||| ||||| ||||||||| ||||||| | | ||||||||| | |||||| ||||||||||| |||||||||    
T  50802580 aaatgaatggatgagatttggtgtcaaactaattttgacaccatggtgtcaattgatcctatcccatatatat 50802652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 50873297 - 50873225
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||| ||||| ||||||||| ||||||| | | ||||||||| | |||||| ||||||||||| |||||||||    
T  50873297 aaatgaatggatgagatttggtgtcaaactaattttgacaccatggtgtcaattgatcctatcccatatatat 50873225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 11239884 - 11239939
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatccta 229  Q
    ||||| ||||||||| ||||| | ||||||||||||||| |||| |||||||||||    
T  11239884 aatggatgagatttggtgtcatatttaatttgacaccttggtgttatttgatccta 11239939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 30834428 - 30834495
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||||  ||||| |||||||| ||||||||| |||||  |||||||||||||||||  ||||||||    
T  30834428 aatggttaggatttaatgtcaaatttaatttgataccttgatgtcatttgatcctatcctatatatat 30834495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 51827621 - 51827555
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||||  |||||| ||||||| |||||||||||||||  |||||||||||| |||| |||||||||    
T  51827621 aatggttatgatttggtgtcaaatttaatttgacaccttgatgtcatttgatcatatc-catatatat 51827555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 22259563 - 22259617
Alignment:
Q  177 ggttgagatttgatgtcaaaatt-aatttgacaccttagtgtcatttgatcctat 230  Q
    |||||||||||| |||||||||| |||||||||||||  ||| ||||||||||||    
T  22259563 ggttgagatttggtgtcaaaatttaatttgacaccttgatgttatttgatcctat 22259617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 16302682 - 16302625
Alignment:
Q  184 atttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||| ||||||| | | ||||||||| | |||||||||||||||||| |||||||||    
T  16302682 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatcccatatatat 16302625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 46888540 - 46888476
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctc 233  Q
    |||| ||||| | ||||||| ||||||| | | ||||||||| | ||||||||||||||||||||    
T  46888540 aaatgaatggataagatttggtgtcaaactaattttgacaccatggtgtcatttgatcctatctc 46888476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 46889257 - 46889317
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatccta 229  Q
    |||| ||||| ||||||||| ||||||| | | ||||||||| | ||||||||||||||||    
T  46889257 aaatgaatggatgagatttggtgtcaaactaattttgacaccatggtgtcatttgatccta 46889317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 53948569 - 53948629
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctca 234  Q
    |||||||  |||||| ||||||| |||||||| ||| || ||||||||||||| |||||||    
T  53948569 aatggttaggatttggtgtcaaatttaatttggcacattggtgtcatttgatcatatctca 53948629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 54584287 - 54584231
Alignment:
Q  175 atggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||| |||| || ||||||| ||| ||||||||| ||||||||||||||| ||||    
T  54584287 atggttaagatatggtgtcaaatttagtttgacaccatagtgtcatttgatcatatc 54584231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 105569 - 105502
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||||| ||||||| ||||||| ||||||||||||||| |||||||||||||||||| |||||||||    
T  105569 aatggttaagatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatcccatatatat 105502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 106286 - 106343
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||||  |||||| ||||||| ||||||||||||||| ||||||||||||| ||||    
T  106286 aatggttaggatttggtgtcaaatttaatttgacaccttggtgtcatttgatcatatc 106343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 21148103 - 21148161
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  21148103 gatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatctcatatatat 21148161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 473 - 523
Target Start/End: Original strand, 33626374 - 33626424
Alignment:
Q  473 atttgaaggaattctctctgattttaaatcacaaataaaaaatcatttaac 523  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33626374 atttgaaggaattctctctaattttaaatcacaaataaaaaatcatttaac 33626424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 42521697 - 42521755
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||| ||||||| ||||||||||||||| |||||||||||||||||| |||||||||    
T  42521697 gatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatcccatatatat 42521755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 21145986 - 21145925
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctc-atatatattt 243  Q
    |||||| ||||||| ||||||||||||||| |||||||||||||||||| | ||||||||||    
T  21145986 gatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatccctatatatattt 21145925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 23206200 - 23206248
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  23206200 gatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatc 23206248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 492127 - 492199
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||| ||||| | ||||||| ||||||| | | ||||||||| | |||||||||||||||||| |||||||||    
T  492127 aaatgaatggataagatttggtgtcaaactaattttgacaccatggtgtcatttgatcctatcccatatatat 492199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 3259136 - 3259064
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||| ||||| | ||||||| ||||||| | | ||||||||| | |||||||||||||||||| |||||||||    
T  3259136 aaatgaatggataagatttggtgtcaaactaattttgacaccatggtgtcatttgatcctatcccatatatat 3259064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 3259799 - 3259871
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||| ||||| ||||||||| ||||||| | | ||||||||| | |||||||||||||||| | |||||||||    
T  3259799 aaatgaatggatgagatttggtgtcaaactaattttgacaccatggtgtcatttgatcctaacccatatatat 3259871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 4737109 - 4737038
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||| ||||| | ||||||||||||||| ||| ||||||||| | ||||||||||||| |||| |||||||||    
T  4737109 aaatgaatggataagatttgatgtcaaacttattttgacaccatggtgtcatttgatcttatc-catatatat 4737038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 14481451 - 14481523
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||| ||||| | ||||||| ||||||| | | ||||||||| | |||||||||||||||||| |||||||||    
T  14481451 aaatgaatggataagatttggtgtcaaactaattttgacaccatggtgtcatttgatcctatcccatatatat 14481523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 25836601 - 25836661
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatccta 229  Q
    |||| ||||| ||||||||| ||||||||| | ||||||||| | ||||||||||||||||    
T  25836601 aaatgaatggatgagatttggtgtcaaaataattttgacaccatggtgtcatttgatccta 25836661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 42519699 - 42519647
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatc 226  Q
    |||||||  |||||| ||||||| ||||||||||||||| |||||||||||||    
T  42519699 aatggttatgatttggtgtcaaatttaatttgacaccttggtgtcatttgatc 42519647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 42520438 - 42520485
Alignment:
Q  184 atttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    ||||| ||||||| ||||||||||||||| |||| |||||||||||||    
T  42520438 atttggtgtcaaatttaatttgacaccttggtgttatttgatcctatc 42520485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 42520667 - 42520619
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||| ||| ||| ||||| ||||||||| ||||||||||||||||||    
T  42520667 gatttggtgtaaaatttaatatgacaccttggtgtcatttgatcctatc 42520619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 20773 - 20722
Alignment:
Q  190 tgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  20773 tgtcaaatttaatttgacaccttggtgtcatttgatcctatctcatatatat 20722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 39861648 - 39861715
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||||  |||||||||| ||| ||||||||||||||| |||||||||||||||||| |||||||||    
T  39861648 aatggttaggatttgatgttaaatttaatttgacaccttggtgtcatttgatcctatcccatatatat 39861715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 25129352 - 25129408
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctat 230  Q
    |||||||  |||||||||||||| ||||||||||||||||||||||| || ||||||    
T  25129352 aatggttacgatttgatgtcaaatttaatttgacaccttagtgtcatatggtcctat 25129408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 5881192 - 5881145
Alignment:
Q  184 atttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    ||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  5881192 atttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatc 5881145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 29268003 - 29267936
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||| ||||||||| ||||||| | | ||||||||| | |||||||||||||||||| |||||||||    
T  29268003 aatggatgagatttggtgtcaaactaattttgacaccatggtgtcatttgatcctatcccatatatat 29267936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 29266212 - 29266170
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgat 225  Q
    |||||||||||||| ||||||||||||||| ||||||||||||    
T  29266212 gatttgatgtcaaatttaatttgacaccttggtgtcatttgat 29266170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 5332179 - 5332224
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcct 228  Q
    |||||| ||||||| ||||||||||||||| |||||||||||||||    
T  5332179 gatttggtgtcaaatttaatttgacaccttggtgtcatttgatcct 5332224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 16847675 - 16847736
Alignment:
Q  180 tgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||||||| ||||||| | | ||||||||| | |||||||||||||||||| |||||||||    
T  16847675 tgagatttggtgtcaaactaattttgacaccatggtgtcatttgatcctatcccatatatat 16847736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 25128645 - 25128588
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||||  |||||| ||||||| ||||||||||||||| ||||||||||||| ||||    
T  25128645 aatggttatgatttggtgtcaaatttaatttgacaccttggtgtcatttgatcttatc 25128588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 24023013 - 24023085
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||| ||||| ||||||||| ||||||| | | ||||||||| | |||||||||||||||| | |||||||||    
T  24023013 aaatgaatggatgagatttgttgtcaaactaattttgacaccatggtgtcatttgatcctaacccatatatat 24023085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 29268811 - 29268879
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctc-atatatat 241  Q
    ||||| ||||||||||||||||| | | ||||||||| | ||||||||||||| |||||| ||||||||    
T  29268811 aatggatgagatttgatgtcaaattaattttgacaccatggtgtcatttgatcatatctctatatatat 29268879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 42986696 - 42986648
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||| ||||||| |||||||||||| || ||||||||||||||||||    
T  42986696 gatttggtgtcaaatttaatttgacactttggtgtcatttgatcctatc 42986648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 36732081 - 36732131
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttga 224  Q
    |||||||  |||||| ||||||| ||||||||||||||| |||||||||||    
T  36732081 aatggttatgatttggtgtcaaatttaatttgacaccttggtgtcatttga 36732131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 39131025 - 39131087
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcata 236  Q
    |||||||  |||||| ||||||| ||||||||||||||  |||||||||||||| ||| ||||    
T  39131025 aatggttatgatttggtgtcaaatttaatttgacacctgggtgtcatttgatcccatcccata 39131087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 3583287 - 3583344
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    ||||| ||||||||| ||||||| | | ||||||||| | ||||||||||||||||||    
T  3583287 aatggatgagatttggtgtcaaattaattttgacaccatggtgtcatttgatcctatc 3583344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 3583638 - 3583695
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    ||||| ||||||||| ||||||| | | ||||||||| | ||||||||||||||||||    
T  3583638 aatggatgagatttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 3583695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 17450585 - 17450528
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||||  |||||| ||||||| |||||||||||||   ||||||||||||||||||    
T  17450585 aatggttatgatttggtgtcaaatttaatttgacaccacggtgtcatttgatcctatc 17450528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 34654941 - 34654982
Alignment:
Q  200 aatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||||||||| | |||||||||||||||||| |||||||||    
T  34654941 aatttgacaccatggtgtcatttgatcctatcccatatatat 34654982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 10092977 - 10092921
Alignment:
Q  175 atggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||| ||||||||||||||| ||| ||||||||| | | ||||||||||| ||||    
T  10092977 atggttaagatttgatgtcaaatttagtttgacaccatggcgtcatttgatcatatc 10092921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 30469571 - 30469504
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||||  |||||| ||||||| ||||||||||||||| |||||||||||||||||| |||||||||    
T  30469571 aatggttaggatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatcccatatatat 30469504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 43334189 - 43334123
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||||  |||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||    
T  43334189 aatggttatgatttgatgtcaaacttaatttgacaccttggtgtcatttgatcctatc-catatatat 43334123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 8487079 - 8487021
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||| ||||||| ||||||||||||||| |||||||||||||||||| |||||||||    
T  8487079 gatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatcccatatatat 8487021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 8512754 - 8512696
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||| ||||||| ||||||||||||||| |||||||||||||||||| |||||||||    
T  8512754 gatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatcccatatatat 8512696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 31179915 - 31179972
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    ||||||| ||||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  31179915 aatggttaagatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatc 31179972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 3163494 - 3163561
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||||  |||||| ||||||| ||||||||||||| | |||||||||||||||||| |||||||||    
T  3163494 aatggttatgatttggtgtcaaatttaatttgacaccatggtgtcatttgatcctatcccatatatat 3163561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 3162928 - 3162871
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||||  |||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  3162928 aatggttaggatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatc 3162871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 37706312 - 37706385
Alignment:
Q  168 taaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||| ||||| ||||||||| ||||||| | | ||||||||| |||||||||||||||||| | |||||||||    
T  37706312 taaatgaatggatgagatttggtgtcaaactaattttgacaccatagtgtcatttgatcctaacccatatatat 37706385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 8487814 - 8487862
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  8487814 gatttggtgtcaaatttaatttgacaccttcgtgtcatttgatcctatc 8487862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 8513469 - 8513517
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  8513469 gatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatc 8513517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 30001867 - 30001795
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||| ||||| | ||||||| ||||||| | | ||||||||| |||||||||||||||||||| |||||||||    
T  30001867 aaatgaatggataagatttggtgtcaaactaattttgacaccatagtgtcatttgatcctatcccatatatat 30001795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 30469429 - 30469501
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||| ||||| | ||||||||||||||| | | ||||||||| | |||||||||||||||||| |||||||||    
T  30469429 aaatgaatggataagatttgatgtcaaactaattttgacaccatggtgtcatttgatcctatcccatatatat 30469501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 38059897 - 38059849
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  38059897 gatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatc 38059849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 3219363 - 3219296
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||| ||||||||  ||||| | ||||||||||||||| |||||||||||||||| | |||||||||    
T  3219363 aatggatgagatttagtgtcatatttaatttgacaccttggtgtcatttgatcctaacccatatatat 3219296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 21415391 - 21415446
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatccta 229  Q
    ||||| ||||||||| ||||| | ||||||||||||||| ||||||||||||||||    
T  21415391 aatggatgagatttggtgtcatatttaatttgacaccttggtgtcatttgatccta 21415446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 30471002 - 30471069
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||| ||||||||| ||||||| | | ||||||||| | |||||||||||||||||| |||||||||    
T  30471002 aatggatgagatttggtgtcaaactaattttgacaccatggtgtcatttgatcctatcccatatatat 30471069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 43334723 - 43334790
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||||  |||||| ||||||| ||||||||||| | | |||||||||||||||||| |||||||||    
T  43334723 aatggttatgatttggtgtcaaatttaatttgacatcatggtgtcatttgatcctatcccatatatat 43334790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 4962424 - 4962374
Alignment:
Q  177 ggttgagatttgatgtcaaaatt-aatttgacaccttagtgtcatttgatc 226  Q
    |||||||||||| |||||||||| ||||||||||||| |||||||||||||    
T  4962424 ggttgagatttggtgtcaaaatttaatttgacaccttggtgtcatttgatc 4962374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 30468746 - 30468684
Alignment:
Q  180 tgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatatt 242  Q
    ||||||||| ||||||| | | ||||||||| | |||||||||||||||| ||||||||||||    
T  30468746 tgagatttggtgtcaaactaattttgacaccatggtgtcatttgatcctaactcatatatatt 30468684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 3474961 - 3474904
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||||  |||||| ||||||| ||||||||||||| |||| |||||||||||||||    
T  3474961 aatggttatgatttggtgtcaaatttaatttgacaccatagtatcatttgatcctatc 3474904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 30659914 - 30659857
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||||  |||||| ||||||| ||||||||||||| | ||||||||||||||||||    
T  30659914 aatggttatgatttggtgtcaaatttaatttgacaccatggtgtcatttgatcctatc 30659857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 37422618 - 37422561
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||||  |||||||||||||| ||||||||||||| | || |||||||||||||||    
T  37422618 aatggttatgatttgatgtcaaatttaatttgacaccatggtatcatttgatcctatc 37422561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 30002549 - 30002609
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatccta 229  Q
    |||| ||||| ||||||||||||||||| | | ||||||||| | ||||||||||||||||    
T  30002549 aaatgaatggatgagatttgatgtcaaactaattttgacaccatggtgtcatttgatccta 30002609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 32021286 - 32021214
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||| ||||| | ||||||| ||||||| | | ||||||||| | |||||||||||||||||| |||||||||    
T  32021286 aaatgaatgggtaagatttggtgtcaaactaattttgacaccatggtgtcatttgatcctatcccatatatat 32021214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 46428125 - 46428172
Alignment:
Q  184 atttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    ||||| ||||||| ||||||||||||| | ||||||||||||||||||    
T  46428125 atttggtgtcaaatttaatttgacaccatggtgtcatttgatcctatc 46428172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 24307098 - 24307160
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||| ||||| ||||||||||||||||| | | ||||||| | | ||||||||||||||||||    
T  24307098 aaatgaatggatgagatttgatgtcaaactaattttgacatcatggtgtcatttgatcctatc 24307160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 31178690 - 31178632
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||| ||||||| ||||||||||| ||| ||||||||||||| ||||  ||||||||    
T  31178690 gatttggtgtcaaatttaatttgacatcttggtgtcatttgatcatatcctatatatat 31178632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 42489963 - 42490025
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||| ||||| ||||||||| ||||||| | | ||||||||| | ||||||||||||||||||    
T  42489963 aaatgaatggatgagatttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 42490025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 3475567 - 3475624
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||||  |||||| ||||||| || |||||||||| | ||||||||||||||||||    
T  3475567 aatggttatgatttggtgtcaaatttgatttgacaccatggtgtcatttgatcctatc 3475624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 43742769 - 43742724
Alignment:
Q  184 atttgatgtcaaaattaatttgacaccttagtgtcatttgatccta 229  Q
    ||||||||||||| ||||||||| |||||  |||||||||||||||    
T  43742769 atttgatgtcaaatttaatttgataccttgatgtcatttgatccta 43742724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 19653861 - 19653928
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||||  |||||| ||||||| ||||||||||||||| |||||||||||||||||| |||||||||    
T  19653861 aatggttaggatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatcccatatatat 19653928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 8993581 - 8993648
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||||  |||||| ||||||| ||||||||||||| | |||||||||||||||||| |||||||||    
T  8993581 aatggttatgatttggtgtcaaatttaatttgacaccgtggtgtcatttgatcctatcccatatatat 8993648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 9018028 - 9018095
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||||  |||||| ||||||| ||||||||||||| | |||||||||||||||||| |||||||||    
T  9018028 aatggttatgatttggtgtcaaatttaatttgacaccgtggtgtcatttgatcctatcccatatatat 9018095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 19651121 - 19651073
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  19651121 gatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatc 19651073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 1370218 - 1370151
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||| ||||||||| ||||||| | | ||||||||| | |||||||||||||||||| |||||||||    
T  1370218 aatggatgagatttggtgtcaaactaattttgacaccatggtgtcatttgatcctatcccatatatat 1370151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 240
Target Start/End: Complemental strand, 14538064 - 14537998
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatata 240  Q
    ||||| ||| ||||||||||  | |||||||||||||||||||| ||||||||||| | ||||||||    
T  14538064 aatggatgaaatttgatgtcgtatttaatttgacaccttagtgttatttgatcctaacccatatata 14537998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 9280898 - 9280951
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcata 236  Q
    |||||| ||||||| |||||||||||| || |||||||||||||||||| ||||    
T  9280898 gatttggtgtcaaatttaatttgacacattggtgtcatttgatcctatcgcata 9280951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 18153317 - 18153260
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||||  |||||| ||||||| |||||||||||| || ||||||||||||||||||    
T  18153317 aatggttaggatttggtgtcaaatttaatttgacactttggtgtcatttgatcctatc 18153260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 18649895 - 18649952
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||||  |||||| ||||||| ||||||||||||| | ||||||||||||||||||    
T  18649895 aatggttatgatttggtgtcaaatttaatttgacaccatggtgtcatttgatcctatc 18649952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 32907486 - 32907429
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    ||||||| ||||||| ||||||| | ||||||||||| | ||||||||||||||||||    
T  32907486 aatggttaagatttggtgtcaaattaaatttgacaccatggtgtcatttgatcctatc 32907429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 1371049 - 1371115
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||| ||||||||| ||||||| | | ||||||||| | |||||||||||||||||| |||||||||    
T  1371049 aatggatgagatttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc-catatatat 1371115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 19820864 - 19820930
Alignment:
Q  175 atggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||| ||||||| ||||||| ||| ||| ||||| | || ||||||||||||||| |||||||||    
T  19820864 atggttaagatttggtgtcaaatttagtttaacaccatggtatcatttgatcctatcccatatatat 19820930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 8992950 - 8992909
Alignment:
Q  190 tgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    ||||||| ||||||||||||| | ||||||||||||||||||    
T  8992950 tgtcaaatttaatttgacaccatggtgtcatttgatcctatc 8992909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 9017397 - 9017356
Alignment:
Q  190 tgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    ||||||| ||||||||||||| | ||||||||||||||||||    
T  9017397 tgtcaaatttaatttgacaccatggtgtcatttgatcctatc 9017356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 18969852 - 18969913
Alignment:
Q  180 tgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||||||  ||||||| | | ||||||||| | |||||||||||||||||| |||||||||    
T  18969852 tgagatttagtgtcaaactaattttgacaccatggtgtcatttgatcctatcccatatatat 18969913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 21791478 - 21791545
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||||| ||||||| ||||||| ||||||||||||| | |||||||||||||||||| |||||||||    
T  21791478 aatggttaagatttggtgtcaaatttaatttgacaccatggtgtcatttgatcctatcccatatatat 21791545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 26212969 - 26212910
Alignment:
Q  182 agatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||||| ||||||| || ||||||||||||||||||||||||||||||| |||||||||    
T  26212969 agatttggtgtcaaattttatttgacaccttagtgtcatttgatcctatcccatatatat 26212910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 46284813 - 46284746
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||||  |||||||||||||| |||||||||||| || |||||||||||||||||| |||||||||    
T  46284813 aatggttaggatttgatgtcaaatttaatttgacactttggtgtcatttgatcctatcccatatatat 46284746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 5497293 - 5497351
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||| ||||||| ||||||||||||||| || |||||||||||||||||||||||||    
T  5497293 gatttggtgtcaaatttaatttgacaccttggtatcatttgatcctatctcatatatat 5497351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 21790809 - 21790752
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||||  |||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  21790809 aatggttatgatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatc 21790752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 7013041 - 7013089
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  7013041 gatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatc 7013089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 10716944 - 10716996
Alignment:
Q  189 atgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||||| ||||||||||||||| ||||||||||||| |||| |||||||||    
T  10716944 atgtcaaatttaatttgacaccttggtgtcatttgatcttatcccatatatat 10716996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 39848883 - 39848931
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  39848883 gatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatc 39848931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 47374849 - 47374897
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  47374849 gatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatc 47374897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 5496594 - 5496547
Alignment:
Q  184 atttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    ||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  5496594 atttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatc 5496547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 16960123 - 16960190
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||||  |||||| ||||||| ||||||||||||| |  ||||||||||||||||| |||||||||    
T  16960123 aatggttatgatttggtgtcaaatttaatttgacaccatgatgtcatttgatcctatcccatatatat 16960190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 29858981 - 29858915
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||||  |||||| ||||||| ||||||||||| ||| |||||||||||||||||| |||||||||    
T  29858981 aatggttatgatttggtgtcaaatttaatttgacatcttggtgtcatttgatcctatc-catatatat 29858915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 39870815 - 39870874
Alignment:
Q  182 agatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||||| ||||||| | ||||||||||| | ||||||||||||| ||||||||||||||    
T  39870815 agatttggtgtcaaactaaatttgacaccatggtgtcatttgatcatatctcatatatat 39870874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 42986807 - 42986748
Alignment:
Q  182 agatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||||| ||||||| ||||||| ||| ||| ||||||||||||| ||||||||||||||    
T  42986807 agatttggtgtcaaatttaattttacatcttggtgtcatttgatcatatctcatatatat 42986748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 5216620 - 5216563
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    ||||||| ||||||| | ||||| ||||||||||||| | ||||||||||||||||||    
T  5216620 aatggttaagatttggtatcaaatttaatttgacaccatggtgtcatttgatcctatc 5216563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 14886826 - 14886883
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||||  |||||| ||||||| ||||||||||||| | ||||||||||||||||||    
T  14886826 aatggttatgatttggtgtcaaatttaatttgacaccatggtgtcatttgatcctatc 14886883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 40959768 - 40959833
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatat 239  Q
    ||||| ||||||||| ||||||| | | ||||||||| | |||||||||||||||||| |||||||    
T  40959768 aatggatgagatttggtgtcaaactaattttgacaccatggtgtcatttgatcctatcccatatat 40959833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 42987079 - 42987136
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||||  |||||||||||||| |||||||||||| || || |||||||||||||||    
T  42987079 aatggttaggatttgatgtcaaatttaatttgacactttggtatcatttgatcctatc 42987136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 46285543 - 46285600
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||||  |||||| ||||||| ||||||||||||||| ||||||||||||| ||||    
T  46285543 aatggttaggatttggtgtcaaatttaatttgacaccttggtgtcatttgatcatatc 46285600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 27651375 - 27651324
Alignment:
Q  190 tgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||||| ||||||||||||| | ||||||||||||| |||| |||||||||    
T  27651375 tgtcaaatttaatttgacaccatggtgtcatttgatcatatcccatatatat 27651324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 48577560 - 48577619
Alignment:
Q  182 agatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||||| ||||||| | | ||||||||| | |||||||||||||||||| |||||||||    
T  48577560 agatttggtgtcaaactaattttgacaccatggtgtcatttgatcctatcccatatatat 48577619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 240
Target Start/End: Complemental strand, 4594765 - 4594699
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatata 240  Q
    ||||| ||| ||||| ||||||| | | ||||||||| | |||||||||||||||||| ||||||||    
T  4594765 aatggatgaaatttggtgtcaaactaattttgacaccatggtgtcatttgatcctatcccatatata 4594699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 24081518 - 24081456
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||| ||||| ||||||||| ||||||| | | ||||||||| | ||||||||||||||||||    
T  24081518 aaatgaatggatgagatttggtgtcaaattaattttgacaccatggtgtcatttgatcctatc 24081456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 39847857 - 39847800
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||| ||||||| |||||||||||| || ||||||||||||||||||  ||||||||    
T  39847857 gatttggtgtcaaatttaatttgacac-ttggtgtcatttgatcctatcctatatatat 39847800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 4595572 - 4595629
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    ||||| ||||||||| ||||||| | | ||||||||| | ||||||||||||||||||    
T  4595572 aatggatgagatttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 4595629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 14886211 - 14886154
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||||  |||||| ||||||| || |||||||||| | ||||||||||||||||||    
T  14886211 aatggttatgatttggtgtcaaatttgatttgacaccatggtgtcatttgatcctatc 14886154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 16959546 - 16959505
Alignment:
Q  190 tgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    ||||||| ||||||||||||||| |||| |||||||||||||    
T  16959546 tgtcaaatttaatttgacaccttggtgttatttgatcctatc 16959505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 17606298 - 17606265
Alignment:
Q  198 ttaatttgacaccttagtgtcatttgatcctatc 231  Q
    ||||||||||||||| ||||||||||||||||||    
T  17606298 ttaatttgacaccttggtgtcatttgatcctatc 17606265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 27652097 - 27652150
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcc 227  Q
    |||||||  |||||| ||||||| ||||||||||||| | ||||||||||||||    
T  27652097 aatggttatgatttggtgtcaaatttaatttgacaccatggtgtcatttgatcc 27652150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 7012014 - 7011966
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||| ||||||| ||||||||||||||  ||||||||||||| ||||    
T  7012014 gatttggtgtcaaatttaatttgacacctcggtgtcatttgatcatatc 7011966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 47052403 - 47052351
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatc 226  Q
    |||||||  |||||| ||||||| ||||||||||||| | |||||||||||||    
T  47052403 aatggttatgatttggtgtcaaatttaatttgacaccatggtgtcatttgatc 47052351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 51661348 - 51661408
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatccta 229  Q
    |||| ||||| ||||||||| ||||||| | | ||||||||| | ||||||||||||||||    
T  51661348 aaatgaatggatgagatttggtgtcaaactaattttgacaccatggtgtcatttgatccta 51661408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 42848767 - 42848709
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||| ||||||| |||||||||||||||| ||||||||||||||||| |||||||||    
T  42848767 gatttggtgtcaaatttaatttgacaccttattgtcatttgatcctatcccatatatat 42848709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 8911225 - 8911158
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||||  |||||| |||||||  |||||||||||| | ||||||||||||||||||||||||||||    
T  8911225 aatggttatgatttggtgtcaaatataatttgacaccatggtgtcatttgatcctatctcatatatat 8911158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 121347 - 121291
Alignment:
Q  190 tgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatattttac 246  Q
    ||||||| |||||||||||||||||||||||||||||  ||| | ||||||||||||    
T  121347 tgtcaaatttaatttgacaccttagtgtcatttgatctcatcccttatatattttac 121291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 863270 - 863198
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||| ||||| ||||||||| ||||||| | | ||||||||| | |||||||||||||||||| |||||||||    
T  863270 aaatgaatggatgagatttggtgtcaaactaattttgacaccatggtgtcatttgatcctatcccatatatat 863198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 42849504 - 42849552
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  42849504 gatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatc 42849552  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 122961 - 123008
Alignment:
Q  184 atttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    ||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  122961 atttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatc 123008  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 19386354 - 19386287
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||||  |||||| ||||||| ||||||||||||| | ||||||||||||| |||| |||||||||    
T  19386354 aatggttatgatttggtgtcaaatttaatttgacaccatggtgtcatttgatcatatcccatatatat 19386287  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 13328818 - 13328864
Alignment:
Q  184 atttgatgtcaaaattaatttgacaccttagtgtcatttgatcctat 230  Q
    ||||| ||||||| ||||||| |||||||||||||||||||||||||    
T  13328818 atttggtgtcaaatttaatttaacaccttagtgtcatttgatcctat 13328864  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 240
Target Start/End: Complemental strand, 20202709 - 20202643
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatata 240  Q
    |||||||  |||||| ||||||| |||||||||||||   |||||||||||||||||| ||||||||    
T  20202709 aatggttatgatttggtgtcaaatttaatttgacaccacggtgtcatttgatcctatcccatatata 20202643  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 39629521 - 39629583
Alignment:
Q  184 atttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatattttac 246  Q
    ||||| ||||||| ||||||||||||||| ||||||||||||| |||| |  |||||||||||    
T  39629521 atttggtgtcaaatttaatttgacaccttggtgtcatttgatcatatccccaatatattttac 39629583  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 4776989 - 4777030
Alignment:
Q  190 tgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    ||||||| ||||||||||||||| ||||||||||||||||||    
T  4776989 tgtcaaatttaatttgacaccttggtgtcatttgatcctatc 4777030  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 8911833 - 8911890
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||||  |||||| ||||||| ||||||||||||| | ||||||||||||||||||    
T  8911833 aatggttatgatttggtgtcaaatttaatttgacaccatggtgtcatttgatcctatc 8911890  T

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Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 13327803 - 13327738
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatat 239  Q
    |||||||  |||||| ||||||| ||||||| ||||||| ||||||||||||| |||| |||||||    
T  13327803 aatggttaggatttggtgtcaaatttaatttaacaccttggtgtcatttgatcttatcccatatat 13327738  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 24429677 - 24429610
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||| ||||||||| ||||||| | | ||||||||  | |||||||||||||||||| |||||||||    
T  24429677 aatggatgagatttggtgtcaaactaattttgacacgatggtgtcatttgatcctatcccatatatat 24429610  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 27059235 - 27059168
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||| ||||||||| ||| ||| | | ||||||||| | |||||||||||||||||| |||||||||    
T  27059235 aatggatgagatttggtgtgaaactaattttgacaccatggtgtcatttgatcctatcccatatatat 27059168  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 4776290 - 4776249
Alignment:
Q  190 tgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    ||||||| |||||||||||| |||||||||||||||| ||||    
T  4776290 tgtcaaatttaatttgacactttagtgtcatttgatcatatc 4776249  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 34453012 - 34453069
Alignment:
Q  184 atttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||| ||||||| | | ||||||||| | |||||||||||||||||| |||||||||    
T  34453012 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatcccatatatat 34453069  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 38273602 - 38273553
Alignment:
Q  182 agatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    ||||||| ||||||| || |||||||||||| |||| |||||||||||||    
T  38273602 agatttggtgtcaaattttatttgacaccttggtgttatttgatcctatc 38273553  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 38986041 - 38985992
Alignment:
Q  182 agatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    ||||||| ||||||| | | ||||||||| ||||||||||||||||||||    
T  38986041 agatttggtgtcaaactaattttgacaccatagtgtcatttgatcctatc 38985992  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 2054419 - 2054347
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||| ||||| | ||||||  ||||||| | | ||||||||| | |||||||||||||||||| |||||||||    
T  2054419 aaatgaatggataagatttagtgtcaaactaattttgacaccatggtgtcatttgatcctatcccatatatat 2054347  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 44926691 - 44926643
Alignment:
Q  183 gatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    |||||||||| ||| |||||||||||||||  |||||||||||| ||||    
T  44926691 gatttgatgtaaaatttaatttgacaccttgatgtcatttgatcatatc 44926643  T

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Target: scaffold0155 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 1057 - 990
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||||||  |||||| ||||||| |||||||||||| || |||||||||||||||||| |||||||||    
T  1057 aatggttaggatttggtgtcaaatttaatttgacactttggtgtcatttgatcctatcccatatatat 990  T

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Target: scaffold0853 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 658 - 607
Alignment:
Q  190 tgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    ||||||| |||||||||||| || |||||||||||||||||| |||||||||    
T  658 tgtcaaatttaatttgacacattggtgtcatttgatcctatcccatatatat 607  T

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Target: scaffold0188 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 25673 - 25616
Alignment:
Q  174 aatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatc 231  Q
    ||||| || |||||| ||||||| |||||||||||| || ||||||||||||||||||    
T  25673 aatggctgggatttggtgtcaaatttaatttgacacattggtgtcatttgatcctatc 25616  T

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Target: scaffold0050 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 8475 - 8403
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||| ||||| | ||||||| ||||||| | | ||||||||| | |||||||||||||||||| |||||||||    
T  8475 aaatgaatggataagatttggtgtcaaactaattttgacaccatggtgtcatttgatcctatcccatatatat 8403  T

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Target: scaffold1339 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 1980 - 1908
Alignment:
Q  169 aaatcaatggttgagatttgatgtcaaaattaatttgacaccttagtgtcatttgatcctatctcatatatat 241  Q
    |||| ||||| | ||||||| ||||||| | | ||||||||| | |||| ||||||||||||| |||||||||    
T  1980 aaatgaatggataagatttggtgtcaaactaattttgacaccatggtgttatttgatcctatcccatatatat 1908  T

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